View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9455_low_4 (Length: 351)
Name: NF9455_low_4
Description: NF9455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9455_low_4 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 3576220 - 3575897
Alignment:
| Q |
18 |
ggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaagataacttggac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3576220 |
ggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaagataacttggac |
3576121 |
T |
|
| Q |
118 |
agcccatatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccac |
217 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3576120 |
agcccatatagcaaggatactttgtgcgtggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccac |
3576021 |
T |
|
| Q |
218 |
acagcctcgccgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtgtatgacctcgagtt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
3576020 |
acagcctcgccgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtggatgacctcgagtt |
3575921 |
T |
|
| Q |
318 |
cacggttcttggcaaatgtctctg |
341 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
3575920 |
cacggttcttggcaaatgtctctg |
3575897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 3584998 - 3585321
Alignment:
| Q |
18 |
ggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaagataacttggac |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
3584998 |
ggtcaaagcttccacctggatagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccttcaacagctcccattaagataacttggac |
3585097 |
T |
|
| Q |
118 |
agcccatatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccac |
217 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
3585098 |
agcccaaatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtccaccctcactaaagatttgagatcctgccttaaaccac |
3585197 |
T |
|
| Q |
218 |
acagcctcgccgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtgtatgacctcgagtt |
317 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||| || |||||||||||||| || || || ||||||||||||||||| || ||||||||||||| |
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|
| T |
3585198 |
acagcctcaccgaatttcacaccattgcgagccaagagttctgggaagacacatcctaaggcacccaacatagcccatctactatgaatgacctcgagtt |
3585297 |
T |
|
| Q |
318 |
cacggttcttggcaaatgtctctg |
341 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
3585298 |
cacggtttttggcaaatgtctctg |
3585321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 3564241 - 3563918
Alignment:
| Q |
18 |
ggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaagataacttggac |
117 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3564241 |
ggtcaaagctgccacctgggtagagtgggtcaaccacctcaccgagaggtccaccagcaatacggtaaccctcaacagcacccattaagataacttggac |
3564142 |
T |
|
| Q |
118 |
agcccatatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
3564141 |
agcccatatagcaaggatgctttgtgcatggactagacttgggttacccaagtagtcaagcccaccctcactaaaaatttgggatcctgccttgaaccat |
3564042 |
T |
|
| Q |
218 |
acagcctcgccgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtgtatgacctcgagtt |
317 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| || || |||||||||||||||||||| ||||||||||||| |
|
|
| T |
3564041 |
acagcctcgccgaatttgacaccattgcgagataagagctcagggaagacacatcccaaggcacccaacatagcccatctactgtggatgacctcgagtt |
3563942 |
T |
|
| Q |
318 |
cacggttcttggcaaatgtctctg |
341 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
3563941 |
cacggtttttggcaaatgtctctg |
3563918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 3569889 - 3569566
Alignment:
| Q |
18 |
ggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaagataacttggac |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||| || || |||||||||||||||||||| |
|
|
| T |
3569889 |
ggtcaaagctgccacctgggtagagtggatcgactacctcgcctagaggtccaccagcaatacggtaaccctccacggcgcccattaagataacttggac |
3569790 |
T |
|
| Q |
118 |
agcccatatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3569789 |
tgcccatatagcaaggatgctttgtgcatggactagacttgggttacccaagtagtcaagtccaccctcactaaagatttgggatcctgccttgaaccac |
3569690 |
T |
|
| Q |
218 |
acagcctcgccgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtgtatgacctcgagtt |
317 |
Q |
| |
|
|| ||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||| || || |||||||||||||||||||| ||||||||||||| |
|
|
| T |
3569689 |
acggcctcaccgaattgtacaccattgcgagataagagctcagggaagacacatcccaaggcacccaacatagcccatctactgtggatgacctcgagtt |
3569590 |
T |
|
| Q |
318 |
cacggttcttggcaaatgtctctg |
341 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
