View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9455_high_4 (Length: 239)

Name: NF9455_high_4
Description: NF9455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9455_high_4
NF9455_high_4
[»] chr2 (6 HSPs)
chr2 (1-222)||(5534352-5534573)
chr2 (1-42)||(9548273-9548314)
chr2 (1-42)||(10664754-10664795)
chr2 (1-44)||(24314262-24314305)
chr2 (1-42)||(12725780-12725821)
chr2 (1-42)||(12895378-12895419)
[»] chr3 (13 HSPs)
chr3 (3-42)||(4126023-4126062)
chr3 (1-42)||(3283341-3283382)
chr3 (1-42)||(19228613-19228654)
chr3 (1-42)||(20513100-20513141)
chr3 (2-42)||(11238716-11238756)
chr3 (3-42)||(8351102-8351141)
chr3 (1-40)||(13700319-13700358)
chr3 (1-39)||(19855517-19855555)
chr3 (3-44)||(35180621-35180662)
chr3 (1-34)||(36227849-36227882)
chr3 (1-42)||(45408296-45408337)
chr3 (1-42)||(54253864-54253905)
chr3 (1-41)||(41355464-41355504)
[»] chr7 (10 HSPs)
chr7 (1-42)||(31953208-31953249)
chr7 (1-42)||(35983156-35983197)
chr7 (1-42)||(36004568-36004609)
chr7 (1-42)||(5995118-5995159)
chr7 (1-38)||(24251882-24251919)
chr7 (1-42)||(41378436-41378477)
chr7 (1-42)||(35221730-35221771)
chr7 (1-38)||(46003797-46003834)
chr7 (1-37)||(27131051-27131087)
chr7 (1-41)||(45100021-45100061)
[»] chr8 (9 HSPs)
chr8 (1-49)||(19922553-19922601)
chr8 (1-42)||(10078354-10078395)
chr8 (1-42)||(26912388-26912429)
chr8 (3-42)||(28969168-28969207)
chr8 (3-42)||(38092151-38092190)
chr8 (1-42)||(14916728-14916769)
chr8 (1-42)||(22812388-22812429)
chr8 (1-42)||(30774175-30774216)
chr8 (1-42)||(44873962-44874003)
[»] scaffold0004 (1 HSPs)
scaffold0004 (3-42)||(121701-121740)
[»] chr4 (12 HSPs)
chr4 (2-44)||(28755435-28755477)
chr4 (1-42)||(13387033-13387074)
chr4 (1-42)||(32868034-32868075)
chr4 (1-41)||(13372422-13372462)
chr4 (1-41)||(13382623-13382663)
chr4 (2-42)||(32626132-32626172)
chr4 (1-42)||(27907039-27907080)
chr4 (1-38)||(34728289-34728326)
chr4 (1-42)||(42434298-42434339)
chr4 (1-42)||(51702506-51702547)
chr4 (1-37)||(43837759-43837795)
chr4 (1-37)||(47960364-47960400)
[»] chr5 (8 HSPs)
chr5 (1-42)||(20269283-20269324)
chr5 (1-42)||(23204426-23204467)
chr5 (1-39)||(37172460-37172498)
chr5 (1-42)||(9741775-9741816)
chr5 (1-42)||(19325106-19325147)
chr5 (1-42)||(26730372-26730413)
chr5 (1-42)||(28038272-28038313)
chr5 (2-42)||(16994208-16994248)
[»] chr1 (10 HSPs)
chr1 (1-42)||(1838727-1838768)
chr1 (1-42)||(25671043-25671084)
chr1 (1-42)||(42470806-42470847)
chr1 (1-42)||(43939518-43939559)
chr1 (1-42)||(2964928-2964969)
chr1 (1-38)||(7336124-7336161)
chr1 (1-38)||(10769835-10769872)
chr1 (1-42)||(14463369-14463410)
chr1 (1-42)||(17452962-17453003)
chr1 (1-37)||(30819579-30819615)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-42)||(392455-392496)
[»] chr6 (3 HSPs)
chr6 (1-42)||(15081170-15081211)
chr6 (1-42)||(18096380-18096421)
chr6 (1-42)||(18102500-18102541)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5534352 - 5534573
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcataaatatattccgccactacacaacttcttttgcataattggttcacattgaaaaccata 100  Q
    ||||||||||||||||||| | | ||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5534352 ccttcataaaaattaattggtattttttaacaaatgctcatgcatatattccgccactacacaacttcttttgcataattggttcacattgaaaaccata 5534451  T
Q  101 cataacaaataattgagaggtgtatatatgacacatgcacttcttaactttatgtatttggatggatgaatcaagaggcatgtggtaccacttactctca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5534452 cataacaaataattgagaggtgtatatatgacacatgcacttcttaactttatgtatttggatggatgaatcaagaggcatgtggtaccacttactctca 5534551  T
Q  201 atttgtggtcctagtggcagat 222  Q
    ||||||||||||||||||||||    
T  5534552 atttgtggtcctagtggcagat 5534573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 9548273 - 9548314
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  9548273 ccttcataaaaattagttggtgtcttttagcaaatgctcata 9548314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10664754 - 10664795
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  10664754 ccttcataaaaattagttggtgtcttttagcaaatgctcata 10664795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 24314305 - 24314262
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcataaa 44  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||||    
T  24314305 ccttcataaaaattagttggtgtcttttaacaaatgctcataaa 24314262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12725780 - 12725821
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| |||||||||| |||||||||||    
T  12725780 ccttcataaaaattagttggtgtcttttagtaaatgctcata 12725821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12895419 - 12895378
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||    
T  12895419 ccttcataaaaattagttggtgtcttttaacaaatgctcata 12895378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 4126062 - 4126023
Alignment:
Q  3 ttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4126062 ttcataaaaattaattgatgtcttttagcaaatgctcata 4126023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 3283341 - 3283382
