View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9456_low_16 (Length: 232)

Name: NF9456_low_16
Description: NF9456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9456_low_16
NF9456_low_16
[»] chr7 (26 HSPs)
chr7 (16-187)||(21873762-21873933)
chr7 (16-188)||(7791526-7791698)
chr7 (16-188)||(47065152-47065324)
chr7 (16-188)||(32541397-32541568)
chr7 (16-188)||(42094766-42094938)
chr7 (16-129)||(10533288-10533401)
chr7 (16-160)||(34592355-34592500)
chr7 (16-129)||(46321383-46321496)
chr7 (16-160)||(46924550-46924694)
chr7 (16-159)||(8214958-8215101)
chr7 (16-188)||(32661585-32661757)
chr7 (16-188)||(40704723-40704895)
chr7 (16-160)||(40995835-40995978)
chr7 (18-122)||(7901115-7901219)
chr7 (16-188)||(39073656-39073828)
chr7 (16-95)||(40994209-40994288)
chr7 (16-95)||(43246336-43246415)
chr7 (16-188)||(19699668-19699839)
chr7 (16-95)||(38875455-38875534)
chr7 (16-188)||(35924777-35924949)
chr7 (16-129)||(26015161-26015274)
chr7 (16-188)||(27325512-27325683)
chr7 (16-188)||(38282931-38283104)
chr7 (16-188)||(21278268-21278441)
chr7 (45-188)||(25877481-25877624)
chr7 (44-160)||(47778798-47778914)
[»] chr8 (26 HSPs)
chr8 (16-188)||(11588748-11588920)
chr8 (16-188)||(34918084-34918256)
chr8 (16-188)||(37578871-37579043)
chr8 (16-188)||(43663605-43663777)
chr8 (16-160)||(24822016-24822160)
chr8 (16-160)||(39365930-39366074)
chr8 (16-188)||(15840441-15840613)
chr8 (16-188)||(17602294-17602467)
chr8 (16-188)||(26290033-26290205)
chr8 (16-188)||(26303290-26303462)
chr8 (16-188)||(26315284-26315456)
chr8 (16-96)||(16633891-16633971)
chr8 (16-95)||(5599240-5599319)
chr8 (16-95)||(5635956-5636035)
chr8 (16-95)||(26121958-26122037)
chr8 (16-188)||(3032198-3032370)
chr8 (16-122)||(8376867-8376973)
chr8 (18-123)||(34564383-34564488)
chr8 (16-129)||(35605987-35606100)
chr8 (16-95)||(42512831-42512910)
chr8 (30-129)||(23356615-23356714)
chr8 (16-160)||(3136525-3136670)
chr8 (51-188)||(26294413-26294550)
chr8 (51-188)||(26307670-26307807)
chr8 (45-188)||(12713392-12713535)
chr8 (16-95)||(5988797-5988877)
[»] chr5 (17 HSPs)
chr5 (16-188)||(6468969-6469141)
chr5 (16-159)||(25085649-25085792)
chr5 (16-129)||(25143621-25143734)
chr5 (16-160)||(33281499-33281643)
chr5 (16-160)||(31510738-31510881)
chr5 (16-188)||(37866522-37866694)
chr5 (16-188)||(38759660-38759832)
chr5 (16-159)||(43292978-43293121)
chr5 (16-129)||(4155469-4155582)
chr5 (16-187)||(9066330-9066500)
chr5 (16-129)||(29921089-29921202)
chr5 (16-94)||(13145250-13145328)
chr5 (16-129)||(19034040-19034159)
chr5 (16-188)||(19616878-19617041)
chr5 (44-160)||(43517586-43517702)
chr5 (56-159)||(24559771-24559874)
chr5 (56-95)||(24600804-24600843)
[»] chr2 (20 HSPs)
chr2 (16-188)||(35896402-35896574)
chr2 (16-160)||(37094710-37094854)
chr2 (16-188)||(25852653-25852825)
chr2 (16-160)||(32550906-32551050)
chr2 (16-188)||(42343608-42343778)
chr2 (16-188)||(2389935-2390106)
chr2 (16-188)||(21658567-21658738)
chr2 (16-129)||(43577579-43577692)
chr2 (16-188)||(927645-927816)
chr2 (16-129)||(3178887-3179000)
chr2 (16-129)||(13195513-13195626)
chr2 (16-160)||(1520865-1521009)
chr2 (16-188)||(39697079-39697251)
chr2 (16-129)||(40811048-40811161)
chr2 (16-129)||(44144056-44144169)
chr2 (16-95)||(1482513-1482592)
chr2 (16-95)||(34202951-34203030)
chr2 (16-81)||(27980312-27980377)
chr2 (16-81)||(28066842-28066907)
chr2 (16-129)||(10639383-10639496)
[»] chr1 (26 HSPs)
chr1 (16-188)||(2481926-2482098)
chr1 (16-160)||(44722552-44722696)
chr1 (16-188)||(34270037-34270209)
chr1 (16-188)||(34276272-34276444)
chr1 (16-187)||(40535923-40536094)
chr1 (16-160)||(2137663-2137807)
chr1 (16-160)||(11172647-11172791)
chr1 (23-188)||(15941497-15941662)
chr1 (16-188)||(24317826-24317997)
chr1 (16-188)||(39568652-39568823)
chr1 (16-129)||(39983017-39983130)
chr1 (16-188)||(28852103-28852275)
chr1 (16-160)||(52043698-52043841)
chr1 (13-188)||(20582240-20582414)
chr1 (16-96)||(50728502-50728582)
chr1 (16-95)||(26163888-26163967)
chr1 (20-160)||(33010010-33010150)
chr1 (16-160)||(49823846-49823990)
chr1 (16-188)||(6653756-6653927)
chr1 (16-188)||(42948837-42949009)
chr1 (16-122)||(51676555-51676660)
chr1 (16-129)||(14246574-14246687)
chr1 (16-129)||(52025297-52025410)
chr1 (16-95)||(18909821-18909900)
chr1 (16-188)||(40400671-40400844)
chr1 (53-188)||(13234595-13234730)
[»] chr6 (10 HSPs)
chr6 (16-188)||(7141860-7142032)
chr6 (16-188)||(18894391-18894563)
chr6 (16-188)||(25332153-25332325)
chr6 (16-160)||(6625980-6626124)
chr6 (16-188)||(6167252-6167423)
chr6 (16-159)||(13889339-13889482)
chr6 (23-129)||(29121690-29121796)
chr6 (51-160)||(25331634-25331743)
chr6 (16-95)||(3095193-3095273)
chr6 (16-95)||(29629858-29629938)
[»] chr4 (25 HSPs)
chr4 (16-188)||(19873356-19873528)
chr4 (16-188)||(20434759-20434931)
chr4 (16-188)||(28405715-28405887)
chr4 (16-188)||(43829524-43829695)
chr4 (16-160)||(42349347-42349491)
chr4 (16-188)||(42723410-42723582)
chr4 (16-188)||(52912429-52912601)
chr4 (16-188)||(55214872-55215044)
chr4 (16-188)||(55220514-55220686)
chr4 (16-188)||(56363350-56363522)
chr4 (16-188)||(20738394-20738565)
chr4 (16-188)||(56017717-56017889)
chr4 (16-121)||(38291228-38291333)
chr4 (16-95)||(23894557-23894636)
chr4 (16-160)||(46563781-46563924)
chr4 (16-188)||(37233441-37233614)
chr4 (16-95)||(39539829-39539908)
chr4 (16-188)||(55182796-55182968)
chr4 (16-129)||(614474-614590)
chr4 (16-122)||(53874379-53874485)
chr4 (16-129)||(52839050-52839163)
chr4 (16-188)||(1356321-1356494)
chr4 (16-188)||(10541383-10541557)
chr4 (57-188)||(5098717-5098848)
chr4 (16-59)||(25858309-25858352)
[»] chr3 (22 HSPs)
chr3 (16-188)||(22781077-22781249)
chr3 (16-188)||(33967566-33967738)
chr3 (16-188)||(37970941-37971113)
chr3 (20-188)||(10840662-10840830)
chr3 (20-188)||(41070535-41070703)
chr3 (16-160)||(25711575-25711719)
chr3 (16-160)||(38871772-38871916)
chr3 (16-188)||(32236947-32237119)
chr3 (16-160)||(33711980-33712123)
chr3 (20-188)||(36430967-36431135)
chr3 (16-122)||(20834845-20834951)
chr3 (16-95)||(4515366-4515445)
chr3 (16-188)||(4044045-4044217)
chr3 (16-159)||(24395846-24395989)
chr3 (16-188)||(20656522-20656694)
chr3 (53-188)||(7149235-7149370)
chr3 (16-160)||(20048955-20049100)
chr3 (16-95)||(40585484-40585564)
chr3 (16-188)||(672720-672883)
chr3 (16-129)||(10999078-10999192)
chr3 (16-129)||(53974929-53975032)
chr3 (56-95)||(6267664-6267703)
[»] scaffold0062 (1 HSPs)
scaffold0062 (16-188)||(41174-41346)
[»] scaffold0438 (1 HSPs)
scaffold0438 (16-188)||(1370-1542)
[»] scaffold0391 (1 HSPs)
scaffold0391 (16-95)||(4659-4738)
[»] scaffold0368 (1 HSPs)
scaffold0368 (16-188)||(14510-14682)
[»] scaffold0007 (1 HSPs)
scaffold0007 (16-95)||(156453-156522)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 21873933 - 21873762
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  21873933 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcaccgacaatgaataaaattagggttttaagaaaatttatataaaagggc 21873834  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaa 187  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| |||||||||||||||    
T  21873833 aattttggtattataaaaaagttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaa 21873762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 7791526 - 7791698
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  7791526 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 7791625  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||  |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  7791626 aattttgatattataaaaaacttttaagaaaatttgggtgtaaccagaaaatcatggggtgtaaatagaaaaa 7791698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 47065324 - 47065152
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  47065324 acatcaaattgtttgatcaatcgctttgtggggtaaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 47065225  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        || ||||||||||||||||||||       |||| ||||||||||||||||    
T  47065224 aattttggtattataattttttttaaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 47065152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 32541568 - 32541397
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  32541568 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 32541469  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||         ||||||||||||||||||||||       |||| ||||||||||||||||    
T  32541468 aattttggtattataaaaaaaa-ttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 32541397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 42094938 - 42094766
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  42094938 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 42094839  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        ||||| ||||||||||||||| |       |||| ||||||||||||||||    
T  42094838 aattttggtattataaaaaacttttaaaaaaatttgggtgtaatcagaaaaacatggggtgtaaatagaaaaa 42094766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 10533288 - 10533401
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  10533288 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 10533387  T
Q  116 aattttggaattat 129  Q
    |||||||| |||||    
T  10533388 aattttggtattat 10533401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 34592355 - 34592500
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggtttt-aaannnnnnnatataaaaggg 114  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||| |||       |||||||||||    
T  34592355 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaaaaaaaaattatataaaaggg 34592454  T
Q  115 caattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    ||||||||| |||||         ||||||||||||||||||||||    
T  34592455 caattttggtattataaaaaaaaattaagaaaatttgggtgtaacc 34592500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 46321496 - 46321383
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  46321496 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 46321397  T
Q  116 aattttggaattat 129  Q
    |||||||| |||||    
T  46321396 aattttggtattat 46321383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 46924550 - 46924694
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||||||| |||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  46924550 acatcaaattgtttgatcgatcactttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 46924649  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||||| |||||        ||||||||||||||||| |||||    
T  46924650 aattttggtattataaagataatttaagaaaatttgggtataacc 46924694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 8215101 - 8214958
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||| ||||||||| ||||||||        ||||||||||||    
