View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9456_low_14 (Length: 242)
Name: NF9456_low_14
Description: NF9456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9456_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 33720585 - 33720434
Alignment:
| Q |
73 |
tggtatcatctgaaagctccttttcattaacattagactttctatcctcaaattttttcacaatttctctttatctatcacaatctcttccttaacatat |
172 |
Q |
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| T |
33720585 |
tggtatcatctgaaagctccttttcattaacattagactttctatcctcaaatttttccaaaatttctctttatctatcacaatctcttccttaacataa |
33720486 |
T |
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| Q |
173 |
tgtttatattgagtaattggatttatttgcaacatttgatttatggggaaag |
224 |
Q |
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| T |
33720485 |
tgtttctatggagtaattggatttatttgcaacatttgatttctggggaaag |
33720434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 21147329 - 21147260
Alignment:
| Q |
89 |
ctccttttcattaacattagactttctatcctcaaattttttcacaatttctctttatctatcacaatct |
158 |
Q |
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| T |
21147329 |
ctcctcttccttaacattagactttctattctcaactttttcgtcaatttctctttctctatcacaatct |
21147260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 33710227 - 33710189
Alignment:
| Q |
30 |
gatgagagaattgcatttgattgtgagctaacttttaat |
68 |
Q |
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| T |
33710227 |
gatgagagaattgcatttgattatgagctaacttttaat |
33710189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 21212523 - 21212452
Alignment:
| Q |
89 |
ctccttttcattaacattagacttt-ctatcctcaaattttttca-caatttctctttatctatcacaatct |
158 |
Q |
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| T |
21212523 |
ctcctattccttaacattagacttttctattctcaacttttttcctcaatttctctttctctatcacaatct |
21212452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 21184423 - 21184361
Alignment:
| Q |
89 |
ctccttttcattaacattagactttctatcctcaaattttttcacaatttctctttatctatc |
151 |
Q |
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||||| ||| ||||||| ||||||||||| ||||| ||||| | |||||||||||| |||||| |
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| T |
21184423 |
ctcctcttccttaacatcagactttctattctcaactttttcctcaatttctctttctctatc |
21184361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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