View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9454_1 (Length: 483)

Name: NF9454_1
Description: NF9454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9454_1
NF9454_1
[»] chr8 (9 HSPs)
chr8 (62-469)||(23745876-23746289)
chr8 (40-222)||(21208566-21208748)
chr8 (54-222)||(14887299-14887467)
chr8 (56-151)||(22835371-22835466)
chr8 (40-135)||(18236943-18237038)
chr8 (40-135)||(18246394-18246489)
chr8 (40-140)||(20748621-20748721)
chr8 (40-135)||(33597564-33597659)
chr8 (40-129)||(12919836-12919925)
[»] scaffold0163 (1 HSPs)
scaffold0163 (40-469)||(19803-20229)
[»] chr3 (8 HSPs)
chr3 (40-457)||(40089318-40089732)
chr3 (40-457)||(2159165-2159579)
chr3 (40-222)||(6426870-6427052)
chr3 (40-222)||(8977409-8977591)
chr3 (67-222)||(16406172-16406327)
chr3 (40-222)||(9541699-9541881)
chr3 (54-140)||(28360381-28360467)
chr3 (97-137)||(25507093-25507133)
[»] scaffold0066 (1 HSPs)
scaffold0066 (93-462)||(1799-2175)
[»] chr1 (1 HSPs)
chr1 (40-469)||(20175248-20175674)
[»] chr5 (12 HSPs)
chr5 (22-212)||(21081392-21081582)
chr5 (315-469)||(21081583-21081737)
chr5 (40-222)||(27416694-27416876)
chr5 (40-246)||(20952400-20952606)
chr5 (40-222)||(18384303-18384485)
chr5 (40-222)||(26197921-26198103)
chr5 (40-151)||(33943954-33944065)
chr5 (54-222)||(19381388-19381556)
chr5 (40-140)||(30450278-30450378)
chr5 (40-135)||(24296248-24296343)
chr5 (40-140)||(24416830-24416930)
chr5 (54-102)||(26040415-26040463)
[»] scaffold0145 (1 HSPs)
scaffold0145 (40-222)||(33497-33679)
[»] chr6 (6 HSPs)
chr6 (40-222)||(24927761-24927943)
chr6 (40-222)||(16902509-16902691)
chr6 (40-222)||(31361382-31361564)
chr6 (67-222)||(18164628-18164783)
chr6 (40-153)||(27746664-27746777)
chr6 (97-153)||(11378009-11378065)
[»] chr4 (5 HSPs)
chr4 (54-222)||(16269619-16269787)
chr4 (40-222)||(6696781-6696963)
chr4 (54-222)||(17155979-17156147)
chr4 (40-140)||(26816491-26816591)
chr4 (40-140)||(54695462-54695562)
[»] chr2 (8 HSPs)
chr2 (40-246)||(27165576-27165782)
chr2 (54-151)||(45018984-45019081)
chr2 (40-222)||(9509360-9509542)
chr2 (40-222)||(18655781-18655963)
chr2 (54-141)||(22103158-22103245)
chr2 (97-132)||(29847521-29847556)
chr2 (73-132)||(29862811-29862870)
chr2 (74-143)||(22906787-22906856)
[»] scaffold0313 (2 HSPs)
scaffold0313 (54-223)||(14119-14288)
scaffold0313 (54-145)||(40-131)
[»] scaffold0611 (1 HSPs)
scaffold0611 (54-222)||(2509-2677)
[»] chr7 (11 HSPs)
chr7 (40-222)||(16137780-16137962)
chr7 (40-222)||(6539040-6539222)
chr7 (40-222)||(26353895-26354077)
chr7 (40-222)||(32102943-32103125)
chr7 (40-222)||(46501677-46501859)
chr7 (54-222)||(9540850-9541018)
chr7 (40-198)||(5387511-5387669)
chr7 (40-222)||(8505612-8505794)
chr7 (40-222)||(44901920-44902102)
chr7 (54-151)||(18663519-18663616)
chr7 (40-140)||(15179736-15179836)
[»] scaffold0254 (1 HSPs)
scaffold0254 (40-222)||(13574-13756)
[»] scaffold0141 (1 HSPs)
scaffold0141 (54-145)||(30523-30614)
[»] scaffold0049 (2 HSPs)
scaffold0049 (54-145)||(84198-84289)
scaffold0049 (97-153)||(19201-19257)
[»] scaffold0059 (1 HSPs)
scaffold0059 (40-144)||(46020-46124)
[»] scaffold0764 (1 HSPs)
scaffold0764 (54-145)||(6489-6580)
[»] scaffold0572 (1 HSPs)
scaffold0572 (40-145)||(19-124)
[»] scaffold0142 (1 HSPs)
scaffold0142 (54-151)||(32516-32613)
[»] scaffold0003 (1 HSPs)
scaffold0003 (74-222)||(153135-153283)
[»] scaffold0028 (1 HSPs)
scaffold0028 (40-140)||(99976-100076)
[»] scaffold0010 (2 HSPs)
scaffold0010 (40-135)||(261085-261180)
scaffold0010 (40-135)||(263388-263483)
[»] scaffold0233 (1 HSPs)
scaffold0233 (40-140)||(6894-6994)
[»] scaffold0021 (1 HSPs)
scaffold0021 (97-153)||(167490-167546)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 62 - 469
Target Start/End: Original strand, 23745876 - 23746289
Alignment:
Q  62 actaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgaggttctggta 161  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  23745876 actaatctttccttgtttctgacaaccttaccattttcatctagtatatctctgaacacccatcttgttccaatgatggtttcgtcttgaggttcaggta 23745975  T
Q  162 ccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatccattattgatcagtgatagcttcatttaaggattttggctc 261  Q
    || |||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| |||||| ||||||| ||||||||| ||||||||||||    
T  23745976 ccgaattccagactttgtttctctcaaattgagaaagctcttaagtcatggcttcaatccatgattgattagtgataacttcatttatggattttggctc 23746075  T
Q  262 catttggaaaatcatagcca----nnnnnnnncttggaatgatgatcttgttcttactttgtcagcagtgtcacaaatgattaactctttaggatgatca 357  Q
     |||||  |||||||| |||             |||  |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  23746076 tatttgagaaatcataaccatgtttgatttgtgttgttatgatgatcttgttcttactttatcagcagagtcacaaatgattaactctttaggatgatca 23746175  T
Q  358 acaactgatttccagcttggacg--tggatagagaagatgaatctggttcgtcttcaaccttttgttttgatatatcagaagtttgttgatgactagaat 455  Q
    |||||||||||||||||||||||  |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23746176 acaactgatttccagcttggacgaatggatagagaagatgaatttggttcgtcttcatccttttgttttgatatatcagaagtttgttgatgactagaat 23746275  T
Q  456 gatgatgtccatct 469  Q
     ||||||| |||||    
T  23746276 aatgatgttcatct 23746289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 21208566 - 21208748
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  21208566 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 21208665  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  21208666 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 21208748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 54 - 222
Target Start/End: Original strand, 14887299 - 14887467
Alignment:
Q  54 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgagg 153  Q
