View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9455_low_12 (Length: 229)
Name: NF9455_low_12
Description: NF9455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9455_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 29308072 - 29307962
Alignment:
| Q |
70 |
gttacttgaacaaccggtagccgaataaaatgtttaaaaagaggatgatgtggcccaatcagagagagtgtggttaagagagtgtgttagagagtttgac |
169 |
Q |
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| T |
29308072 |
gttacttgaacaaccggtagccgaataaaatgtttaaaaagaggatgacatggcccaattagagagagtgtggttaagggagtgtatttgagagtttgac |
29307973 |
T |
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| Q |
170 |
catagcattcc |
180 |
Q |
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|||| |||||| |
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| T |
29307972 |
cataacattcc |
29307962 |
T |
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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 32399792 - 32399687
Alignment:
| Q |
73 |
acttgaacaaccggtagccgaataaaatgtt-taaaaagaggatgatgtggcccaatcagagagagtgtggttaagagagtgtgttagagagtttgacca |
171 |
Q |
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| T |
32399792 |
acttgaacaaccggtggccaaataaaatgttataaaaagatgatgatgtggcccaatcagagagagtgt-gacaagggagtgtgtttgagagtttgacta |
32399694 |
T |
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| Q |
172 |
tagcatt |
178 |
Q |
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||||||| |
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| T |
32399693 |
tagcatt |
32399687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 44553267 - 44553235
Alignment:
| Q |
148 |
agagtgtgttagagagtttgaccatagcattcc |
180 |
Q |
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| T |
44553267 |
agagtgtgttagagagtgtgaccatagcattcc |
44553235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Original strand, 33771592 - 33771638
Alignment:
| Q |
132 |
agagagtgtggttaagagagtgtgttagagagtttgaccatagcatt |
178 |
Q |
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|||||||||| |||| |||||||||||||||||||| | |||||||| |
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| T |
33771592 |
agagagtgtgtttaatagagtgtgttagagagtttgtcaatagcatt |
33771638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 19750169 - 19750201
Alignment:
| Q |
148 |
agagtgtgttagagagtttgaccatagcattcc |
180 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
19750169 |
agagtgtgttagagagtgtgaccatagcattcc |
19750201 |
T |
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