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  3283341 ccttcataaaaattagttggtgtcttttagcaaatgctcata 3283382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19228654 - 19228613
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  19228654 ccttcataaaaattagttggtgtcttttagcaaatgctcata 19228613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 20513100 - 20513141
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||||||| ||||||||| ||||||||||||    
T  20513100 ccttcataaaaattaattggtgtcttttaacaaatgctcata 20513141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 11238756 - 11238716
Alignment:
Q  2 cttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    |||||||||||||| ||||||||||||| ||||||||||||    
T  11238756 cttcataaaaattagttgatgtcttttaacaaatgctcata 11238716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 8351141 - 8351102
Alignment:
Q  3 ttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  8351141 ttcataaaaattagttggtgtcttttagcaaatgctcata 8351102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13700319 - 13700358
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctca 40  Q
    ||||||||||||||| ||| ||||||||||||||||||||    
T  13700319 ccttcataaaaattagttggtgtcttttagcaaatgctca 13700358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 19855555 - 19855517
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctc 39  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  19855555 ccttcataaaaattagttggtgtcttttagcaaatgctc 19855517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 35180662 - 35180621
Alignment:
Q  3 ttcataaaaattaattgatgtcttttagcaaatgctcataaa 44  Q
    ||||||||||||||||||||| ||||| |||||||| |||||    
T  35180662 ttcataaaaattaattgatgtattttaacaaatgctaataaa 35180621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 36227882 - 36227849
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaa 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  36227882 ccttcataaaaattaattggtgtcttttagcaaa 36227849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 45408337 - 45408296
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||  ||||||||||||||||||||||    
T  45408337 ccttcataaaaattagtttgtgtcttttagcaaatgctcata 45408296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 54253864 - 54253905
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| |||||||||| |||||||||||    
T  54253864 ccttcataaaaattagttggtgtcttttaggaaatgctcata 54253905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41355504 - 41355464
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcat 41  Q
    ||||||||||||||| ||| ||||||||| |||||||||||    
T  41355504 ccttcataaaaattagttggtgtcttttaacaaatgctcat 41355464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 31953249 - 31953208
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  31953249 ccttcataaaaattaattgatgtcttttaacaaatgctcata 31953208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 35983197 - 35983156
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  35983197 ccttcataaaaattaattggtgtcttttagcaaatgctcata 35983156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 36004609 - 36004568
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  36004609 ccttcataaaaattaattggtgtcttttagcaaatgctcata 36004568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5995118 - 5995159
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  5995118 ccttcataaaaattagttggtgtcttttagcaaatgctcata 5995159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24251919 - 24251882
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgct 38  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  24251919 ccttcataaaaattaattggtgtcttttagcaaatgct 24251882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41378436 - 41378477
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||||||| |||||||||||||||| |||||    
T  41378436 ccttcataaaaattaattggtgtcttttagcaaatgttcata 41378477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35221730 - 35221771
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||    
T  35221730 ccttcataaaaattagttggtgtcttttaacaaatgctcata 35221771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 46003797 - 46003834
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgct 38  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  46003797 cctttataaaaattagttgatgtcttttagcaaatgct 46003834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 27131087 - 27131051
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgc 37  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  27131087 ccttcataaaaattagttggtgtcttttagcaaatgc 27131051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 45100061 - 45100021
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcat 41  Q
    ||||||||||||||| ||| ||||||||| |||||||||||    
T  45100061 ccttcataaaaattagttggtgtcttttaacaaatgctcat 45100021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 19922601 - 19922553
