View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9456_low_12 (Length: 291)

Name: NF9456_low_12
Description: NF9456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9456_low_12
NF9456_low_12
[»] chr6 (2 HSPs)
chr6 (18-291)||(10978663-10978936)
chr6 (111-159)||(32930426-32930474)
[»] chr5 (2 HSPs)
chr5 (70-163)||(18608810-18608903)
chr5 (111-159)||(26070587-26070635)
[»] chr2 (4 HSPs)
chr2 (46-170)||(34077040-34077164)
chr2 (81-129)||(29862290-29862338)
chr2 (83-129)||(22115397-22115443)
chr2 (86-127)||(28413963-28414004)
[»] chr4 (1 HSPs)
chr4 (46-130)||(19217927-19218011)
[»] chr3 (3 HSPs)
chr3 (86-159)||(26484782-26484855)
chr3 (19-159)||(31286274-31286412)
chr3 (102-146)||(31279068-31279112)


Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 10978936 - 10978663
Alignment:
Q  18 cttgggactggggacatgatttttcaaaattgttttgtctttaaaaacctccttgagctccacttatcttcattctcttgccttcataactcaatgtaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978936 cttgggactggggacatgatttttcaaaattgttttgtctttaaaaacctccttgagctccacttatcttcattctcttgccttcataactcaatgtaat 10978837  T
Q  118 gtcttgatttgccaaatttcataatttctcactaaaaagacttaaatgacttaattgaaaaacaatacaatgtatcccttaaaccatgataatctcctct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978836 gtcttgatttgccaaatttcataatttctcactaaaaagacttaaatgacttaattgaaaaacaatacaatgtatcccttaaaccatgataatctcctct 10978737  T
Q  218 aaaacatttgtagcatgacctcagactctaaataaatgactaaaaaacatagctaaatatcctatcatcacaac 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  10978736 aaaacatttgtagcatgacctcagactctaaataaatgactaaaaaacgtagctaaatatcctattatcacaac 10978663  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 32930426 - 32930474
Alignment:
Q  111 atgtaatgtcttgatttgccaaatttcataatttctcactaaaaagact 159  Q
    |||| |||||||| |||||||| || ||| |||||||||||||||||||    
T  32930426 atgtgatgtcttgttttgccaatttacatgatttctcactaaaaagact 32930474  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 163
Target Start/End: Complemental strand, 18608903 - 18608810
Alignment:
Q  70 ttgagctccacttatcttcattctcttgccttcataactcaatgtaatgtcttgatttgccaaatttcataatttctcactaaaaagacttaaa 163  Q
    |||| ||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||| |  | ||  |||||||||||||| | ||||||    
T  18608903 ttgaactccattgatcttcattctcttgccttcataactccatgtgatgtcttgatttgccgacctacacgatttctcactaaaatggcttaaa 18608810  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 26070635 - 26070587
Alignment:
Q  111 atgtaatgtcttgatttgccaaatttcataatttctcactaaaaagact 159  Q
    |||| |||||||| |||||||| || ||| |||||||||||||||||||    
T  26070635 atgtgatgtcttgttttgccaatttacatgatttctcactaaaaagact 26070587  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 34077164 - 34077040
Alignment:
Q  46 attgttttgtctttaaaaacctccttgagctccacttatcttcattctcttgccttcataactcaatgtaatgtcttgatttgccaaatttcataatttc 145  Q
    ||||| ||||||| |||||| | || ||||||||   |||||||||||||||  |  |||| || |||| |||||||| ||||||||||| ||| |||||    
T  34077164 attgtattgtcttcaaaaactttctcgagctccatggatcttcattctcttggttctataattccatgtgatgtcttggtttgccaaattacatgatttc 34077065  T
Q  146 tcactaaaaagacttaaatgactta 170  Q
    ||||||||| |||| ||| ||||||    
T  34077064 tcactaaaatgactcaaaagactta 34077040  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 29862290 - 29862338
Alignment:
Q  81 ttatcttcattctcttgccttcataactcaatgtaatgtcttgatttgc 129  Q
    |||||||||||||||| ||| |||||||| |||| ||||||||||||||    
T  29862290 ttatcttcattctctttcctccataactctatgtgatgtcttgatttgc 29862338  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 22115397 - 22115443
Alignment:
Q  83 atcttcattctcttgccttcataactcaatgtaatgtcttgatttgc 129  Q
    ||||||||| |||||||| |||||||| |||| ||||||||||||||    
T  22115397 atcttcattatcttgcctacataactctatgtgatgtcttgatttgc 22115443  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 28414004 - 28413963
Alignment:
Q  86 ttcattctcttgccttcataactcaatgtaatgtcttgattt 127  Q
    ||||||||||||||| |||||||| |||| ||||||||||||    
T  28414004 ttcattctcttgcctccataactctatgtgatgtcttgattt 28413963  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 19218011 - 19217927
Alignment:
Q  46 attgttttgtctttaaaaacctccttgagctccacttatcttcattctcttgccttcataactcaatgtaatgtcttgatttgcc 130  Q
    ||||| ||| ||| |||||||| ||||| ||||  | |||||||||||||||||| |||||||| | || |||||||||||||||    
T  19218011 attgtattgccttcaaaaaccttcttgaactcctttgatcttcattctcttgcctccataactccacgtgatgtcttgatttgcc 19217927  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 26484855 - 26484782
Alignment:
Q  86 ttcattctcttgccttcataactcaatgtaatgtcttgatttgccaaatttcataatttctcactaaaaagact 159  Q
    ||||||||||||||| |||||||| |||| ||||||||||||||| | || ||| |||| |||| |||| ||||    
T  26484855 ttcattctcttgcctgcataactccatgtgatgtcttgatttgccgatttacatgatttatcaccaaaatgact 26484782  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 31286274 - 31286412
Alignment:
Q  19 ttgggactggggacatgatttttcaaaattgttttgtctttaaaaacctccttgagctccacttatcttcattctcttgccttcataactcaatgtaatg 118  Q
    |||| ||| |||| || ||||||| | ||||| |||||||||||| |||  |||| ||||| | ||||||||||| || ||| |||||||||| |   |     
T  31286274 ttggaacttgggatattatttttccacattgtattgtctttaaaatccttattgaactccattgatcttcattctttttcctccataactcaacg--cta 31286371  T
Q  119 tcttgatttgccaaatttcataatttctcactaaaaagact 159  Q
    | |||||||||| |||| |||||||||| ||||||| ||||    
T  31286372 ttttgatttgccgaattacataatttcttactaaaatgact 31286412  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 31279068 - 31279112
Alignment:
Q  102 cataactcaatgtaatgtcttgatttgccaaatttcataatttct 146  Q
    ||||||||||||||||||||||||||| | |||| ||| ||||||    
T  31279068 cataactcaatgtaatgtcttgatttgtcgaattacatgatttct 31279112  T

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