View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9453_low_5 (Length: 527)
Name: NF9453_low_5
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9453_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 6 - 465
Target Start/End: Original strand, 6387276 - 6387734
Alignment:
| Q |
6 |
gtttggtgtttggttgagagaagaaaattacacaaacgaaagaaacaataagaagagaggttgtgaagaccaattgagctttggtgggcctcgagctaaa |
105 |
Q |
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| T |
6387276 |
gtttggtgtttggttgagagaagaaaattacacaaacgaaagaaacaataagaagagaggttgtgaagaccaattgagctttggtgggcctcgagctaaa |
6387375 |
T |
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| Q |
106 |
gtgggtaacaatgttgttgactttagtgctgttaatgttgtgaacatgatgaaaagtggcaaggtttgtaactgaaatatgaccttagcttgctacattt |
205 |
Q |
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| T |
6387376 |
gtgggtaacaatgttgttgactttagtgctgttaatgttgtgaacatgatgaaaagtggcaaggtttgtaactgaaatatgaccttagcttgctacattt |
6387475 |
T |
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| Q |
206 |
cagatataaaatttacnnnnnnnnnnagaaaaaataaagataaaagtgacatcgtgaaaaatgataagatcactaattagttctcatcatgtttggggta |
305 |
Q |
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| T |
6387476 |
cagatataaaatttacttttttttt-agaaaaaataaagataaaagtgatatcgtgaaaaatgataagatcactaattagttctcatcatgtttggggta |
6387574 |
T |
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| Q |
306 |
gaaagatcgaatgttctacctgatgttcctttcatgtatttaagttgtgttaattttgatttaattttaatctaggtaatatgatcatacgaatattcgt |
405 |
Q |
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| T |
6387575 |
gaaagatcgaatgttctacctgatgttcctttcatgtatttaagttgtgttaattttgatttaattttaatctaggtaatatgatcatacaaatattcgt |
6387674 |
T |
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| Q |
406 |
atacggatagtaaccgtcaatgtatggctttttacgtcaatgatgaatatagtagttgtt |
465 |
Q |
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| T |
6387675 |
atacggatagtaacagtcaatgtatggctttttacgtcaatgatgaatatagtagttgtt |
6387734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 472 - 500
Target Start/End: Original strand, 6387729 - 6387757
Alignment:
| Q |
472 |
gttgttatcatgttgtctggtttggtgat |
500 |
Q |
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| T |
6387729 |
gttgttatcatgttgtctggtttggtgat |
6387757 |
T |
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