View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9455_low_5 (Length: 270)
Name: NF9455_low_5
Description: NF9455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9455_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 5533959 - 5534206
Alignment:
| Q |
1 |
agtagaaatttaaattgaagtttcaagttaaagtaaaagataaaacaacattacatttattacannnnnnnaaaggcaacgttacattgttttagttata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
5533959 |
agtagaaatttaaattgaagtttcaagttaaagtaaaagataaaacaacattacatttttt---------taaaggcaacgttacattgttttagttata |
5534049 |
T |
|
| Q |
101 |
aaagtagtacaagaaaaggggcaattgggtcctctcatattttcaaacaataattaaaaggggacctccttccctctgctctttcctcttcctctcaaac |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5534050 |
aaagtagtacaagaaaaggggcaatcgggtcctctcacattttcaaacaataattaaaaggggacctccttccctctgctctttcctcttcctctcaaac |
5534149 |
T |
|
| Q |
201 |
aagtacttaatcaaagacttctcatacggaatcatggctataattttaatacacaca |
257 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5534150 |
aagtacttaatcaaagacttctcatacggcatcatggctataattttaatacacaca |
5534206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University