    ||||||||||||| ||||| ||||||||||||||||||||   || ||| || || ||||| |||||||||||||||||||||||| |||||||||||      
T  14887299 cttgagcaactaaccttgctttgtttctgacaaccttacctcctttatcaagcttgtttctaaacacccatcttgttccaatgatgcttttgtcttgatt 14887398  T
Q  154 ttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
     | ||| || || ||||| |||||||| || ||| | |||||||| || ||  ||||||| ||||||||    
T  14887399 atttggaactaagttccaaactttgtttctttcaaactgagaaagttcctccttcatggcctcaatcca 14887467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 56 - 151
Target Start/End: Complemental strand, 22835466 - 22835371
Alignment:
Q  56 tgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttga 151  Q
    ||||||||||| ||||| |||||||||||||||||||| | |||||| || ||||||||||| ||| ||||||| ||||||||||||||| |||||    
T  22835466 tgagcaactaaccttgcattgtttctgacaaccttaccttcttcatcaagcttatttctgaaaacctatcttgtaccaatgatggttttgccttga 22835371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 135
Target Start/End: Complemental strand, 18237038 - 18236943
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaat 135  Q
    ||||||||| ||  |||| ||||||||||| || || ||||||| ||| || || | |||||||||||||||||| || |||||||||||||||||    
T  18237038 ttgttgattgtagccttgtgcaactaatctggctttatttctgataacttttccttcttcatctagtttatttctaaaaacccatcttgttccaat 18236943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 135
Target Start/End: Complemental strand, 18246489 - 18246394
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaat 135  Q
    ||||||||| ||  |||| ||||||||||| || || ||||||| ||| || || | |||||||||||||||||| || |||||||||||||||||    
T  18246489 ttgttgattgtagccttgtgcaactaatctggctttatttctgataacttttccttcttcatctagtttatttctaaaaacccatcttgttccaat 18246394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 20748721 - 20748621
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    ||||||||| ||  ||||||| || ||||| || |||||||| | ||| || || | ||||| |||||||||||| || || ||||||||||||||||||    
T  20748721 ttgttgattgtacccttgagctaccaatctagctttgtttcttataacttttccttcttcatttagtttatttctaaatactcatcttgttccaatgatg 20748622  T
Q  140 g 140  Q
    |    
T  20748621 g 20748621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 33597564 - 33597659
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaat 135  Q
    ||||||||||||  |||| || |||||||| || || ||||||| ||| || || | |||||||| ||| |||||||| |||||||| ||||||||    
T  33597564 ttgttgattatacccttgtgcgactaatctcgctttatttctgataacttttccttcttcatctaatttgtttctgaaaacccatctggttccaat 33597659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 12919925 - 12919836
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgt 129  Q
    ||||||||||||  |||| || |||||||| || || ||||||||||| || || | |||||||| ||| |||||||| ||||| |||||    
T  12919925 ttgttgattatagccttgtgctactaatctagctttatttctgacaacttttccttcttcatctaatttgtttctgaagacccaccttgt 12919836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 40 - 469
Target Start/End: Complemental strand, 20229 - 19803
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    ||||||||||||| |||||||||||| |||||| ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20229 ttgttgattataaccttgagcaactagtcttgctttgtttctgaccactttaccatcttcatctagtttatttctgaacacccatcttgttccaatgatg 20130  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatccattattgatcagtgatag 239  Q
    ||||||||| ||||||| ||||| ||||||||||||||||| || ||| | ||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  20129 gttttgtctcgaggttcaggtactaaattccagactttgtttctttcaaactgagaaagctcttcagtcatggcttcaatccatgattgatcaatgatag 20030  T
Q  240 cttcatttaaggattttggctccatttggaaaatcatagcca----nnnnnnnncttggaatgatgatcttgttcttactttgtcagcagtgtcacaaat 335  Q
    ||||||||| ||||||||||||||||||  ||||||||||||            |||||||||||||||||||||||||||| ||||||||||||| |||    
T  20029 cttcatttatggattttggctccatttgagaaatcatagccatgtttgttttgtcttggaatgatgatcttgttcttactttatcagcagtgtcaccaat 19930  T
Q  336 gattaactctttaggatgatcaacaactgatttccagcttggacgtggatagagaagatgaatctggttcgtcttcaaccttttgttttgatatatcaga 435  Q
    |||||| ||||| ||||||||||||||||||||||||||||||   |||  ||    ||||||||||||| |||||| ||||||||||||||||||||||    
T  19929 gattaattcttttggatgatcaacaactgatttccagcttgga---ggaatga----atgaatctggttcatcttcatccttttgttttgatatatcaga 19837  T
Q  436 agtttgttgatgactagaatgatgatgtccatct 469  Q
     |||||||||||||||||||||||| || |||||    
T  19836 ggtttgttgatgactagaatgatgaggttcatct 19803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 40 - 457
Target Start/End: Original strand, 40089318 - 40089732
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    ||||||||||||| ||||||| |||| |||||| |||||||| || || ||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  40089318 ttgttgattataaccttgagctactagtcttgctttgtttcttaccactttaccatcttcatctagtttatttctgaacacccatcttgttccaatgata 40089417  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatccattattgatcagtgatag 239  Q
    ||||||||||||||||| ||||| ||||||||||||||||| || ||| |||||||||| |||||||||||||||||||||||| |||||||| ||||||    
T  40089418 gttttgtcttgaggttcaggtactaaattccagactttgtttctttcaaattgagaaagttcttcagtcatggcttcaatccatgattgatcaatgatag 40089517  T
Q  240 cttcatttaaggattttggctccatttggaaaatcatagcca----nnnnnnnncttggaatgatgatcttgttcttactttgtcagcagtgtcacaaat 335  Q
    ||||||||| ||||||||||||||||||  ||||||||||||            |||||||||||||||||||||||||||| ||||||||||||| |||    
T  40089518 cttcatttatggattttggctccatttgagaaatcatagccatgtttgttttgtcttggaatgatgatcttgttcttactttatcagcagtgtcaccaat 40089617  T
Q  336 gattaactctttaggatgatcaacaactgatttccagcttggacgtggatagagaagatgaatctggttcgtcttcaaccttttgttttgatatatcaga 435  Q
    |||||| |||||||||||||||||||||||||||||| |||||   |||  ||    |||||| |||||| ||||||  ||| |||||||||| ||||||    
T  40089618 gattaattctttaggatgatcaacaactgatttccagtttgga---ggaatga----atgaatttggttcatcttcattcttctgttttgatacatcaga 40089710  T