T  8215101 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgtataaaattaaggttttaagaaaatttatataaaagggc 8215002  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaac 159  Q
    |||||||| |||||        ||||||||||||||||||||||    
T  8215001 aattttggtattataaaaaacttttaagaaaatttgggtgtaac 8214958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 32661757 - 32661585
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| ||||||||| ||||||        ||||| ||||||    
T  32661757 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaacaaaattaggcttttaagaaaatttatatagaagggc 32661658  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  32661657 aattttggtattataaattttttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 32661585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 40704895 - 40704723
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatgggg-taaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaaggg 114  Q
    ||||||||||||||||||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||    
T  40704895 acatcaaattgtttgatcgatcgctttgtgggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaaggg 40704796  T
Q  115 caattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    ||||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  40704795 caattttggtattat-aattttttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 40704723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 40995835 - 40995978
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        |||||||||| |    
T  40995835 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaaggac 40995934  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||||| |||||        |||||||||||||||||||||||    
T  40995935 aattttggtattat-aattttttttaagaaaatttgggtgtaacc 40995978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 7901115 - 7901219
Alignment:
Q  18 atcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggcaa 117  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||||    
T  7901115 atcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggcaa 7901214  T
Q  118 ttttg 122  Q
    |||||    
T  7901215 ttttg 7901219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 39073828 - 39073656
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatg-gggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaaggg 114  Q
    ||||||||||||||||||||||||||| || |||| |||||||||||||||||  ||||||||||||||||||||||||||        |||||||||||    
T  39073828 acatcaaattgtttgatcgatcgctttgtgagggtgaaagagggtgaaactca-tgacaatgaataaaattagggttttaagaaaatttatataaaaggg 39073730  T
Q  115 caattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    ||||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  39073729 caattttggtattataaaaaacttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 39073656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 40994288 - 40994209
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    ||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40994288 acatcaaattgtttgatcgttcgctttgtggggtgaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 40994209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 43246415 - 43246336
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  43246415 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaa 43246336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 19699668 - 19699839
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||| || ||||| |||||| ||||||| |||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  19699668 acatcaaattgtttgatcaatagctttgtggggtgaaagagg-tgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 19699766  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  19699767 aattttggtattataatttttttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 19699839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 38875534 - 38875455
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||| |||| ||||||||||||||||||||||||||    
T  38875534 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaattcactgacaatgaataaaattagggttttaa 38875455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 35924777 - 35924949
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||| ||| |||||||| ||| |||||| ||||| |||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  35924777 acatcaaatttttttatcgatcgttttgtggggtgaaagatggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 35924876  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||  |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  35924877 aattttgatattataaaaaaaatttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 35924949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 26015274 - 26015161
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||| ||||||||| ||| || |||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||     
T  26015274 acatcaaattgtttgattgatcgctttgtggagtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggt 26015175  T
Q  116 aattttggaattat 129  Q
    |||||||| |||||    
T  26015174 aattttggtattat 26015161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 27325512 - 27325683
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||| |||||||||||||||| |||| |||||| |||||||||||||||||| ||||||||||||||||| ||||||||        |||||||||| |    
T  27325512 acatcgaattgtttgatcgatcactttgtggggtgaaagagggtgaaactcactgacaatgaataaaattatggttttaagaaaatttatataaaaggac 27325611  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||         ||||||||||||||||||||||       |||| ||||||||||||||||    
T  27325612 aattttggtattataaaaaaaa-ttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 27325683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 38283104 - 38282931
Alignment:
Q  16 acatcaaattgtttgatcg--atcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagg 113  Q
    ||||||||||||||| |||  |||||||  |||||| |||||||||||||||||  ||||||||||||||||||||||||||        ||||||||||    
T  38283104 acatcaaattgtttgctcgtgatcgcttg-tggggtgaaagagggtgaaactcagtgacaatgaataaaattagggttttaagaaaatttatataaaagg 38283006  T
Q  114 gcaattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  38283005 gcaattttggtattataaaaaacttttaagaaaatttgggtgtaaccagacaaacatggggtgtaaatagaaaaa 38282931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 21278441 - 21278268
Alignment:
Q  16 acatcaaattgtttgatcg--atcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagg 113  Q
    ||||||||||||||| |||  |||||||  |||||| |||||||||||||||||  ||||||||||||||||||||||||||        ||||||||||    
T  21278441 acatcaaattgtttgctcgtgatcgcttg-tggggtgaaagagggtgaaactcagtgacaatgaataaaattagggttttaagaaaatttatataaaagg 21278343  T
Q  114 gcaattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||||| |||||        ||||||||||||| |||||||||       |||| ||||||||||||||||    
T  21278342 gcaattttggtattataaaaaaattttaagaaaatttaggtgtaaccagaaaaacatggggtgtaaatagaaaaa 21278268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 188
Target Start/End: Original strand, 25877481 - 25877624
Alignment:
Q  45 ggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggcaattttggaattatnnnnnnnntttaaga 144  Q
    ||||| |||||||||||||||||  ||||||||||||||||||||||||||        |||||||||| ||||||||| |||||        |||||||    
T  25877481 ggggtgaaagagggtgaaactcagtgacaatgaataaaattagggttttaagaaaatttatataaaaggacaattttggtattataaaaaacttttaaga 25877580  T
Q  145 aaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    ||||||||||||||||       |||||||||||||||||||||    
T  25877581 aaatttgggtgtaaccagaaaaacatgaggtgtaaatagaaaaa 25877624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 160
Target Start/End: Complemental strand, 47778914 - 47778798
Alignment:
Q  44 tggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggcaattttggaattatnnnnnnnntttaag 143  Q
    |||||| |||||||||||||||||  ||||||||||||||||||||||||||        |||||||||  ||||||||| |||||        ||||||    
T  47778914 tggggtgaaagagggtgaaactcagtgacaatgaataaaattagggttttaagaaaatttatataaaagtacaattttggtattataaaaaacttttaag 47778815  T
Q  144 aaaatttgggtgtaacc 160  Q
    |||||||||||||||||    
T  47778814 aaaatttgggtgtaacc 47778798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 11588748 - 11588920
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  11588748 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 11588847  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  11588848 aattttggtattataaaaaacttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 11588920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 34918084 - 34918256
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        |||||||||| |    
T  34918084 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaaggac 34918183  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  34918184 aattttggtattataaaaaaattttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 34918256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 37578871 - 37579043
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||| |||||||        ||||||||||||    
T  37578871 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagagttttaagaaaatttatataaaagggc 37578970  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  37578971 aattttggtattataaaaaacttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 37579043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 43663777 - 43663605
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||        ||||||||| ||    
T  43663777 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcaccgacaatgaataaaattagggttttaagaaaatttatataaaagagc 43663678  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||  |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  43663677 aattttgatattataaaaaaattttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 43663605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 24822160 - 24822016
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||    
T  24822160 acatcaaattgtttgatcgatcgctttgtggggcgaaagagggtgaaactcaccgacaatgaataaaattagggttttaagaaaatttatataaaagggc 24822061  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||||  |||||        |||||||||||||||||||||||    
T  24822060 aattttgatattataaattttttttaagaaaatttgggtgtaacc 24822016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 39365930 - 39366074
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  39365930 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 39366029  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||| | |||||        |||||||||||||||||||||||    
T  39366030 aattttagtattataaaaaaattttaagaaaatttgggtgtaacc 39366074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 15840441 - 15840613
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||  ||    
