View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9453_low_9 (Length: 459)

Name: NF9453_low_9
Description: NF9453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9453_low_9
NF9453_low_9
[»] chr3 (1 HSPs)
chr3 (1-459)||(3568156-3568614)


Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 3568614 - 3568156
Alignment:
Q  1 ctcttgggagaaatgttggaccagcaaaggagattgctctctagcagaaaccaaatcagtagaagccaaatcatcatgcacttcaacgtgctctacaaaa 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3568614 ctcttgggagaaatgttggaccagcaaaggagattcctctctagcagaaaccaaatcagtagaagccaaatcatcatgcacttcaacgtgctctacaaaa 3568515  T
Q  101 cttgaaaccgacgcagctgcaaccgaaaaaggaacatgcaagttcgtgttttctggctgcgtttgctccatttgaagaacttgcatgtcatcttgctcaa 200  Q
    |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3568514 cttgaaacggacgcagctgcaaccgaaaaaggaacatgcgagttcgtgttttctggctgcgtttgctccatttgaagaacttgcatgtcatcttgctcaa 3568415  T
Q  201 catcagtggccaactccaaaacatggatatcaggacgaggaagtctaccttgaggaatatgatccgacacattcttcaaggtgaagctaaaggagttggc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3568414 catcagtggccaactccaaaacatggatatcaggacgaggaagtctaccttgaggaatatgatccgacacattcttcaaggtgaagctaaaggagttggc 3568315  T
Q  301 ggaaatatccttggaaggaacatcagacgaagaacatttttcttgattaacatcaacagtcgcagtggacaaaggtgttgtcacttccacatgcttaatg 400  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3568314 ggaaatatccttggaaggaacatcagacgaagaagatttttcttgattaacatcaacagtcgcagtggacaaaggtgttgtcacttccacatgcttaatg 3568215  T
Q  401 ggaacaaaaatttattcatcctccaccttcttctttcctttgtctttgtcgcgagaagg 459  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3568214 ggaacaaaaatttattcatcctccaccttcttctttcctttgtctttgtcgcgagaagg 3568156  T

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