View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9453_low_6 (Length: 513)

Name: NF9453_low_6
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9453_low_6
NF9453_low_6
[»] chr8 (9 HSPs)
chr8 (19-501)||(950102-950584)
chr8 (85-497)||(1101249-1101651)
chr8 (401-497)||(14939634-14939730)
chr8 (401-492)||(31032024-31032115)
chr8 (411-497)||(19473661-19473747)
chr8 (411-497)||(19544586-19544672)
chr8 (411-497)||(19588024-19588110)
chr8 (395-453)||(29456064-29456122)
chr8 (401-497)||(3379130-3379226)
[»] scaffold0057 (1 HSPs)
scaffold0057 (401-497)||(58905-59001)
[»] chr1 (2 HSPs)
chr1 (401-497)||(5924801-5924897)
chr1 (401-492)||(9487460-9487549)
[»] chr4 (1 HSPs)
chr4 (401-497)||(52545118-52545214)
[»] chr5 (1 HSPs)
chr5 (413-492)||(20012943-20013022)
[»] chr6 (1 HSPs)
chr6 (419-497)||(24544757-24544835)
[»] chr2 (1 HSPs)
chr2 (412-498)||(17148642-17148728)


Alignment Details
Target: chr8 (Bit Score: 443; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 19 - 501
Target Start/End: Complemental strand, 950584 - 950102
Alignment:
Q  19 cttacgcatctaattatcacatattttaataaaaaagttaacgttaaagatgaatttgatttgatgtctacaggaaatctaggaaatttgcccttgatta 118  Q
    ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  950584 cttacacatctaattatcacatattttaaaaaaaaagttaatgttaaagatgaatttgatttgatgtctacaggaaatctaggaaatttgcccttgatta 950485  T
Q  119 ttgtcccagctgtatgtaaacaaacaggcaacccttttggagatgcagatatttgtcatagaaatggacttgcttatgcttctctatcaatggcggtacg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  950484 ttgtcccagctgtatgtaaacaaacaggcaacccttttggagatgcagatatttgtcatagaaatggacttgcttatgcttctttatcaatggcggtaca 950385  T
Q  219 atatttaattaatgcatattcaaattaactgtgaaattgtcaaaatcacggtaatcataataatacactatagttagttgataggttatctcgagttatt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  950384 atatttaattaatgcatattcaaattaactgtgaaattgtcaaaatcacggtaatcataataatacactatagttagttgataggttatctcgagttatt 950285  T
Q  319 aatttggtcaaagtgacttggagttgactacttcaactaatctctatatataggaatacacattgtactattacaattattattttaacaacctattcat 418  Q
    | |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||    
T  950284 agtttggtcaaagttacttggagttgactacttcaactaacctctatatataggaatacacattgtactatttcaattattattctaacaacctattcat 950185  T
Q  419 tctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatctctg 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  950184 tctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatctctg 950102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 85 - 497
Target Start/End: Original strand, 1101249 - 1101651
Alignment:
Q  85 tctacaggaaatctaggaaatttgcccttgattattgtcccagctgtatgtaaacaaacaggcaacccttttggagatgcagatatttgtcatagaaatg 184  Q
    |||||| ||||| |||||||||||||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||| |||||||||| |||||||     
T  1101249 tctacacgaaatttaggaaatttgcccttgattattgccccagctgtttgtaaataaagaggcaacccttttggagatgcggatatttgtcgtagaaata 1101348  T
Q  185 gacttgcttatgcttctctatcaatggcggtacgatatttaattaatgcatattcaaattaactgtgaaattgtcaaaat---cacggtaatcataataa 281  Q
    |||||||||||||||||||||| |||||||||||||| || ||||||||||||| ||| |||| |||||||||||| |||    ||| |||||||| ||     
T  1101349 gacttgcttatgcttctctatcgatggcggtacgatacttgattaatgcatatttaaactaacggtgaaattgtcagaattacgacgataatcatagtat 1101448  T
Q  282 tacactatagttagttgataggttatctcgagttattaatttggtcaaagtgacttggagttgactacttcaactaatctctatatataggaatacacat 381  Q
    ||||||||||||||||| ||||||| || |||| | || |||||          || |||||   |||  ||||||||||||||||||    | | ||||    
T  1101449 tacactatagttagttgttaggttaactagagtaaatagtttgg----------ttagagttagttacaccaactaatctctatatat---gacatacat 1101535  T
Q  382 tgtactattacaattattattttaacaacctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgat 481  Q
    ||||| |||   |||||| ||||||||| ||| |||||||||||||||||| ||||||| ||  | |||| ||||| | |||||||| ||| ||  ||||    
T  1101536 tgtaccattttgattattcttttaacaatctactcattctactatgaatttttatgagtgtcacccacataaatactcctatgattgctttgttgttgat 1101635  T
Q  482 cactatgatctctatc 497  Q
    || |||||||||||||    
T  1101636 cagtatgatctctatc 1101651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 401 - 497
Target Start/End: Original strand, 14939634 - 14939730
Alignment:
Q  401 ttttaacaacctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatc 497  Q
    ||||| ||| ||||||||||||  |||| |||||| ||||||||||||||||| ||| |||||| ||| |||||| |||||||||||||||| ||||    
T  14939634 ttttatcaatctattcattctataatgagtttctacgagtatcttctacatgagtactcatatgcttgctttcttgctgatcactatgatctttatc 14939730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 492
Target Start/End: Complemental strand, 31032115 - 31032024
Alignment:
Q  401 ttttaacaacctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatct 492  Q
    ||||| ||| ||||||||||||  |||| ||||||||||||||| | |||||| ||| | |||| ||| |||||| ||||||||||||||||    
T  31032115 ttttatcaatctattcattctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgctgatcactatgatct 31032024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 497