T  15840441 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaaaagc 15840540  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  15840541 aattttggtattataaaaaacttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 15840613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 17602294 - 17602467
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatgggg-taaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaaggg 114  Q
    ||||||||||||||||||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||    
T  17602294 acatcaaattgtttgatcgatcgctttgtgggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaaggg 17602393  T
Q  115 caattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    ||||||| | |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  17602394 caattttagtattataaaaaacttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 17602467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 26290205 - 26290033
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  26290205 acatcagattgtttgatcgatctctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 26290106  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||         ||||||||||||||||||||||       |||| ||||||||||||||||    
T  26290105 aattttggtattataaaaaaaaattaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 26290033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 26303462 - 26303290
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  26303462 acatcagattgtttgatcgatctctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 26303363  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||         ||||||||||||||||||||||       |||| ||||||||||||||||    
T  26303362 aattttggtattataaaaaaaaattaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 26303290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 26315456 - 26315284
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  26315456 acatcagattgtttgatcgatctctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 26315357  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||         ||||||||||||||||||||||       |||| ||||||||||||||||    
T  26315356 aattttggtattataaaaaaaaattaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 26315284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 16633971 - 16633891
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaa 96  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  16633971 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaaa 16633891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 5599319 - 5599240
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  5599319 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaa 5599240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 5635956 - 5636035
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  5635956 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaa 5636035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 26122037 - 26121958
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  26122037 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaa 26121958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 3032370 - 3032198
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||| |||||||        ||||||||||||    
T  3032370 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagagttttaagaaaatttatataaaagggc 3032271  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    | |||||| |||||         |||||||||||||||| |||||       |||| ||||||||||||||||    
T  3032270 agttttggtattataaaaaaaaattaagaaaatttgggtataaccagaaaaacatggggtgtaaatagaaaaa 3032198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 8376867 - 8376973
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||| | ||||||||||||||||||||||||||        ||||||||||||    
T  8376867 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcgctgacaatgaataaaattagggttttaagaaaatttatataaaagggc 8376966  T
Q  116 aattttg 122  Q
    |||||||    
T  8376967 aattttg 8376973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 34564488 - 34564383
Alignment:
Q  18 atcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggcaa 117  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||        ||||||||||||||    
T  34564488 atcaaattgtttgatcgatccctttatggggtgaaagagggtgaaactcattgacaatgaataaaattagggttttaagaaaatttatataaaagggcaa 34564389  T
Q  118 ttttgg 123  Q
    ||||||    
T  34564388 ttttgg 34564383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 35605987 - 35606100
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||| ||||||||        |||||||||||     
T  35605987 acatcaaattgtttgatcgatcgctttatggggtgaaagagggtgaaattcactgacaatgaataaaattaaggttttaagaaaatttatataaaagggg 35606086  T
Q  116 aattttggaattat 129  Q
    |||||||| |||||    
T  35606087 aattttggtattat 35606100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 42512831 - 42512910
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    ||||||||||||||||||||||||||| |||||| ||| |||||||||||||| |||||||||||||||||| |||||||    
T  42512831 acatcaaattgtttgatcgatcgctttgtggggtgaaatagggtgaaactcactgacaatgaataaaattagagttttaa 42512910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 23356714 - 23356615
Alignment:
Q  30 gatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggcaattttggaattat 129  Q
    ||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||| ||||||||        |||||||||||||||||||| |||||    
T  23356714 gatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattaaggttttaagaaaatttatataaaagggcaattttggtattat 23356615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 3136670 - 3136525
Alignment:
Q  16 acatcaaattgtttgatc--gatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagg 113  Q
    ||||||||||||||| ||  ||||||||  |||||| |||||||||||||||||  ||||||||||||||||||||||||||        ||||||||||    
T  3136670 acatcaaattgtttgctcatgatcgcttg-tggggtgaaagagggtgaaactcagtgacaatgaataaaattagggttttaagaaaatttatataaaagg 3136572  T
Q  114 gcaattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||||||  |||||        |||||||||||||||||||||||    
T  3136571 gcaattttgatattataaaaaacttttaagaaaatttgggtgtaacc 3136525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 188
Target Start/End: Complemental strand, 26294550 - 26294413
Alignment:
Q  51 aaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggcaattttggaattatnnnnnnnntttaagaaaattt 150  Q
    ||||| |||||||||||  ||||||||||||||||||||||||||        |||||||||||||||||||| |||||        |||||||||||||    
T  26294550 aaagatggtgaaactcagtgacaatgaataaaattagggttttaagaaaatttatataaaagggcaattttggtattataaaaaaaatttaagaaaattt 26294451  T
Q  151 gggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    ||||||||||       |||| ||||||||||||||||    
T  26294450 gggtgtaaccagaaaaacatggggtgtaaatagaaaaa 26294413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 188
Target Start/End: Complemental strand, 26307807 - 26307670
Alignment:
Q  51 aaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggcaattttggaattatnnnnnnnntttaagaaaattt 150  Q
    ||||| |||||||||||  ||||||||||||||||||||||||||        |||||||||||||||||||| |||||        |||||||||||||    
T  26307807 aaagatggtgaaactcagtgacaatgaataaaattagggttttaagaaaatttatataaaagggcaattttggtattataaaaaaaatttaagaaaattt 26307708  T
Q  151 gggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    ||||||||||       |||| ||||||||||||||||    
T  26307707 gggtgtaaccagaaaaacatggggtgtaaatagaaaaa 26307670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 188
Target Start/End: Complemental strand, 12713535 - 12713392
Alignment:
Q  45 ggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggcaattttggaattatnnnnnnnntttaaga 144  Q
    ||||| |||||||||||||||||  ||||||||||||||||||||||||||        |||||||||| ||||||||  |||||        |||||||    
T  12713535 ggggtgaaagagggtgaaactcagtgacaatgaataaaattagggttttaagaaaatttatataaaaggacaattttgatattataaaaaacttttaaga 12713436  T
Q  145 aaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    ||||||||||||||||       |||| ||||||||||||||||    
T  12713435 aaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 12713392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 5988797 - 5988877
Alignment:
Q  16 acatcaaattgtttgatcg--atcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    ||||||||||||||| |||  |||||||  |||||| |||||||||||||||||  ||||||||||||||||||||||||||    
T  5988797 acatcaaattgtttgctcgtgatcgcttg-tggggtgaaagagggtgaaactcaatgacaatgaataaaattagggttttaa 5988877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 6469141 - 6468969
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  6469141 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 6469042  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  6469041 aattttggtattataaaaaacttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 6468969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 25085649 - 25085792
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||| |||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||       ||||||||||||    
T  25085649 acatcaaattgtttaatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaaaaaaaattatataaaagggc 25085748  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaac 159  Q
    ||||||||||||||        ||||| ||||||||||||||||    
T  25085749 aattttggaattataaaaaacttttaaaaaaatttgggtgtaac 25085792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 25143621 - 25143734
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||| |||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||       ||||||||||||    
T  25143621 acatcaaattgtttaatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaaaaaaaattatataaaagggc 25143720  T
Q  116 aattttggaattat 129  Q
    ||||||||||||||    
T  25143721 aattttggaattat 25143734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 33281499 - 33281643
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||| ||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  33281499 acatcaaattgtttgatctatcgctttatgggatgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 33281598  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||||  |||||        |||||||||||||||||||||||    
T  33281599 aattttgatattataatttttttttaagaaaatttgggtgtaacc 33281643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 31510881 - 31510738
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||        ||||||||||||    
T  31510881 acatcaaattgtttgatcgatcgctttatggggtgaaagagggtgaaactcactgacaatgaataaaattagagttttaagaaaatttatataaaagggc 31510782  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||||  |||||        |||||||||||||||||||||||    
T  31510781 aattttgatattat-aaaaaaatttaagaaaatttgggtgtaacc 31510738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 37866522 - 37866694
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||| ||||||||||| |||||||||||||||||||||||||||       ||||||||||||    
