View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9455_low_2 (Length: 402)
Name: NF9455_low_2
Description: NF9455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9455_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 4 - 391
Target Start/End: Original strand, 28319528 - 28319913
Alignment:
| Q |
4 |
tttagtacttaaggtctctggtcaggtcaactatgatcttagctaagaacatcaaagacactcattcaatctctgggtgactactacaaattaggtattt |
103 |
Q |
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| T |
28319528 |
tttagtacttaaggtctgtggtcaggtcaactatgatcttagctaagaacatcaaagacactcattcaatctctgggtgagtactacaaattaggtattt |
28319627 |
T |
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| Q |
104 |
atagtcaatatgctattcacaattagtaattcagaaatgtgatcacaagtggagattttgttcaacttcatctatacttttcattgagcattaacaagta |
203 |
Q |
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| T |
28319628 |
atcgtcaatatgctattcacaattagtaattcagaaatgtgatcacaagtggagattttgttcaacttcatctatactt--cagtgagcattaacaagta |
28319725 |
T |
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| Q |
204 |
cgatgatttggttttccattcatatggtgtgaattaaattggacctattaattgatgttctagctacaactaaattgcaacactaggatgattttcttct |
303 |
Q |
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| T |
28319726 |
cgatgatttggttttccattcatatggtgtgaattaaattggacctattaattgatgttctagctacaactaaattacaacactaggatgattttcttct |
28319825 |
T |
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| Q |
304 |
taagaaaattcttggaaaaatgctccaacctttcttagttttagtcagcttcttaagctcatttctaatgcttgaacattccttctct |
391 |
Q |
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| T |
28319826 |
taagaaaattcttggaaaaatgctccaacctttcttagttttagtcagcttcttaagctcatttctaatgcttgaacattccttctct |
28319913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 390
Target Start/End: Complemental strand, 5951505 - 5951430
Alignment:
| Q |
315 |
ttggaaaaatgctccaacctttcttagttttagtcagcttcttaagctcatttctaatgcttgaacattccttctc |
390 |
Q |
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|||||||||||||||||| |||||| ||||| || ||||||| | ||| |||| ||||||||||||||| ||||| |
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| T |
5951505 |
ttggaaaaatgctccaacttttctttgtttttgttagcttctgcaactcttttcgaatgcttgaacattctttctc |
5951430 |
T |
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