Q  436 agtttgttgatgactagaatga 457  Q
     ||||||||||| |||||||||    
T  40089711 ggtttgttgatgtctagaatga 40089732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 40 - 457
Target Start/End: Complemental strand, 2159579 - 2159165
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    ||||||||||||| ||||||||||||  ||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2159579 ttgttgattataaccttgagcaactagccttgctttgtttctgacaactttaccatcttcatctagtttatttctgaacacccatcttgttccaatgatg 2159480  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatccattattgatcagtgatag 239  Q
    ||||||||| | ||||| ||||| ||||||||||||||||| || ||| |||||||||| |||||| ||||||||||||||||| |||||||| ||||||    
T  2159479 gttttgtctcgtggttcaggtactaaattccagactttgtttctttcaaattgagaaagttcttcattcatggcttcaatccatgattgatcaatgatag 2159380  T
Q  240 cttcatttaaggattttggctccatttggaaaatcatagcca----nnnnnnnncttggaatgatgatcttgttcttactttgtcagcagtgtcacaaat 335  Q
    ||||||||| ||||||||||||||||||  | ||||||||||            |||||||||||||||||||||||||||| ||||||||||||| |||    
T  2159379 cttcatttatggattttggctccatttgagagatcatagccatgtttgttttgtcttggaatgatgatcttgttcttactttatcagcagtgtcaccaat 2159280  T
Q  336 gattaactctttaggatgatcaacaactgatttccagcttggacgtggatagagaagatgaatctggttcgtcttcaaccttttgttttgatatatcaga 435  Q
    |||||| ||||||||||||||||||||||||||||||||||||   |||  ||    |||||  |||||| ||||||  ||| |||||||||| ||||||    
T  2159279 gattaattctttaggatgatcaacaactgatttccagcttgga---ggaatga----atgaacttggttcatcttcattcttctgttttgatacatcaga 2159187  T
Q  436 agtttgttgatgactagaatga 457  Q
     ||||||||||| |||||||||    
T  2159186 ggtttgttgatgtctagaatga 2159165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 6427052 - 6426870
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||||||||| | |||||| || || |||||||| |||||||||||||||||||||    
T  6427052 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatg 6426953  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| ||||||||    
T  6426952 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggcctcaatcca 6426870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 8977591 - 8977409
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  8977591 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 8977492  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  8977491 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 8977409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 67 - 222
Target Start/End: Complemental strand, 16406327 - 16406172
Alignment:
Q  67 tcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgaggttctggtaccaaa 166  Q
    |||||| |||||||||||||| ||||| | |||||| || || |||||||| |||||||||||||||||||||||||| ||||||   | ||| |||||     
T  16406327 tcttgctttgtttctgacaactttaccttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatggttttatcttgattatttggaaccaag 16406228  T
Q  167 ttccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| |||||||| || ||| | |||||||| |||||  ||||||| ||||||||    
T  16406227 ttccaaactttgtttctttcaaactgagaaagttcttccttcatggcctcaatcca 16406172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 9541881 - 9541699
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| | ||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  9541881 ttgttggttgtaaccttgagcaactaaccgtgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 9541782  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  9541781 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 9541699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 28360381 - 28360467
Alignment:
Q  54 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatgg 140  Q
    ||||||| || ||||| || |||||||||| ||| || || | ||||| |||||||||||| || || |||||||||||||||||||    
T  28360381 cttgagctaccaatctagctttgtttctgataacttttccttcttcatttagtttatttctaaatacacatcttgttccaatgatgg 28360467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 25507093 - 25507133
Alignment:
Q  97 ttcatctagtttatttctgaacacccatcttgttccaatga 137  Q
    |||||||||||| ||||| || |||||||||||||||||||    
T  25507093 ttcatctagtttgtttctaaaaacccatcttgttccaatga 25507133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 93 - 462
Target Start/End: Original strand, 1799 - 2175
Alignment:
Q  93 cattttcatctagtttatttctga-acacccatcttgttccaatgatggttttgtcttgaggttctggtaccaaattccagactttgttcctctcagatt 191  Q
    |||||||||| ||| ||||||||| |||| ||| |||||||||||||||||| ||||||| |||  |||||||||||||| |||||||| |||||| |||    
T  1799 cattttcatccagtatatttctgacacacgcattttgttccaatgatggtttcgtcttgatgtttaggtaccaaattccatactttgtttctctcaaatt 1898  T
Q  192 gagaaagctcttcagtcatggcttcaatccattattgatcagtgatagcttcatttaaggattttggctccatttggaaaatcatagccannnnnnnn-- 289  Q
    |||||||||||||||||||||||||||||||| |||||| | ||||| ||||||||| |||||||||||| |||||  |||||| |||||              
T  1899 gagaaagctcttcagtcatggcttcaatccatgattgattaatgataacttcatttatggattttggctctatttgagaaatcaaagccatatttgattt 1998  T
Q  290 --cttggaatgatgatcttgttcttactttgtcagcagtgtcacaaatgattaactctttaggatgatcaacaactgatttccagcttggacg--tggat 385  Q
      ||||  |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |  |||||    
T  1999 gtcttgttatgatgatcttgttcttactttatcagcagtgtcaccaatgattaactctttaggatgatcaacaactgatttccagcttggaggaatggat 2098  T
Q  386 agagaagatgaatctggttcgtcttcaaccttttgttttgatatatcagaagtttgttgatgactagaatgatgatg 462  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2099 agagaagatgaatttggttcgtcttcatccttttgttttgatatatcagaagtttgttgatgactagaatgatgatg 2175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 40 - 469
Target Start/End: Complemental strand, 20175674 - 20175248