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcataaatatat 49  Q
    ||||||||||||||||||| ||||||||| |||||||||||| ||||||    
T  19922601 ccttcataaaaattaattggtgtcttttaacaaatgctcatatatatat 19922553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10078395 - 10078354
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  10078395 ccttcataaaaattagttggtgtcttttagcaaatgctcata 10078354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26912388 - 26912429
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  26912388 ccttcataaaaattagttggtgtcttttagcaaatgctcata 26912429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 28969168 - 28969207
Alignment:
Q  3 ttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  28969168 ttcataaaaattaattggtgtcttttaacaaatgctcata 28969207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 38092190 - 38092151
Alignment:
Q  3 ttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  38092190 ttcataaaaattaattggtgtcttttaacaaatgctcata 38092151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 14916728 - 14916769
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| | ||||||||||||||||||||    
T  14916728 ccttcataaaaattagttggtatcttttagcaaatgctcata 14916769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 22812388 - 22812429
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||    
T  22812388 ccttcataaaaattagttggtgtcttttaacaaatgctcata 22812429  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30774216 - 30774175
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| | ||||||||||||||||||||    
T  30774216 ccttcataaaaattagttggtatcttttagcaaatgctcata 30774175  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 44874003 - 44873962
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    |||||||||||||||  || ||||||||||||||||||||||    
T  44874003 ccttcataaaaattagctggtgtcttttagcaaatgctcata 44873962  T

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Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 121701 - 121740
Alignment:
Q  3 ttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  121701 ttcataaaaattaattggtgtcttttagcaaatgctcata 121740  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 28755477 - 28755435
Alignment:
Q  2 cttcataaaaattaattgatgtcttttagcaaatgctcataaa 44  Q
    |||||||||||||||||| ||||||||| ||||||||||||||    
T  28755477 cttcataaaaattaattggtgtcttttaacaaatgctcataaa 28755435  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 13387074 - 13387033
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  13387074 ccttcataaaaattagttggtgtcttttagcaaatgctcata 13387033  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 32868075 - 32868034
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  32868075 ccttcataaaaattagttggtgtcttttagcaaatgctcata 32868034  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 13372462 - 13372422
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcat 41  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  13372462 ccttcataaaaattagttggtgtcttttagcaaatgctcat 13372422  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 13382663 - 13382623
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcat 41  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  13382663 ccttcataaaaattagttggtgtcttttagcaaatgctcat 13382623  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 32626132 - 32626172
Alignment:
Q  2 cttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
T  32626132 cttcataaaaattagttggtgtcttttagcaaatgctcata 32626172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27907080 - 27907039
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||    
T  27907080 ccttcataaaaattagttggtgtcttttaacaaatgctcata 27907039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34728289 - 34728326
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgct 38  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  34728289 ccttcataaaaattagttggtgtcttttagcaaatgct 34728326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 42434298 - 42434339
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||    
T  42434298 ccttcataaaaattagttggtgtcttttaacaaatgctcata 42434339  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 51702547 - 51702506
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| | ||||||||||||||||||||    
T  51702547 ccttcataaaaattagttggtttcttttagcaaatgctcata 51702506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43837759 - 43837795
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgc 37  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  43837759 ccttcataaaaattagttggtgtcttttagcaaatgc 43837795  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 47960364 - 47960400
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgc 37  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  47960364 ccttcataaaaattagttggtgtcttttagcaaatgc 47960400  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 20269324 - 20269283