T  37866522 acatcaaattgtttgatcgatcgctttgtggggtgaaagagagtgaaactcactgacaatgaataaaattagggttttaaaaaaaattatataaaagggc 37866621  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||  |||||         |||||||||||||| |||||||       |||| ||||||||||||||||    
T  37866622 aattttgatattataaaaaaaaattaagaaaatttggatgtaaccagaaaaacatggggtgtaaatagaaaaa 37866694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 38759832 - 38759660
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||  ||||||||||||||||||||||||||        ||||||||||||    
T  38759832 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcattgacaatgaataaaattagggttttaagaaaatttatataaaagggc 38759733  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        ||||||||||||| ||||||| |       |||| ||||||||||||||||    
T  38759732 aattttggtattataaaaaacttttaagaaaatttaggtgtaatcagaaaaacatggggtgtaaatagaaaaa 38759660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 43293121 - 43292978
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  43293121 acatcaaattgtttgatcgatcgctttatggggggaaagaaggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 43293022  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaac 159  Q
    |||||||  |||||        ||||||||||||||||||||||    
T  43293021 aattttgatattataaattttttttaagaaaatttgggtgtaac 43292978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 4155582 - 4155469
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        |||||||||| |    
T  4155582 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaaggac 4155483  T
Q  116 aattttggaattat 129  Q
    |||||||| |||||    
T  4155482 aattttggtattat 4155469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 9066330 - 9066500
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||        ||||||||||||    
T  9066330 acatcaaattatttgatcgatcgctttgtggggtaaaagagggtgaaactcactgacaatgaataaaattagggttctaagaaaatttatataaaagggc 9066429  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaa 187  Q
    |||||| | |||||        |||||||||||||||||||||||       |||| |||||||||||||||    
T  9066430 aatttttgtattat-aaaaaaatttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaa 9066500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 29921089 - 29921202
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| | ||||||||||||||||||||||||        |||||||||| |    
T  29921089 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactggcaatgaataaaattagggttttaagaaaatttatataaaaggac 29921188  T
Q  116 aattttggaattat 129  Q
    |||||||| |||||    
T  29921189 aattttggtattat 29921202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 13145328 - 13145250
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggtttta 94  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||| ||||    
T  13145328 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggcttta 13145250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 19034159 - 19034040
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcac------cgacaatgaataaaattagggttttaaannnnnnnatataa 109  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||       |||||||||||||||||||||||||||       ||||||    
T  19034159 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactaacaatgacaatgaataaaattagggttttaaaaaaatttatataa 19034060  T
Q  110 aagggcaattttggaattat 129  Q
    ||| |||||||||| |||||    
T  19034059 aagagcaattttggtattat 19034040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 19617041 - 19616878
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||| |     |||||| ||||||||||||||||||    |||||||||||||||||||||||        ||||||||||||    
T  19617041 acatcaaattgtttgatcgattg-----tggggtgaaagagggtgaaactcac----aatgaataaaattagggttttaagaaaatttatataaaagggc 19616951  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  19616950 aattttggtattataaaaaacttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 19616878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 160
Target Start/End: Complemental strand, 43517702 - 43517586
Alignment:
Q  44 tggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggcaattttggaattatnnnnnnnntttaag 143  Q
    |||||| |||||||||||||||||  ||||||||||||||||||||||||||        |||||||||| ||||||||| |||||        ||||||    
T  43517702 tggggtgaaagagggtgaaactcagtgacaatgaataaaattagggttttaagaaaatttatataaaaggacaattttggtattataaaaaacttttaag 43517603  T
Q  144 aaaatttgggtgtaacc 160  Q
    |||||||||||||||||    
T  43517602 aaaatttgggtgtaacc 43517586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 159
Target Start/End: Original strand, 24559771 - 24559874
Alignment:
Q  56 gggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggcaattttggaattatnnnnnnnntttaagaaaatttgggtg 155  Q
    |||||||||||||  |||||||||||||||||||||||||        |||||| ||| ||||||||| |||||        ||||||||||||||||||    
T  24559771 gggtgaaactcacttacaatgaataaaattagggttttaagaaaatttatataataggacaattttggtattataaaaaaaatttaagaaaatttgggtg 24559870  T
Q  156 taac 159  Q
    ||||    
T  24559871 taac 24559874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 24600804 - 24600843
Alignment:
Q  56 gggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    |||||||||||||  |||||||||||||||||||||||||    
T  24600804 gggtgaaactcacttacaatgaataaaattagggttttaa 24600843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 35896402 - 35896574
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  35896402 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 35896501  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  35896502 aattttggtattataaaaaacttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 35896574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 37094710 - 37094854
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||        ||||||||||||    
T  37094710 acatcaaattgtttgatcgatcgctttgtggggtaaaagagggtgaaactcactgacaatgaataaaattaaggttttaagaaaatttatataaaagggc 37094809  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||||| |||||        |||||||||||||||||||||||    
T  37094810 aattttggtattataaaacaaatttaagaaaatttgggtgtaacc 37094854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 25852825 - 25852653
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  25852825 acatcaaattgtttgatcgatcgctttgtggggtgaaagagagtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 25852726  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  25852725 aattttggtattataaaaaaaatttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 25852653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 32551050 - 32550906
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        |||||||| |||    
T  32551050 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaaaggc 32550951  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||||| |||||        |||||||||||||||||||||||    
T  32550950 aattttggtattataaaaaacttttaagaaaatttgggtgtaacc 32550906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 42343608 - 42343778
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  42343608 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaaatgatataaaagggc 42343707  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||         ||||||||||||||||||||||       ||| |||||||||||||||||    
T  42343708 aattttggtattataaaaaaa--ttaagaaaatttgggtgtaaccagaaaaacataaggtgtaaatagaaaaa 42343778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 2390106 - 2389935
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  2390106 acatcaaattgtttgatcgatcgctttgtgtggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaaattatataaaagggc 2390007  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  2390006 aattttggtattat-aaaaaaatttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 2389935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 21658567 - 21658738
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  21658567 acatcaaattgtttgatcgatcgctttgtgtggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaaattatataaaagggc 21658666  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  21658667 aattttggtattat-aaaaaaatttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 21658738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 43577579 - 43577692
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  43577579 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 43577678  T
Q  116 aattttggaattat 129  Q
    |||||||| |||||    
T  43577679 aattttggtattat 43577692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 927645 - 927816
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||        ||||||||||||    
T  927645 acatcaaattgtttgatagatcgctttgtggggtaaaagagggtgaaactcattgacaatgaataaaattagggttttaagaaaatttatataaaagggc 927744  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||         ||||||||||||||||||||||       |||| ||||||||||||||||    
T  927745 aattttggtattataaaaaaaa-ttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 927816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 3178887 - 3179000
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||| ||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  3178887 acatcaaattgtttgatcgatcgttttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 3178986  T
Q  116 aattttggaattat 129  Q
    |||||||| |||||    
T  3178987 aattttggtattat 3179000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 13195626 - 13195513
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||     
T  13195626 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaaggga 13195527  T
Q  116 aattttggaattat 129  Q
    |||||||| |||||    
T  13195526 aattttggtattat 13195513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 1520865 - 1521009
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||| |||||||||||||| |||||| ||||||||||||||||||  |||||||||||||||||||||||||        |||||||||| |    
T  1520865 acatcaaattgtatgatcgatcgctttgtggggtgaaagagggtgaaactcactaacaatgaataaaattagggttttaagaaaatttatataaaaggac 1520964  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||||| |||||        |||||||||||||||||||||||    
T  1520965 aattttggtattataaaaaaaatttaagaaaatttgggtgtaacc 1521009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 39697251 - 39697079
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||| ||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||        |||||||| | |    
T  39697251 acatcaaattgtttgattgatcgctttgtggggtgaaagagggtaaaactcaccgacaatgaataaaattagggttttaagaaaatttatataaaatgac 39697152  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        ||||||||||||||| |||||||        ||||||||||||||||||||    
T  39697151 aattttggtattataaaaaaaatttaagaaaatttggatgtaaccagaaaaatatgaggtgtaaatagaaaaa 39697079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 40811161 - 40811048