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    ||||||||||||| ||||||||||||  ||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20175674 ttgttgattataaccttgagcaactagccttgctttgtttctgacaactttaccatcttcatctagtttatttctgaacacccatcttgttccaatgatg 20175575  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatccattattgatcagtgatag 239  Q
    ||||||||| | ||||  ||||| ||||||||||||||||| || ||| |||||||||| |||||| ||||||||||||||||| |||||||| ||||||    
T  20175574 gttttgtctcgtggtttaggtactaaattccagactttgtttctttcaaattgagaaagttcttcattcatggcttcaatccatgattgatcaatgatag 20175475  T
Q  240 cttcatttaaggattttggctccatttggaaaatcatagcca----nnnnnnnncttggaatgatgatcttgttcttactttgtcagcagtgtcacaaat 335  Q
    ||||||||| ||||||||||||||||||  | ||||||||||            |||||||||||||||||||||||||||| ||||||||||||| |||    
T  20175474 cttcatttatggattttggctccatttgagatatcatagccatgtttgttttgtcttggaatgatgatcttgttcttactttatcagcagtgtcaccaat 20175375  T
Q  336 gattaactctttaggatgatcaacaactgatttccagcttggacgtggatagagaagatgaatctggttcgtcttcaaccttttgttttgatatatcaga 435  Q
    |||||| | ||| ||||||||||||||||||||||||||||||   |||  |     |||||| || ||| ||||||   ||||||||||||||||||||    
T  20175374 gattaatttttttggatgatcaacaactgatttccagcttgga---ggaatg----tatgaatttgtttcatcttcatttttttgttttgatatatcaga 20175282  T
Q  436 agtttgttgatgactagaatgatgatgtccatct 469  Q
     ||||||||||| |||||||||||| || |||||    
T  20175281 tgtttgttgatgtctagaatgatgaggttcatct 20175248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 159; Significance: 2e-84; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 21081392 - 21081582
Alignment:
Q  22 atcatcaaaatagactttttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacc 121  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21081392 atcatcaaaatagacttcttgttgattataaccttgagcaactaatcttggcttgtttctgacaaccttaccattttcatccagtttatttctgaacacc 21081491  T
Q  122 catcttgttccaatgatggttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatgg 212  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  21081492 catcttgttccaatgatggttttgtcttgaggttcagataccaaattccagactttgttcctctcaaattgagaaagctattcagtcatgg 21081582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 315 - 469
Target Start/End: Original strand, 21081583 - 21081737
Alignment:
Q  315 tttgtcagcagtgtcacaaatgattaactctttaggatgatcaacaactgatttccagcttggacgtggatagagaagatgaatctggttcgtcttcaac 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21081583 tttgtcagcagtgtcacaaatgattaactctttaggatgatcaacaactaatttccagcttggacgtggatagagaagatgaatctggttcgtcttcaac 21081682  T
Q  415 cttttgttttgatatatcagaagtttgttgatgactagaatgatgatgtccatct 469  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21081683 attttgttttgatatatcagaagtttgttgatgactagaatgatgatgttcatct 21081737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 27416876 - 27416694
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||||||||| | |||||| ||||| |||||||| |||||| ||||||||||||||    
T  27416876 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagtttgtttctgaaaacccatgttgttccaatgatg 27416777  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| ||||||||    
T  27416776 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggcctcaatcca 27416694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 246
Target Start/End: Complemental strand, 20952606 - 20952400
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    ||||||||| ||| ||||||| ||||  ||||| |||||||||||||||||||| | |||||| || || || ||||| |||||||||||||||||||||    
T  20952606 ttgttgattgtaaccttgagctactagccttgctttgtttctgacaaccttaccttcttcatcaagcttgttcctgaaaacccatcttgttccaatgatg 20952507  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatccattattgatcagtgatag 239  Q
    ||||||  ||||   | ||| || |||||||| ||||| || || ||| | |||||||| |||||  ||||||||||||||||| | | |||| |||| |    
T  20952506 gttttgctttgattatttggaactaaattccaaactttatttctttcaaactgagaaagttcttccttcatggcttcaatccatgagtcatcaatgatgg 20952407  T
Q  240 cttcatt 246  Q
    |||||||    
T  20952406 cttcatt 20952400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 18384485 - 18384303
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  18384485 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 18384386  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  18384385 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 18384303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 26197921 - 26198103
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  26197921 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 26198020  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  26198021 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 26198103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 33944065 - 33943954
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  33944065 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 33943966  T
Q  140 gttttgtcttga 151  Q
    ||||| ||||||    
T  33943965 gttttatcttga 33943954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 54 - 222
Target Start/End: Original strand, 19381388 - 19381556
Alignment:
Q  54 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgagg 153  Q
    ||||||||||||| ||||| |||||||| ||||||||||| | |||||| || || |||||||| ||| ||||||| ||||||||||||||| |||||      
T  19381388 cttgagcaactaaccttgctttgtttctaacaaccttaccttcttcatcaagcttgtttctgaaaacctatcttgtaccaatgatggttttgccttgatc 19381487  T
Q  154 ttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
     | ||| || || ||||| |||||||| || ||| | |||||||| | |||  ||||||| ||||||||    
T  19381488 atttggaactaagttccaaactttgtttctttcaaactgagaaagttattctttcatggcctcaatcca 19381556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 30450278 - 30450378
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    ||||||||| ||  ||||||| || ||||| || |||||||||| ||| || || | ||||| |||||||||||| || |||||||||||||||||||||    