3569589 |
cacggttcttggcaaatgtctctg |
3569566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 3572936 - 3572630
Alignment:
| Q |
18 |
ggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaagataacttggac |
117 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
3572936 |
ggtcaaaactaccacctgggtagagtgggtcgacaacctcaccgagaggtccacctgcaatacgataaccctcaacagcacccattaagataacttggac |
3572837 |
T |
|
| Q |
118 |
agcccatatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3572836 |
agcccatatagcaaggatgctttgtgcatggactagacttggatttcccaagtagtcaagtccaccctcactaaagatttgagatcctgccttgaaccac |
3572737 |
T |
|
| Q |
218 |
acagcctcgccgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtgtatgacctcgagtt |
317 |
Q |
| |
|
|| ||||| |||||||| ||||||||||||| ||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| |||||||| |||| |
|
|
| T |
3572736 |
acggcctcaccgaatttaacaccattgcgagccaagagctcagggaagacacatcccaaggctcccaacatagcccacctactgtgaatgacctctagtt |
3572637 |
T |
|
| Q |
318 |
cacggtt |
324 |
Q |
| |
|
||||||| |
|
|
| T |
3572636 |
cacggtt |
3572630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 3578076 - 3577894
Alignment:
| Q |
18 |
ggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaagataacttggac |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
3578076 |
ggtcaaagcttccaccggggtagagtggatcgactacctcaccaagaggtccatcggcaatacggtaaccctcaacagctcccattaagatagctaggac |
3577977 |
T |
|
| Q |
118 |
agcccatatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgag |
200 |
Q |
| |
|
| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
3577976 |
aacccaaatagcaaggatgctttgtgcgtggactaggcttgggttacccaagtagtcaagccctccatcactaaagatttgag |
3577894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 13276167 - 13275968
Alignment:
| Q |
18 |
ggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaagataacttggac |
117 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
13276167 |
ggtcgaagctaccacctgggtagagtgggtcaatcacctcaccaagaggtccaccagcaatacggtaaccctcaacagcacccatcaagataacttggca |
13276068 |
T |
|
| Q |
118 |
agcccatatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccac |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||| || || |||||||| ||||| ||||| || || ||||||||||||||||| || | |||||||||||| |
|
|
| T |
13276067 |
ggcccatatggcaaggatgctttgtgcatgtacaagacttgggttgcccaaatagtctagcccaccctcactaaagatttgggacctggccttgaaccac |
13275968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 38357256 - 38356933
Alignment:
| Q |
18 |
ggtcaaagcttccacctgggtagagtgggtcgactacctcaccaagaggtccaccggcaatacggtaaccctcaacagctcccattaagataacttggac |
117 |
Q |
| |
|
|||||||||| || |||||||| |||||||| || |||||||||||||| ||||| |||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
38357256 |
ggtcaaagctgcctcctgggtatagtgggtcaacaacctcaccaagaggaccaccagcaatacggtaaccttcaacagcgcccatcaagataacttgggt |
38357157 |
T |
|
| Q |
118 |
agcccatatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccac |
217 |
Q |
| |
|
|||||| || ||||| ||||| || |||||||| | |||||||||||||||||||||||||| ||||| |||||||| || ||||| ||||||||||| |
|
|
| T |
38357156 |
agcccagatggcaagaatgctctgagcatggaccaaacttgggttacccaagtagtcaagtccaccctcgctaaagatctgggatccggccttgaaccat |
38357057 |
T |
|
| Q |
218 |
acagcctcgccgaatttcacaccattgcgagacaagagctcggggaagacacatcccaaagctcctaacatagcccatctactgtgtatgacctcgagtt |
317 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| ||||| ||||| ||||||||||| ||||| ||||||||||| ||||| || ||||| || |||| |
|
|
| T |
38357056 |
acagcctcaccgaatttaacaccattgcgagacaaaagctctgggaaaacacatcccaaggctcccaacatagcccacctactatggatgacttcaagtt |
38356957 |
T |
|
| Q |
318 |
cacggttcttggcaaatgtctctg |
341 |
Q |
| |
|
||||||||||||| |||||||||| |
|
|
| T |
38356956 |
cacggttcttggcgaatgtctctg |
38356933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 42602953 - 42602831
Alignment:
| Q |
118 |
agcccatatagcaaggatgctttgtgcatggactaggcttgggttacccaagtagtcaagtcctccctcactaaagatttgagatcctgccttgaaccac |
217 |
Q |
| |
|
|||||| || ||||| ||||| || ||||||| ||| ||||||| ||||| |||||||| || |||||| ||||| || | || ||||| |||||| |
|
|
| T |
42602953 |
agcccagattgcaagaatgctctgagcatggatcaggtttgggttgcccaaatagtcaaggccaccctcagagaagatctgggcaccagccttaaaccac |
42602854 |
T |
|
| Q |
218 |
acagcctcgccgaatttcacacc |
240 |
Q |
| |
|
|||||||| |||||||| ||||| |
|
|
| T |
42602853 |
acagcctcaccgaatttaacacc |
42602831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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