View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9453_low_7 (Length: 496)
Name: NF9453_low_7
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9453_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 2 - 478
Target Start/End: Original strand, 31867515 - 31867989
Alignment:
| Q |
2 |
aaccaacaatccaacttcttccttcctcaaaggagcaaacatctcaactttggaagaatgcaataattgaacgctacacaatttcctcatattgcgccaa |
101 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31867515 |
aaccaacaatccaacttcttcctttctcaaaggagcaaacatctcaactttcgaagaatgcaataattgaacgctacacaatttcctcatattgcgccaa |
31867614 |
T |
|
| Q |
102 |
cagtcaccatactcggtaaaaattattcccttttttccatatgtcatataatctgcagcaaaagctttgggtctactagagaaaatactatcatgggtct |
201 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31867615 |
tagtcgccatactcggtaaaaattattccctttttaccatatgtcatataatctgcagcaaaagctttgggtgtactagagaaaatactatcatgggtct |
31867714 |
T |
|
| Q |
202 |
tgaggaataattcagcaatttgaggtgatgaaaccacaatggtttggagttgtcctaatttgaaggacattatgggtcaatatttttgagaaagcaattg |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31867715 |
tgaggaataattcagcaatttgaggtgatgaaaccacaatggtttggacttgtcctaatttgaaggacattatgggtcaatatttttgagaaagcaattg |
31867814 |
T |
|
| Q |
302 |
aagggaacgatgtggaagttttcctagcatgtgaaggttaccaataattggcaaaggttttggacctggtggatttttgctaccannnnnnngaatcaat |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31867815 |
aagggaacgatgtggaagttttcctagcatgtgaaggttaccaataattggcaaaggttttggacctggtggatttttgctacca-ttttttgaatcaat |
31867913 |
T |
|
| Q |
402 |
tttgagtgaaaaaatagtagctgatagaatgagtatgaatgtaacagagaaattcagggataacaagtgtttgaggt |
478 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31867914 |
tttgagtg-aaaaatagtagctgatagaatgggtatgaatgtaacagagaaattcagggataacaaatgtttgaggt |
31867989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 2 - 461
Target Start/End: Complemental strand, 31889585 - 31889125
Alignment:
| Q |
2 |
aaccaacaatccaacttcttccttcctcaaaggagcaaacatctcaactttggaagaatgcaataattgaacgctacacaatttcctcatattgcgccaa |
101 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
31889585 |
aaccaacaatccaacctcttcctttctcaaaggagcaaacatctcaacttttgaagaatgcaataattgaatggtacacaatttcctcatattgcgccaa |
31889486 |
T |
|
| Q |
102 |
cagtcaccatactcggtaaaaattattcccttttttccatatgtcatataatctgcagcaaaagctttgggtctactagagaaaatactatcatgggtct |
201 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||| |
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| T |
31889485 |
tagtcgccatactcggtgaaaattatgccctttttaccatatgtcatataatctgcagcaaaagctttaggcctgctagagaaaatactatcatgggtct |
31889386 |
T |
|
| Q |
202 |
tgaggaataattcagcaatttgaggtgatgaaaccacaatggtttggagttgtcctaatttgaaggacattatgggtcaatatttttgagaaagcaattg |
301 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||| | ||| |
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| T |
31889385 |
tgaggaataattcagcaatttgaggtgatgaaaccacaatggtttggacttgtcctaatttgaaggacattattggtccatatttttgagaaaggagttg |
31889286 |
T |
|
| Q |
302 |
aagggaacgatgtggaagttttcctagcatgtgaaggttaccaataattggcaaaggttttggacctggtggatttttgctaccannnnnnngaatcaat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || || || |
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| T |
31889285 |
aagggaacgatgtggaagttttcctagcatgtgaaggttaccaataattggcaaaggttttggacctggtggatttttcctaccatttttttgattccat |
31889186 |
T |
|
| Q |
402 |
tttgagtgaaaaaatagtagctgatagaatgagtatgaatgtaac--agagaaattcaggga |
461 |
Q |
| |
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||||||| ||||||||||||||| |||||||| |||||| |||| |||||| |||||||| |
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|
| T |
31889185 |
tttgagt-taaaaatagtagctgacagaatgagaatgaatataacaaagagaatttcaggga |
31889125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 298 - 379
Target Start/End: Original strand, 31954353 - 31954434
Alignment:
| Q |
298 |
attgaagggaacgatgtggaagttttcctagcatgtgaaggttaccaataattggcaaaggttttggacctggtggattttt |
379 |
Q |
| |
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||||||||| ||||||||| ||||||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||||||||| |
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| T |
31954353 |
attgaagggtacgatgtggtagttttcctaggatgtggaggttgccaataattgggaaaggttttggaccaggtggattttt |
31954434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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