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||| |||||||||| ||||||||        ||||||||||||    
T  40811161 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaataaataaaattatggttttaagaaaatttatataaaagggc 40811062  T
Q  116 aattttggaattat 129  Q
    |||||||| |||||    
T  40811061 aattttggtattat 40811048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 44144056 - 44144169
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||||||||| || |||||| |||||||||||||||||  ||||||||||||||||||||||||||        ||||||||||||    
T  44144056 acatcaaattgtttgatcgatcgccttgtggggtgaaagagggtgaaactcattgacaatgaataaaattagggttttaagaaaatttatataaaagggc 44144155  T
Q  116 aattttggaattat 129  Q
    |||||||| |||||    
T  44144156 aattttggtattat 44144169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 1482513 - 1482592
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||| |||| ||||||||||||||||||||||||||    
T  1482513 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaattcactgacaatgaataaaattagggttttaa 1482592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 34202951 - 34203030
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    ||||||||||||||||||||||||||| |||| | |||||||||||||||||| ||||||||||||||||||||||||||    
T  34202951 acatcaaattgtttgatcgatcgctttgtgggatgaaagagggtgaaactcactgacaatgaataaaattagggttttaa 34203030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 27980377 - 27980312
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataa 81  Q
    |||||||||||||||||| |||||||| |||| | |||||||||||||||||| || |||||||||    
T  27980377 acatcaaattgtttgatccatcgctttgtgggatgaaagagggtgaaactcactgagaatgaataa 27980312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 28066907 - 28066842
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataa 81  Q
    |||||||||||||||||| |||||||| |||| | |||||||||||||||||| || |||||||||    
T  28066907 acatcaaattgtttgatccatcgctttgtgggatgaaagagggtgaaactcactgagaatgaataa 28066842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 10639383 - 10639496
Alignment:
Q  16 acatcaaattgtttgatcg--atcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagg 113  Q
    |||||||||||||||||||  |||||||  |||||| || ||||||||||||||  ||||||||||||||||||||||||||        ||||||||||    
T  10639383 acatcaaattgtttgatcgtgatcgcttg-tggggtgaa-gagggtgaaactcagtgacaatgaataaaattagggttttaagaaaatttatataaaagg 10639480  T
Q  114 gcaattttggaattat 129  Q
     ||||||||| |||||    
T  10639481 acaattttggtattat 10639496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 2482098 - 2481926
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  2482098 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 2481999  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  2481998 aattttggtattataaaaaaaatttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 2481926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 44722552 - 44722696
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||       ||||||||||||    
T  44722552 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaaaaaaatttatataaaagggc 44722651  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||||  |||||        |||||||||||||||||||||||    
T  44722652 aattttgatattataaaaaaaatttaagaaaatttgggtgtaacc 44722696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 34270209 - 34270037
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  34270209 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 34270110  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        ||||||||||||||| |||||||       |||| ||||||||||||||||    
T  34270109 aattttggtattataaaaaaaatttaagaaaatttggatgtaaccagaaaaacatggggtgtaaatagaaaaa 34270037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 34276444 - 34276272
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  34276444 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 34276345  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        ||||||||||||||| |||||||       |||| ||||||||||||||||    
T  34276344 aattttggtattataaaaaaaatttaagaaaatttggatgtaaccagaaaaacatggggtgtaaatagaaaaa 34276272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 40536094 - 40535923
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||  ||||||||||||||||||||||||||        ||||||||||||    
T  40536094 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcattgacaatgaataaaattagggttttaagaaaatttatataaaagggc 40535995  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaa 187  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| |||||||||||||||    
T  40535994 aattttggtattataaaaaacttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaa 40535923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 2137807 - 2137663
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        |||||||||| |    
T  2137807 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaaggac 2137708  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||||| |||||        |||||||||||||||||||||||    
T  2137707 aattttggtattataatttttttttaagaaaatttgggtgtaacc 2137663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 11172791 - 11172647
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  11172791 acatcaaattgtttgatcgatcgctttgaggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 11172692  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||||| |||||        |||||||||||||||||||||||    
T  11172691 aattttggtattataaaaaacttttaagaaaatttgggtgtaacc 11172647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 23 - 188
Target Start/End: Original strand, 15941497 - 15941662
Alignment:
Q  23 attgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggcaattttg 122  Q
    |||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||    
T  15941497 attgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggcaattttg 15941596  T
Q  123 gaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    | |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  15941597 gtattataaaaaaattttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 15941662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 24317826 - 24317997
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  24317826 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 24317925  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||         ||||||||||||||||||||||       |||| ||||||||||||||||    
T  24317926 aattttggtattataaaaaaaa-ttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 24317997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 39568823 - 39568652
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        |||||||| |||    
T  39568823 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaaaggc 39568724  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  39568723 aattttggtattat-aattttttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 39568652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 39983017 - 39983130
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  39983017 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 39983116  T
Q  116 aattttggaattat 129  Q
    |||||||| |||||    
T  39983117 aattttggtattat 39983130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 28852275 - 28852103
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||| |||||||| |||||| ||||||| |||||||||| ||||||||||||||||||||||||||        || |||||||||    
T  28852275 acatcaaattgtttgatcaatcgctttgtggggtgaaagaggttgaaactcactgacaatgaataaaattagggttttaagaaaatttatgtaaaagggc 28852176  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  28852175 aattttggtattataatttttttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 28852103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 52043841 - 52043698
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||        ||||||||||||    
T  52043841 acatcaaattatttgatcgatcgctttgtggggtaaaagagggtgaaactcactgacaatgaataaaattagggttctaagaaaatttatataaaagggc 52043742  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||||| |||||        |||||||||||||||||||||||    
T  52043741 aattttggtattat-aaaaaaatttaagaaaatttgggtgtaacc 52043698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 20582240 - 20582414
Alignment:
Q  13 tggacatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaag 112  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||| | |||||||||||||||| ||       |||||||||    
T  20582240 tggacatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaacgtataaaattagggtttt-aagaaatttatataaaag 20582338  T
Q  113 ggcaattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    | ||||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  20582339 gacaattttggtattataaaaaacttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 20582414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 50728502 - 50728582
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaa 96  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  50728502 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaaa 50728582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 26163967 - 26163888
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  26163967 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaa 26163888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 33010150 - 33010010
Alignment:
Q  20 caaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggcaatt 119  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| |||| ||||||||||||||||||||||||||        || |||||||||||||    
T  33010150 caaattgtttgatcgatcgctttgtggggtgaaagagggtgaaattcactgacaatgaataaaattagggttttaagaaaatttatgtaaaagggcaatt 33010051  T
Q  120 ttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||| |||||        |||||||||||||||||||||||    
T  33010050 ttggtattataaaaaaaatttaagaaaatttgggtgtaacc 33010010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 49823846 - 49823990
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||| ||||||||||||||||||||        |||||||| |||    
T  49823846 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaacgaataaaattagggttttaagaaaatttatataaaaaggc 49823945  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||||| |||||        ||||||||||||||||| |||||    
T  49823946 aattttggtattataaaaaaaatttaagaaaatttgggtataacc 49823990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 6653756 - 6653927
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| | |||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  6653756 acatcaaattgtttgatcgatcgctttgtggggtgacagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 6653855  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||| | |||||         ||||||||||||||||||||||       |||| ||||||||||||||||    