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||||||| |||||||||||||||| |||||    
T  20269324 ccttcataaaaattaattgttgtcttttagcaaatgttcata 20269283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 23204467 - 23204426
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||||||||||||| ||||||||||||    
T  23204467 ccttcataaaaattagttgatgtcttttaacaaatgctcata 23204426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 37172460 - 37172498
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctc 39  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  37172460 ccttcataaaaattagttggtgtcttttagcaaatgctc 37172498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9741816 - 9741775
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||    
T  9741816 ccttcataaaaattagttggtgttttttagcaaatgctcata 9741775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19325106 - 19325147
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| | ||||||||||||||||||||    
T  19325106 ccttcataaaaattagttggtttcttttagcaaatgctcata 19325147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26730372 - 26730413
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||    
T  26730372 ccttcataaaaattagttggtgtcttttaacaaatgctcata 26730413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28038272 - 28038313
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||| ||||||||||||||||||    
T  28038272 ccttcataaaaattagttggtgtgttttagcaaatgctcata 28038313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 16994208 - 16994248
Alignment:
Q  2 cttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    |||||||||||||| ||| ||||||||| ||||||||||||    
T  16994208 cttcataaaaattagttggtgtcttttaacaaatgctcata 16994248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1838727 - 1838768
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  1838727 ccttcataaaaattagttggtgtcttttagcaaatgctcata 1838768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25671043 - 25671084
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  25671043 ccttcataaaaattagttggtgtcttttagcaaatgctcata 25671084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42470847 - 42470806
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  42470847 ccttcataaaaattagttggtgtcttttagcaaatgctcata 42470806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 43939518 - 43939559
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||||||| ||||||||| ||||||||||||    
T  43939518 ccttcataaaaattaattggtgtcttttaacaaatgctcata 43939559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2964928 - 2964969
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| |||||||||||||||| |||||    
T  2964928 ccttcataaaaattagttggtgtcttttagcaaatgttcata 2964969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7336124 - 7336161
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgct 38  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  7336124 ccttcataaaaattaattggtgtcttttaacaaatgct 7336161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10769835 - 10769872
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgct 38  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  10769835 ccttcataaaaattagttggtgtcttttagcaaatgct 10769872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14463410 - 14463369
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||  ||||||||||||||||||||||    
T  14463410 ccttcataaaaattagttagtgtcttttagcaaatgctcata 14463369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17452962 - 17453003
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    |||||| |||||||| ||| ||||||||||||||||||||||    
T  17452962 ccttcacaaaaattagttggtgtcttttagcaaatgctcata 17453003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30819579 - 30819615
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgc 37  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  30819579 ccttcataaaaattagttggtgtcttttagcaaatgc 30819615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 392496 - 392455
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||| ||||| ||| ||||||||||||||||||||||    
T  392496 ccttcataataattagttggtgtcttttagcaaatgctcata 392455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 15081211 - 15081170
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||| ||||||||| ||||||||| ||||||||||||    
T  15081211 ccttcataacaattaattggtgtcttttaacaaatgctcata 15081170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18096421 - 18096380
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||    
T  18096421 ccttcataaaaattagttggtgtcttttaacaaatgctcata 18096380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18102541 - 18102500
Alignment:
Q  1 ccttcataaaaattaattgatgtcttttagcaaatgctcata 42  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||    
T  18102541 ccttcataaaaattagttggtgtcttttaacaaatgctcata 18102500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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