T  30450278 ttgttgattgtacccttgagctaccaatctagctttgtttctgataacttttccttcttcatttagtttatttctaaatacccatcttgttccaatgatg 30450377  T
Q  140 g 140  Q
    |    
T  30450378 g 30450378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 24296248 - 24296343
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaat 135  Q
    ||||||||| ||  |||| ||||||||||| || || ||||||| ||| || || | |||||||||||||||||| || |||||||||||||||||    
T  24296248 ttgttgattgtagccttgtgcaactaatctggctttatttctgataacttttccttcttcatctagtttatttctaaaaacccatcttgttccaat 24296343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 24416930 - 24416830
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    ||||||||| ||  ||||||| || ||||| || ||||||||||  || || || | ||||| |||||||||||| || |||||||||||||||||||||    
T  24416930 ttgttgattgtacccttgagctaccaatctagctttgtttctgatgacttttccttcttcatttagtttatttctaaatacccatcttgttccaatgatg 24416831  T
Q  140 g 140  Q
    |    
T  24416830 g 24416830  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 26040415 - 26040463
Alignment:
Q  54 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatc 102  Q
    ||||||| |||||||||||||||||||||   || ||||||||||||||    
T  26040415 cttgagctactaatcttgccttgtttctggttacattaccattttcatc 26040463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 33497 - 33679
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||||||||  | |||||| || || |||||||| |||||||||||||||||||||    
T  33497 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaaccttacgttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatg 33596  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||||||||||  || ||| || || ||||| |||||||| || ||| | |||||||| |||||  ||||||| ||||||||    
T  33597 gttttgtcttgattttttggaactaagttccaaactttgtttctttcaaactgagaaagttcttctttcatggcctcaatcca 33679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 24927761 - 24927943
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||||||||| | |||||| || || |||||||| |||||||||||||||||||||    
T  24927761 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatg 24927860  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| ||||||||    
T  24927861 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggcctcaatcca 24927943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 16902691 - 16902509
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||||||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  16902691 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 16902592  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| ||||||||    
T  16902591 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggcctcaatcca 16902509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 31361564 - 31361382
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  31361564 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 31361465  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  31361464 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 31361382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 67 - 222
Target Start/End: Complemental strand, 18164783 - 18164628
Alignment:
Q  67 tcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgaggttctggtaccaaa 166  Q
    |||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||||||| ||||||   | ||| |||||     
T  18164783 tcttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatggttttatcttgattatttggaaccaag 18164684  T
Q  167 ttccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  18164683 ttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 18164628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 40 - 153
Target Start/End: Original strand, 27746664 - 27746777
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    ||||||||||||  |||| || |||||||| || |||||||  | ||  || || | |||||||||||| ||||| || ||||||||||||||||| ||     
T  27746664 ttgttgattatatccttgtgccactaatctggctttgtttcgaataattttgccttcttcatctagtttgtttctaaaaacccatcttgttccaataatt 27746763  T
Q  140 gttttgtcttgagg 153  Q
    |||| |||||||||    
T  27746764 gtttggtcttgagg 27746777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 11378065 - 11378009
Alignment:
Q  97 ttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgagg 153  Q
    ||||| |||||| ||||| || |||||||||||||||||||| ||||  ||||||||    
T  11378065 ttcatttagtttgtttctaaaaacccatcttgttccaatgattgtttgatcttgagg 11378009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 54 - 222
Target Start/End: Complemental strand, 16269787 - 16269619
Alignment:
Q  54 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgagg 153  Q
    ||||||||||||| ||||| |||||||||||||||||||  | |||||| || || |||||||| |||||||||||||||||||||||||||||||||      
T  16269787 cttgagcaactaaccttgctttgtttctgacaaccttacgttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatggttttgtcttgatt 16269688  T
Q  154 ttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    || ||| || || ||||| |||||||| || ||| | |||||||| |||||  ||||||| ||||||||    
T  16269687 ttttggaactaagttccaaactttgtttctttcaaactgagaaagttcttctttcatggcctcaatcca 16269619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 6696963 - 6696781
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  6696963 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 6696864  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  6696863 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 6696781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 54 - 222
Target Start/End: Complemental strand, 17156147 - 17155979
Alignment:
Q  54 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgagg 153  Q
    ||||||||||||| ||||| |||||||||||||||||||| | |||||| || || ||| |||| || |||||||| ||||||||||||||| |||||      