T  6653856 aattttagtattataaaaaaaa-ttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 6653927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 42948837 - 42949009
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||| ||| |||||| |||||||||||||||||| ||||||||||||||||||| ||| ||        ||||||||||||    
T  42948837 acatcaaattgtttgatcgatcgttttgtggggtgaaagagggtgaaactcactgacaatgaataaaattaggatttaaagaaaatttatataaaagggc 42948936  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||         ||||||||||||||||||||||       |||| ||||||||||||||||    
T  42948937 aattttggtattataaaaaaaaattaagaaaatttgggtgtaaccaaaaaaacatggggtgtaaatagaaaaa 42949009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 51676660 - 51676555
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||        ||||||||||||    
T  51676660 acatcaaattgtttgatcgatcgctttatggggtgaaagagggtgaaactcactgacaatgaataaaatta-ggttttaagaaaatttatataaaagggc 51676562  T
Q  116 aattttg 122  Q
    |||||||    
T  51676561 aattttg 51676555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 14246687 - 14246574
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| ||||||| |||||||||| | ||||||||||||||||||||||||        ||||||||||||    
T  14246687 acatcaaattgtttgatcgatcgctttgtggggtgaaagaggatgaaactcactggcaatgaataaaattagggttttaagaaaatttatataaaagggc 14246588  T
Q  116 aattttggaattat 129  Q
    |||||||| |||||    
T  14246587 aattttggtattat 14246574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 52025297 - 52025410
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||| |||||||| ||| || |||||||||||||||||| |||||| |||||||||||||||||||        ||||||||||||    
T  52025297 acatcaaattgtttgatcaatcgctttgtggagtgaaagagggtgaaactcactgacaataaataaaattagggttttaagaaaatttatataaaagggc 52025396  T
Q  116 aattttggaattat 129  Q
    |||||||| |||||    
T  52025397 aattttggtattat 52025410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 18909821 - 18909900
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||| | ||||||    
T  18909821 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattaagattttaa 18909900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 40400671 - 40400844
Alignment:
Q  16 acatcaaattgtttgatcg--atcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagg 113  Q
    ||||||||||||||| |||  |||||||  |||||| |||||||||||||||||  ||||||||||||||||||||||||||        ||||||||||    
T  40400671 acatcaaattgtttgctcgtgatcgcttg-tggggtgaaagagggtgaaactcagtgacaatgaataaaattagggttttaagaaaatttatataaaagg 40400769  T
Q  114 gcaattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  40400770 gcaattttggtattataaaaaacttttaagaaaatttgggtgtaaccaaaaaaacatggggtgtaaatagaaaaa 40400844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 188
Target Start/End: Complemental strand, 13234730 - 13234595
Alignment:
Q  53 agagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggcaattttggaattatnnnnnnnntttaagaaaatttgg 152  Q
    |||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||| |||||        |||||||||||||||    
T  13234730 agagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggcaattttggtattataaaaaacttttaagaaaatttgg 13234631  T
Q  153 gtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    ||||||||       |||| ||||||||||||||||    
T  13234630 gtgtaaccagaaaaacatggggtgtaaatagaaaaa 13234595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 7141860 - 7142032
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||     
T  7141860 acatcaaattgtttgatcgatcgctttatggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatatatataaaagggt 7141959  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||  |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  7141960 aattttgatattataaattttttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 7142032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 18894391 - 18894563
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||        ||||||||||||    
T  18894391 acatcaaattgtttgatcgatcgctttatggggtgaaagagggtgaaactcactgacaatgaataaaattaggattttaagaaaatttatataaaagggc 18894490  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||  |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  18894491 aattttgatattataaaatttttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 18894563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 25332325 - 25332153
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  25332325 acatcaaattgtttgatagatcgctttgtggggtaaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 25332226  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    ||||||   |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  25332225 aatttttttattataaatattttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 25332153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 6625980 - 6626124
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||| ||||||||        ||||||||||||    
T  6625980 acatcaaattgtttgatcgatcgctttatggagtgaaagagggtgaaactcactgacaatgaataaaattaaggttttaagaaaatttatataaaagggc 6626079  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||||  |||||        |||||||||||||||||||||||    
T  6626080 aattttgatattataaaaaaaatttaagaaaatttgggtgtaacc 6626124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 6167423 - 6167252
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||| |||||||||||        ||||||||||||    
T  6167423 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaactagggttttaagaaaatttatataaaagggc 6167324  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||| | |||||         ||||||||||||||||||||||       |||| ||||||||||||||||    
T  6167323 aatttttgtattataaaaaaaa-ttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 6167252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 159
Target Start/End: Complemental strand, 13889482 - 13889339
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatgggg-taaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaaggg 114  Q
    ||||||||||||||||||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||||| ||||||        |||||||||||    
T  13889482 acatcaaattgtttgatcgatcgctttgtgggggtgaaagagggtgaaactcactgacaatgaataaaattaggattttaagaaaatttatataaaaggg 13889383  T
Q  115 caattttggaattatnnnnnnnntttaagaaaatttgggtgtaac 159  Q
    ||||||||| |||||        ||||||||||||||||||||||    
T  13889382 caattttggtattat-aaaaaaatttaagaaaatttgggtgtaac 13889339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 29121796 - 29121690
Alignment:
Q  23 attgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggcaattttg 122  Q
    |||| ||||||||||||||| |||| | ||||| | |||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||    
T  29121796 attgattgatcgatcgctttgtgggatgaaagatgatgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggcaattttg 29121697  T
Q  123 gaattat 129  Q
    | |||||    
T  29121696 gtattat 29121690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 160
Target Start/End: Original strand, 25331634 - 25331743
Alignment:
Q  51 aaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggcaattttggaattatnnnnnnnntttaagaaaattt 150  Q
    |||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||  |||||        |||||||||||||    
T  25331634 aaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggcaattttgatattataaattttttttaagaaaattt 25331733  T
Q  151 gggtgtaacc 160  Q
    || |||||||    
T  25331734 ggatgtaacc 25331743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 3095193 - 3095273
Alignment:
Q  16 acatcaaattgtttgatcg--atcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    |||||||||||||||||||  |||||||  |||||| |||||||||||||||||  ||||||||||||||||||| ||||||    
T  3095193 acatcaaattgtttgatcgtgatcgcttg-tggggtgaaagagggtgaaactcagtgacaatgaataaaattaggattttaa 3095273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 29629938 - 29629858
Alignment:
Q  16 acatcaaattgtttgatcg--atcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    ||||||||||||||| |||  |||||||  |||||| |||||||||||||||||  ||||||||||||||||||||||||||    
T  29629938 acatcaaattgtttgttcgtgatcgcttg-tggggtgaaagagggtgaaactcagtgacaatgaataaaattagggttttaa 29629858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 19873528 - 19873356
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  19873528 acatcaaattgtttgatcaatcgctttgtggggtaaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 19873429  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||| ||||       |||| ||||||||||||||||    
T  19873428 aattttggtattataatttttttttaagaaaatttgggtgcaaccagaaaaacatggggtgtaaatagaaaaa 19873356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 20434759 - 20434931
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  20434759 acatcaaattgtttgatcaatcgctttgtggggtaaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 20434858  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        || ||||||||||||||||||||       |||| ||||||||||||||||    
T  20434859 aattttggtattataattttttttaaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 20434931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 28405887 - 28405715
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||| |||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||       ||||||||||||    
T  28405887 acatcaaattgtttgatccatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaaatttttatatataaaagggc 28405788  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        ||||||||||||||| |||||||       |||| ||||||||||||||||    
T  28405787 aattttggtattataaaaaaattttaagaaaatttggatgtaaccagaaaaacatggggtgtaaatagaaaaa 28405715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 43829695 - 43829524
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  43829695 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 43829596  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  43829595 aattttggtattat-aaaaaaatttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 43829524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 42349347 - 42349491
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        |||||||||| |    
T  42349347 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaaggac 42349446  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||||| |||||        |||||||||||||||||||||||    
T  42349447 aattttggtattataaattttttttaagaaaatttgggtgtaacc 42349491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 42723582 - 42723410
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||| |||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        || |||||||||    
T  42723582 acatcaaattgtttgatcaatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatgtaaaagggc 42723483  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  42723482 aattttggtattataatttttttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 42723410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 52912601 - 52912429