Target Start/End: Original strand, 19473661 - 19473747
Alignment:
Q  411 ctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatc 497  Q
    ||||||||||||  |||| ||||||||||||||| | |||||| ||| | |||  ||| |||||| |||||||||||||||| ||||    
T  19473661 ctattcattctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgctgatcactatgatctttatc 19473747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 497
Target Start/End: Original strand, 19544586 - 19544672
Alignment:
Q  411 ctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatc 497  Q
    ||||||||||||  |||| ||||||||||||||| | |||||| ||| | |||  ||| |||||| |||||||||||||||| ||||    
T  19544586 ctattcattctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgctgatcactatgatctttatc 19544672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 411 - 497
Target Start/End: Complemental strand, 19588110 - 19588024
Alignment:
Q  411 ctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatc 497  Q
    ||||||||||||  |||| ||||||||||||||| | |||||| ||| | |||  ||| |||||| |||||||||||||||| ||||    
T  19588110 ctattcattctataatgagtttctatgagtatctcccacatgagtactcttattcttgctttcttgctgatcactatgatctttatc 19588024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 453
Target Start/End: Complemental strand, 29456122 - 29456064
Alignment:
Q  395 ttattattttaacaacctattcattctactatgaatttctatgagtatcttctacatga 453  Q
    ||||| ||||| ||| |||||||||||| |||| |||||||||||||||||| ||||||    
T  29456122 ttattcttttatcaatctattcattctattatgtatttctatgagtatcttccacatga 29456064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 497
Target Start/End: Complemental strand, 3379226 - 3379130
Alignment:
Q  401 ttttaacaacctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatc 497  Q
    ||||| ||| ||||||||||||  |||| ||||||||||||||| | |||||| |||   |||  ||| |||||| ||||||| |||||||| ||||    
T  3379226 ttttatcaatctattcattctataatgagtttctatgagtatctcccacatgagtacttttatacttgctttcttgctgatcattatgatctttatc 3379130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 497
Target Start/End: Original strand, 58905 - 59001
Alignment:
Q  401 ttttaacaacctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatc 497  Q
    ||||| ||| ||||||||||||  |||| ||||||||||||||| | |||||| ||| | |||| ||| |||||| |||||||||||||||| ||||    
T  58905 ttttatcaatctattcattctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttgctgatcactatgatctttatc 59001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 497
Target Start/End: Complemental strand, 5924897 - 5924801
Alignment:
Q  401 ttttaacaacctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatc 497  Q
    ||||| ||| ||||||||||||  |||| ||||||||||||||| ||| |||||||| | |||| ||| ||| || |||||||||||||||| ||||    
T  5924897 ttttatcaatctattcattctataatgagtttctatgagtatctcctatatgaatactcttatgcttgcttttttactgatcactatgatctttatc 5924801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 492
Target Start/End: Original strand, 9487460 - 9487549
Alignment:
Q  401 ttttaacaacctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatct 492  Q
    ||||| ||| ||||||||||||| |||||| |||  ||||||||   |||||||||  | |||| ||| |||||| ||||||||||||||||    
T  9487460 ttttatcaatctattcattctacaatgaatctct--gagtatctctcacatgaataatcttatgcttgctttcttgctgatcactatgatct 9487549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 497
Target Start/End: Complemental strand, 52545214 - 52545118
Alignment:
Q  401 ttttaacaacctattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatc 497  Q
    ||||| ||| ||||||||||||  |||| ||||||||||||||| | |||||| ||| | |||| | | |||||| |||||||||||||||| ||||    
T  52545214 ttttatcaatctattcattctataatgagtttctatgagtatctcccacatgagtactcttatgctcgctttcttgctgatcactatgatctttatc 52545118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 492
Target Start/End: Complemental strand, 20013022 - 20012943
Alignment:
Q  413 attcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatct 492  Q
    ||||||||||  |||| ||||||||||||||| | |||||| ||| | |||| ||| ||||||  |||||||||||||||    
T  20013022 attcattctataatgagtttctatgagtatctcccacatgagtactcttatgcttgctttcttggtgatcactatgatct 20012943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 497
Target Start/End: Original strand, 24544757 - 24544835
Alignment:
Q  419 tctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatc 497  Q
    |||||||||| ||||||||||||||| |  ||||| ||| | |||| ||| |||||| || ||||||||||||| ||||    
T  24544757 tctactatgagtttctatgagtatctccctcatgagtactcttatgcttgctttcttgcttatcactatgatctttatc 24544835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 498
Target Start/End: Complemental strand, 17148728 - 17148642
Alignment:
Q  412 tattcattctactatgaatttctatgagtatcttctacatgaatacgcatatgattgttttctttctgatcactatgatctctatct 498  Q
    ||||||||||||||| ||||||||||||||||| | |||||| |||   |||| ||| ||| ||  |||||| |||||||| |||||    
T  17148728 tattcattctactataaatttctatgagtatctcccacatgagtactgttatgtttgcttttttgatgatcattatgatctttatct 17148642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University