T  17156147 cttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttatgaaaactcatcttgtaccaatgatggttttgccttgatc 17156048  T
Q  154 ttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
     | ||| || || ||||| |||||||| || ||| | |||||||| |||||  ||||||| ||||||||    
T  17156047 atttggaactaagttccaaactttgtttctttcaaactgagaaagttcttctttcatggcctcaatcca 17155979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 26816591 - 26816491
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    ||||||||| ||  ||||||| || ||||| || |||||||||| ||| || || | ||||| |||||||||||| || |||||||||||||||||||||    
T  26816591 ttgttgattgtacccttgagctaccaatctagctttgtttctgataacttttccttcttcatttagtttatttctaaatacccatcttgttccaatgatg 26816492  T
Q  140 g 140  Q
    |    
T  26816491 g 26816491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 54695462 - 54695562
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    ||||||||| ||  ||||||| || ||||| || |||||||||| ||| || || | ||||| |||||||||||| || |||||||||||||||||||||    
T  54695462 ttgttgattgtacccttgagctaccaatctagctttgtttctgataacttttccttcttcatttagtttatttctaaatacccatcttgttccaatgatg 54695561  T
Q  140 g 140  Q
    |    
T  54695562 g 54695562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 6e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 40 - 246
Target Start/End: Original strand, 27165576 - 27165782
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    ||||||||| ||| ||||||| ||||  ||||| |||||||||||||||||||| | |||||| || || || ||||| |||||||||||||||||||||    
T  27165576 ttgttgattgtaaccttgagctactagccttgctttgtttctgacaaccttaccttcttcatcaagcttgttcctgaaaacccatcttgttccaatgatg 27165675  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatccattattgatcagtgatag 239  Q
    ||||||  ||||   | ||| || |||||||| |||||||| || ||| | |||||||| |||||  ||||||||||||||||| | | |||| |||| |    
T  27165676 gttttgctttgattatttggaactaaattccaaactttgtttctttcaaactgagaaagttcttccttcatggcttcaatccatgagtcatcaatgatgg 27165775  T
Q  240 cttcatt 246  Q
    |||||||    
T  27165776 cttcatt 27165782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 45019081 - 45018984
Alignment:
Q  54 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttga 151  Q
    ||||||||||||| ||||| |||||||||||||||||||| | |||||| ||||| |||||||| |||||||||||||||||||||||||||||||||    
T  45019081 cttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagtttgtttctgaaaacccatcttgttccaatgatggttttgtcttga 45018984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 9509360 - 9509542
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  9509360 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 9509459  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  9509460 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 9509542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 18655963 - 18655781
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  18655963 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 18655864  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| ||| |||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  18655863 gttttatcttgattatttggaaccaagttccaaactctgtttctttcaaactgagaaagttcttccttcatggccttaatcca 18655781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 22103245 - 22103158
Alignment:
Q  54 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggt 141  Q
    |||||||||| |||||||||||||||||  |||| ||  ||| |||||| || |||||||| ||||||||||||||||||||||||||    
T  22103245 cttgagcaaccaatcttgccttgtttctagcaactttgtcatcttcatcaagcttatttctaaacacccatcttgttccaatgatggt 22103158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 132
Target Start/End: Original strand, 29847521 - 29847556
Alignment:
Q  97 ttcatctagtttatttctgaacacccatcttgttcc 132  Q
    |||||||||||||||| |||||||||||||||||||    
T  29847521 ttcatctagtttatttttgaacacccatcttgttcc 29847556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 29862811 - 29862870
Alignment:
Q  73 cttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttcc 132  Q
    |||||||||||  |||||||  | |||||||||||| |||||||||||||||||| ||||    
T  29862811 cttgtttctgatcaccttactttcttcatctagtttgtttctgaacacccatcttattcc 29862870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 22906856 - 22906787
Alignment:
Q  74 ttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttt 143  Q
    |||||||||| ||||||||| | |||||| || || ||||| || | ||||||||||| |||||||||||    
T  22906856 ttgtttctgaaaaccttaccttcttcatcaagcttgtttctaaaaatccatcttgttctaatgatggttt 22906787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 54 - 223
Target Start/End: Complemental strand, 14288 - 14119
Alignment:
Q  54 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgagg 153  Q
    ||||||| ||||  ||||| |||||||||||||||||||| | |||||| || || |||||||| |||||||||||||||||||||||||||  ||||      
T  14288 cttgagctactagccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatggttttgctttgatt 14189  T
Q  154 ttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatccat 223  Q
     | ||| || |||||||| |||||||| || ||| |||||||||| |||||  |||||||||||||||||    
T  14188 atttggaactaaattccaaactttgtttctttcaaattgagaaagttcttccttcatggcttcaatccat 14119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 131 - 40
Alignment:
Q  54 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttg 145  Q
    ||||||| ||||  ||||| |||||||||||||||||||| | |||||| || || |||||||| |||||||||||||||||||||||||||    
T  131 cttgagctactagccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatggttttg 40  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0611 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 54 - 222
Target Start/End: Complemental strand, 2677 - 2509
Alignment:
Q  54 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgagg 153  Q
    ||||||||||||| ||||| ||||||||||||||||||   | |||||| || || |||||||| |||||||||||||||||||||||||||||||||      
T  2677 cttgagcaactaaccttgctttgtttctgacaaccttaaattcttcatcaagcttgtttctgaaaacccatcttgttccaatgatggttttgtcttgatt 2578  T
Q  154 ttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    || ||| || || ||||| |||||||| || ||| | |||||||| |||||  ||||||| ||||||||    
T  2577 ttttggaactaagttccaaactttgtttctttcaaactgagaaagttcttctttcatggcctcaatcca 2509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 16137780 - 16137962
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||||||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  16137780 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 16137879  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||| | ||||||||    
T  16137880 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatgacctcaatcca 16137962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 6539222 - 6539040
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  6539222 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 6539123  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  6539122 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 6539040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 26353895 - 26354077
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  26353895 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 26353994  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  26353995 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 26354077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 32103125 - 32102943
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  32103125 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 32103026  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  32103025 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 32102943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 46501859 - 46501677
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  46501859 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 46501760  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  46501759 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 46501677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 54 - 222
Target Start/End: Original strand, 9540850 - 9541018
Alignment:
Q  54 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgagg 153  Q
    ||||||||||||| ||||| |||||| ||||||||||||| | |||||| ||||| |||||||| | ||||||||||||||||||||||||||||| |      
T  9540850 cttgagcaactaaccttgctttgtttttgacaaccttaccttcttcatcaagtttgtttctgaaaatccatcttgttccaatgatggttttgtcttaatt 9540949  T
Q  154 ttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
     | ||| || |  ||||| |||||||| || ||| | |||||||| |||||  ||||||| ||||||||    
T  9540950 atttggaactaggttccaaactttgtttctttcatactgagaaagttcttccttcatggcctcaatcca 9541018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 40 - 198
Target Start/End: Original strand, 5387511 - 5387669
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  5387511 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 5387610  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaag 198  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | ||||||||    
T  5387611 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaag 5387669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 8505794 - 8505612
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  8505794 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 8505695  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| ||| |||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  8505694 gttttatcttgattatttggaaccaagttccaaactctgtttctttcaaactgagaaagttcttccttcatggccttaatcca 8505612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 44902102 - 44901920
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  44902102 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 44902003  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| ||| |||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  44902002 gttttatcttgattatttggaaccaagttccaaactctgtttctttcaaactgagaaagttcttccttcatggccttaatcca 44901920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 54 - 151
Target Start/End: Complemental strand, 18663616 - 18663519
Alignment:
Q  54 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttga 151  Q
    |||||||||| || ||||| |||||||||||||||||||  | |||||| || || ||| |||| | ||||||||||||||||||||||||| |||||    
T  18663616 cttgagcaaccaaccttgctttgtttctgacaaccttactttcttcatcaagcttgtttttgaaaaaccatcttgttccaatgatggttttgccttga 18663519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 15179836 - 15179736
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    ||||||||| ||  ||||||| || ||||| || |||||||||| ||| || || | ||||| |||||||||||| || |||||||||||||||||||||    
T  15179836 ttgttgattgtacccttgagctaccaatctagctttgtttctgataacttttccttcttcatttagtttatttctaaatacccatcttgttccaatgatg 15179737  T
Q  140 g 140  Q
    |    
T  15179736 g 15179736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 13574 - 13756
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| |||||||||||||| ||||| | |||||| || || ||||| || |||||||||||||||||||||    
T  13574 ttgttggttgtaaccttgagcaactaaccttgctttgtttctgacaactttaccttcttcatcaagcttgtttctaaaaacccatcttgttccaatgatg 13673  T
Q  140 gttttgtcttgaggttctggtaccaaattccagactttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||| ||||||   | ||| ||||| ||||| |||||||| || ||| | |||||||| |||||  ||||||| | ||||||    
T  13674 gttttatcttgattatttggaaccaagttccaaactttgtttctttcaaactgagaaagttcttccttcatggccttaatcca 13756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 30614 - 30523