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  52912601 acatcaaattgtttgatcgatcgctttatggggtgaaagagggcgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 52912502  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||  |||||        || ||||||||||||||||||||       |||| ||||||||||||||||    
T  52912501 aattttgatattataaatttttttaaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 52912429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 55215044 - 55214872
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||  |||||||||||||||||||||||||        ||||||||||||    
T  55215044 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactcacaatgaataaaattagggttttaagaaaatttatataaaagggc 55214945  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||         ||||||||||||||||||||||       |||| ||||||||||||||||    
T  55214944 aattttggtattataaaaaaaaattaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 55214872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 55220514 - 55220686
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||||||||||  |||||||||||||||||||||||||        ||||||||||||    
T  55220514 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactcacaatgaataaaattagggttttaagaaaatttatataaaagggc 55220613  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||         ||||||||||||||||||||||       |||| ||||||||||||||||    
T  55220614 aattttggtattataaaaaaaaattaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 55220686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 56363350 - 56363522
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||| ||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  56363350 acatcaaattgtttgatcgattgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 56363449  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        ||||||||||||||||||||| |       |||| ||||||||||||||||    
T  56363450 aattttggtattataaaaagtttttaagaaaatttgggtgtaatcagaaaaacatggggtgtaaatagaaaaa 56363522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 20738394 - 20738565
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  20738394 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 20738493  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        ||||| |||||||||||||||||       |||| ||||||||||||||||    
T  20738494 aattttggtattat-aaaaacttttaaaaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 20738565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 56017889 - 56017717
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| | ||||||||||||||| ||||||||        ||||||||||||    
T  56017889 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactggcaatgaataaaattaaggttttaagaaaatttatataaaagggc 56017790  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        ||||||||||||||| |||||||       |||| ||||||||||||||||    
T  56017789 aattttggtattataaaaaacttttaagaaaatttggatgtaaccagaaaaacatggggtgtaaatagaaaaa 56017717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 38291333 - 38291228
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  38291333 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 38291234  T
Q  116 aatttt 121  Q
    ||||||    
T  38291233 aatttt 38291228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 23894636 - 23894557
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||    
T  23894636 acatcaaattgtttgatcgatcgctttatggggtgaaagagggtgaaactcactgacaatgaataaaattaaggttttaa 23894557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 46563924 - 46563781
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  46563924 acatcaaattgtttgatcgatcgctttgtgaggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 46563825  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||||  |||||        |||||||||||||||||||||||    
T  46563824 aattttgatattat-aaaaaaatttaagaaaatttgggtgtaacc 46563781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 37233614 - 37233441
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatgggg-taaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaaggg 114  Q
    ||||||||||||||||||||||||||| ||||| | ||||||||| |||||||| ||||||||||||||||||||||||||        ||||||||||     
T  37233614 acatcaaattgtttgatcgatcgctttgtgggggtgaaagagggtaaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagga 37233515  T
Q  115 caattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    ||||||||| |||||        ||||||||||||| |||||||||       |||| ||||||||||||||||    
T  37233514 caattttggtattataaaaaaattttaagaaaatttaggtgtaaccagaaaaacatggggtgtaaatagaaaaa 37233441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 39539908 - 39539829
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    ||||||||||||||||||||||||||| ||| || |||||||||||||||||| ||||||||||||||||||||||||||    
T  39539908 acatcaaattgtttgatcgatcgctttgtggagtgaaagagggtgaaactcactgacaatgaataaaattagggttttaa 39539829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 55182968 - 55182796
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||| ||| |||||| |||||||||||||||||| ||||||||||||||||||| ||||||        ||||||||||||    
T  55182968 acatcaaattgtttgatcgatcgttttgtggggtgaaagagggtgaaactcactgacaatgaataaaattaggattttaagaaaatttatataaaagggc 55182869  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    ||||||   |||||        ||||||||||||||| |||||||       |||| ||||||||||||||||    
T  55182868 aattttaatattataaaaaaaatttaagaaaatttggatgtaaccaaaaaaacatggggtgtaaatagaaaaa 55182796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 614474 - 614590
Alignment:
Q  16 acatcaaattgtttg---atcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaag 112  Q
    |||||||||||||||   |||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        |||||||||    
T  614474 acatcaaattgtttgttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaag 614573  T
Q  113 ggcaattttggaattat 129  Q
    ||||||||||| |||||    
T  614574 ggcaattttggtattat 614590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 53874485 - 53874379
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||  |||||||        ||||||||||||    
T  53874485 acatcaaattgtttgatcgatcgctttatggggtgaaagagggtaaaactcactgacaatgaataaaattaaagttttaagaaaatttatataaaagggc 53874386  T
Q  116 aattttg 122  Q
    |||||||    
T  53874385 aattttg 53874379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 52839163 - 52839050
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||| |||| ||| |||| | |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  52839163 acatcaaattgtttgatcaatcggtttgtgggatgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 52839064  T
Q  116 aattttggaattat 129  Q
    |||||||| |||||    
T  52839063 aattttggtattat 52839050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 1356494 - 1356321
Alignment:
Q  16 acatcaaattgtttgatcg--atcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagg 113  Q
    ||||||||||||||| |||  |||||||  |||||| |||||||||||||||||  ||||||||||||||||||||||||||        ||||||||||    
T  1356494 acatcaaattgtttgctcgtgatcgcttg-tggggtgaaagagggtgaaactcagtgacaatgaataaaattagggttttaagaaaatttatataaaagg 1356396  T
Q  114 gcaattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  1356395 gcaattttggtattataaaaaacttttaagaaaatttgggtgtaaccaaaaaaacatggggtgtaaatagaaaaa 1356321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 10541557 - 10541383
Alignment:
Q  16 acatcaaattgtttgatcg--atcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatat-aaaag 112  Q
    ||||||||||||||| |||  |||||||  |||||| |||||||||||||||||  ||||||||||||||||||||||||||        |||| |||||    
T  10541557 acatcaaattgtttgctcgtgatcgcttg-tggggtgaaagagggtgaaactcagtgacaatgaataaaattagggttttaagaaaatttatataaaaag 10541459  T
Q  113 ggcaattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    ||||||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  10541458 ggcaattttggtattataaaaaacttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 10541383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 188
Target Start/End: Original strand, 5098717 - 5098848
Alignment:
Q  57 ggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggcaattttggaattatnnnnnnnntttaagaaaatttgggtgt 156  Q
    |||||||||||| ||||||||||||||||||||||||||        ||||||||| |||||||||| ||| |        |||||||||||||||||||    
T  5098717 ggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagtgcaattttggtattttaaaatttttttaagaaaatttgggtgt 5098816  T
Q  157 aaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    ||||       |||| ||||||||||||||||    
T  5098817 aaccagaaaaacatggggtgtaaatagaaaaa 5098848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 25858309 - 25858352
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggt 59  Q
    ||||||||||||||||||||||||||| |||||| |||||||||    
T  25858309 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggt 25858352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 22781249 - 22781077
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||| ||    
T  22781249 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagagc 22781150  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  22781149 aattttggtattataaaaaaaatttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 22781077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 33967566 - 33967738
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||| |||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  33967566 acatcaaattgtttgatcaatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 33967665  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  33967666 aattttggtattataatttttttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 33967738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 37971113 - 37970941
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  37971113 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 37971014  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||         ||||||||||||||||||||||       |||| ||||||||||||||||    
T  37971013 aattttggtattataaaaaaaaattaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 37970941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 10840830 - 10840662
Alignment:
Q  20 caaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggcaatt 119  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| |||| ||||||||||||||||||||||||||        ||||||||||||||||    
T  10840830 caaattgtttgatcgatcgctttgtggggtgaaagagggtgaaattcactgacaatgaataaaattagggttttaagaaaatttatataaaagggcaatt 10840731  T
Q  120 ttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  10840730 ttggtattataaaaaaaatttaagaaaatttgggtgtaaccaaaaaaacatggggtgtaaatagaaaaa 10840662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 41070535 - 41070703
Alignment:
Q  20 caaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggcaatt 119  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| |||| ||||||||||||||||||||||||||        ||||||||||||||||    
T  41070535 caaattgtttgatcgatcgctttgtggggtgaaagagggtgaaattcactgacaatgaataaaattagggttttaagaaaatttatataaaagggcaatt 41070634  T
Q  120 ttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  41070635 ttggtattataaaaaaaatttaagaaaatttgggtgtaaccaaaaaaacatggggtgtaaatagaaaaa 41070703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 25711575 - 25711719
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        |||||||| ||     
T  25711575 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaaaggt 25711674  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||||| |||||        |||||||||||||||||||||||    
T  25711675 aattttggtattataaaaaaattttaagaaaatttgggtgtaacc 25711719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 38871772 - 38871916
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  38871772 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 38871871  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||||  |||||        ||||||||||||||| |||||||    
T  38871872 aattttgatattataaaaattttttaagaaaatttggatgtaacc 38871916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 32236947 - 32237119
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||| |||  ||||| |||||||||||||||||| |||||||||||||| |||||||||||        ||||||||||||    
T  32236947 acatcaaattgtttgatcgatcgttttgaggggtgaaagagggtgaaactcactgacaatgaataaaagtagggttttaagaaaatttatataaaagggc 32237046  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  32237047 aattttggtattataaaaaacttttaagaaaatttgggtgtaaccagacaaacatggggtgtaaatagaaaaa 32237119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 33712123 - 33711980
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||||||| |||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  33712123 acatcaaattgtttgatcgatcactttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaatatttatataaaagggc 33712024  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
    |||||||| |||||        |||||||||||||||||||||||    
T  33712023 aattttggtattat-aaaaaaatttaagaaaatttgggtgtaacc 33711980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 36430967 - 36431135
Alignment:
Q  20 caaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggcaatt 119  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| |||| ||||||||||||||||||||||||||        |||||||||| |||||    
T  36430967 caaattgtttgatcgatcgctttgtggggtgaaagagggtgaaattcactgacaatgaataaaattagggttttaagaaaatttatataaaaggacaatt 36431066  T
Q  120 ttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||| |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  36431067 ttggtattataaaaaaaatttaagaaaatttgggtgtaaccaaaaaaacatggggtgtaaatagaaaaa 36431135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 20834951 - 20834845
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  20834951 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 20834852  T
Q  116 aattttg 122  Q
    |||||||    
T  20834851 aattttg 20834845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 4515445 - 4515366
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4515445 acatcaaattgtttgatcaatcgctttgtggggtaaaagagggtgaaactcactgacaatgaataaaattagggttttaa 4515366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 4044217 - 4044045
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||||||||||||   ||||| |||||||||||||||||||       ||||||||||||    
T  4044217 acatcaaattgtttgatcgatcgttttgtggggtgaaagagggtgaaactcactaccaatggataaaattagggttttaaaaaaaattatataaaagggc 4044118  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||         ||||||||||||||||||||||       |||| ||||||||||||||||    
T  4044117 aattttggtattataaaaaaaaattaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 4044045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 24395846 - 24395989
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||||||| |||| |||||| |||||||||||||||||| | ||||||||||||||||||||||||        ||||| ||||||    
T  24395846 acatcaaattgtttgatcgatcactttgtggggtgaaagagggtgaaactcactgtcaatgaataaaattagggttttaagaaaatttatatataagggc 24395945  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaac 159  Q
    |||||||| |||||        ||||||||||||||||||||||    
T  24395946 aattttggtattataaaaaacttttaagaaaatttgggtgtaac 24395989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 20656694 - 20656522
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||||||  ||||  ||||| |||||||||||||||||| |||||||||||||| |||||||||||        |||||||||| |    
T  20656694 acatcaaattgtttgatcgatttctttgaggggtgaaagagggtgaaactcactgacaatgaataaaagtagggttttaagaaaatttatataaaaggac 20656595  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||  |||||        |||||||||||||||||||||||       |||| ||||||||||||||||    
T  20656594 aattttgatattataaaaaacttttaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 20656522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 188
Target Start/End: Complemental strand, 7149370 - 7149235
Alignment:
Q  53 agagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggcaattttggaattatnnnnnnnntttaagaaaatttgg 152  Q
    |||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||| |||||        |||||||||||||||    
T  7149370 agagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggcaattttggtattataaaaaacttttaagaaaatttgg 7149271  T
Q  153 gtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    ||||||||       |||| ||||||||||||||||    
T  7149270 gtgtaaccagaaaaacatggggtgtaaatagaaaaa 7149235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 160
Target Start/End: Original strand, 20048955 - 20049100
Alignment:
Q  16 acatcaaattgtttgatcg--atcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagg 113  Q
    ||||||||||||||| |||  |||||||  |||||| |||||||||||||||||  ||||||||||||||||||||||||||        |||||||||     
T  20048955 acatcaaattgtttgttcgtgatcgcttg-tggggtgaaagagggtgaaactcagtgacaatgaataaaattagggttttaagaaaatttatataaaaga 20049053  T
Q  114 gcaattttggaattatnnnnnnnntttaagaaaatttgggtgtaacc 160  Q
     ||||||||| |||||        |||||||||||||||||||||||    
T  20049054 acaattttggtattataaaaaacttttaagaaaatttgggtgtaacc 20049100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 40585564 - 40585484
Alignment:
Q  16 acatcaaattgtttgatcg--atcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    |||||||||||||||||||  |||||||  |||||| |||||||||||||||||  ||||||||||||||||||||||||||    
T  40585564 acatcaaattgtttgatcgtgatcgcttg-tggggtgaaagagggtgaaactcagtgacaatgaataaaattagggttttaa 40585484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 672720 - 672883
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||| |     |||||| ||||||||||||||||||    |||||||||||||||||||||||        ||||||||||||    
T  672720 acatcaaattgtttgatcgattg-----tggggtgaaagagggtgaaactcac----aatgaataaaattagggttttaagaaaatttatataaaagggc 672810  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||        ||||||||||||| |||||||||       |||| ||||||||||||||||    
T  672811 aattttggtattataaaaaacttttaagaaaatttaggtgtaaccagaaaaacatggggtgtaaatagaaaaa 672883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 10999192 - 10999078
Alignment:
Q  16 acatcaaattgtttgatcg--atcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagg 113  Q
    |||| ||||||||||||||  |||||||  |||||| |||||||||||||||||  ||||||||||||||||||||||||||        | ||||||||    
T  10999192 acattaaattgtttgatcgtgatcgcttg-tggggtgaaagagggtgaaactcagtgacaatgaataaaattagggttttaagaaaatttacataaaagg 10999094  T
Q  114 gcaattttggaattat 129  Q
    |||||||||| |||||    
T  10999093 gcaattttggtattat 10999078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 53974929 - 53975032
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||||||| ||||||          ||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  53974929 acatcaaattgtttgatcgatcgctttgtggggt----------gaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 53975018  T
Q  116 aattttggaattat 129  Q
    |||||||| |||||    
T  53975019 aattttggtattat 53975032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 95
Target Start/End: Complemental strand, 6267703 - 6267664
Alignment:
Q  56 gggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  6267703 gggtgaaactcactgacaatgaataaaattagggttttaa 6267664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 41174 - 41346
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  41174 acatcaaattgtttgatcgatcgctttatgggatgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 41273  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||  |||||         ||||||||||||||||||||||       |||| ||||||||||||||||    
T  41274 aattttgatattataaaaaaaaattaagaaaatttgggtgtaaccaaaaaaacatggggtgtaaatagaaaaa 41346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 1542 - 1370
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    |||||| ||||||||||||||| |||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||    
T  1542 acatcagattgtttgatcgatctctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaagaaaatttatataaaagggc 1443  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||         ||||||||||||||||||||||       |||| ||||||||||||||||    
T  1442 aattttggtattataaaaaaaaattaagaaaatttgggtgtaaccagaaaaacatggggtgtaaatagaaaaa 1370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 4659 - 4738
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  4659 acatcaaattgtttgatcgatcgctttgtggggtgaaagagggtgaaactcactgacaatgaataaaattagggttttaa 4738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 14510 - 14682
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaaannnnnnnatataaaagggc 115  Q
    ||||||||||||||||||||||| ||| |||||| |||||||||||||||||| ||||||||||||||||||| ||| ||        ||||||||||||    
T  14510 acatcaaattgtttgatcgatcgttttgtggggtgaaagagggtgaaactcactgacaatgaataaaattaggatttaaagaaaatttatataaaagggc 14609  T
Q  116 aattttggaattatnnnnnnnntttaagaaaatttgggtgtaaccnnnnnnncatgaggtgtaaatagaaaaa 188  Q
    |||||||| |||||         ||||||||||||||||||||||       |||| ||||||||||||||||    
T  14610 aattttggtattataaaaaaaaattaagaaaatttgggtgtaaccaaaaaaacatggggtgtaaatagaaaaa 14682  T

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Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 156522 - 156453
Alignment:
Q  16 acatcaaattgtttgatcgatcgctttatggggtaaaagagggtgaaactcaccgacaatgaataaaattagggttttaa 95  Q
    ||||||||||||||||||||||||||| ||||||          ||||||||| ||||||||||||||||||||||||||    
T  156522 acatcaaattgtttgatcgatcgctttgtggggt----------gaaactcactgacaatgaataaaattagggttttaa 156453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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