Alignment:
Q  54 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttg 145  Q
    ||||||||||||| ||||| ||||||||||||||||| || | |||||| || || |||||||| |||||||||||||||||||||||||||    
T  30614 cttgagcaactaaccttgctttgtttctgacaacctttccttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatggttttg 30523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 84198 - 84289
Alignment:
Q  54 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttg 145  Q
    ||||||||||||| ||||| ||||||||||||||||| || | |||||| || || |||||||| |||||||||||||||||||||||||||    
T  84198 cttgagcaactaaccttgctttgtttctgacaacctttccttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatggttttg 84289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 19257 - 19201
Alignment:
Q  97 ttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgagg 153  Q
    |||||||||||| ||||| || ||||||||||||||||| || ||||  ||||||||    
T  19257 ttcatctagtttgtttctaaagacccatcttgttccaataattgtttgatcttgagg 19201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 144
Target Start/End: Original strand, 46020 - 46124
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    |||||| || ||| ||||||||||||| ||||| || ||||||||||| || |||| |||||| || || |||||||| |||||||||||||||||||||    
T  46020 ttgttggttgtaaccttgagcaactaaccttgctttatttctgacaactttgccatcttcatcaagcttgtttctgaaaacccatcttgttccaatgatg 46119  T
Q  140 gtttt 144  Q
    |||||    
T  46120 gtttt 46124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0764 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0764
Description:

Target: scaffold0764; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 6489 - 6580
Alignment:
Q  54 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttg 145  Q
    ||||||| ||||  ||||| |||||||||||||||||||| | |||||| || || |||||||| |||||||||||||||||||||||||||    
T  6489 cttgagctactagccttgctttgtttctgacaaccttaccttcttcatcaagcttgtttctgaaaacccatcttgttccaatgatggttttg 6580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 124 - 19
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    ||||||||| ||| ||||||| ||||  ||||| |||||||||||||||||||| | |||||| || || ||  |||| |||||||||||||||||||||    
T  124 ttgttgattgtaaccttgagctactagccttgctttgtttctgacaaccttaccttcttcatcaagcttgttcttgaaaacccatcttgttccaatgatg 25  T
Q  140 gttttg 145  Q
    ||||||    
T  24 gttttg 19  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 32516 - 32613
Alignment:
Q  54 cttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttga 151  Q
    ||||||||||||| ||||| ||  |||||||||||||||| | ||||||  |||| |||||||| || |||||||||||||||||||||||| |||||    
T  32516 cttgagcaactaaccttgcttttcttctgacaaccttaccttcttcatcatgtttgtttctgaaaactcatcttgttccaatgatggttttgccttga 32613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 222
Target Start/End: Complemental strand, 153283 - 153135
Alignment:
Q  74 ttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgaggttctggtaccaaattccaga 173  Q
    |||||||||| ||||||||| | |||||| || || ||||| || |||||||||||||||||||||||||||  ||||   | ||  || |||||||| |    
T  153283 ttgtttctgataaccttaccttcttcatcaagcttgtttcttaaaacccatcttgttccaatgatggttttgctttgattatttgtaactaaattccaaa 153184  T
Q  174 ctttgttcctctcagattgagaaagctcttcagtcatggcttcaatcca 222  Q
    ||||||| |  ||| |||||||||| |||||  ||||||| ||||||||    
T  153183 ctttgtttcgttcaaattgagaaagttcttccttcatggcctcaatcca 153135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 99976 - 100076
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    ||||||||| ||  ||||||| || ||||| || |||||||||| ||| || || | ||||| |||||||||||| || |||||||||||||||||||||    
T  99976 ttgttgattgtacccttgagctaccaatctagctttgtttctgataacttttccttcttcatttagtttatttctaaatacccatcttgttccaatgatg 100075  T
Q  140 g 140  Q
    |    
T  100076 g 100076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 40 - 135
Target Start/End: Complemental strand, 261180 - 261085
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaat 135  Q
    ||||||||| ||  |||| ||||||||||| || || ||||||| ||| || || | |||||||||||||||||| || |||||||||||||||||    
T  261180 ttgttgattgtagccttgtgcaactaatctggctttatttctgataacttttccttcttcatctagtttatttctaaaaacccatcttgttccaat 261085  T

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Target: scaffold0010; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 40 - 135
Target Start/End: Complemental strand, 263483 - 263388
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaat 135  Q
    ||||||||| ||  |||| ||||||||||| |  || ||||||| ||| || || | |||||||||||||||||| || |||||||||||||||||    
T  263483 ttgttgattgtagccttgtgcaactaatctggttttatttctgataacttttccttcttcatctagtttatttctaaaaacccatcttgttccaat 263388  T

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Target: scaffold0233 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 140
Target Start/End: Complemental strand, 6994 - 6894
Alignment:
Q  40 ttgttgattataatcttgagcaactaatcttgccttgtttctgacaaccttaccattttcatctagtttatttctgaacacccatcttgttccaatgatg 139  Q
    ||||||||| ||  ||||||| || ||||| || |||||||||| ||| || || | ||||| |||||||||||| || | |||||||||||||||||||    
T  6994 ttgttgattgtacccttgagctaccaatctagctttgtttctgataacttttccttcttcatttagtttatttctaaatatccatcttgttccaatgatg 6895  T
Q  140 g 140  Q
    |    
T  6894 g 6894  T

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Target: scaffold0021 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 167546 - 167490
Alignment:
Q  97 ttcatctagtttatttctgaacacccatcttgttccaatgatggttttgtcttgagg 153  Q
    |||||||||||| ||||| || |||||||||||||||||||| ||||  ||||||||    
T  167546 ttcatctagtttgtttctaaaaacccatcttgttccaatgattgtttgatcttgagg 167490  T

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