View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9456_low_2 (Length: 453)
Name: NF9456_low_2
Description: NF9456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9456_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 16 - 443
Target Start/End: Original strand, 38532696 - 38533123
Alignment:
| Q |
16 |
cattgttcatagccacagcgatcacaaccttcggtacatcctcatcactacattgtccaatctcctcctcgatccgagcccgatcaaacgacgacaacaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
38532696 |
cattgttcatagccacagcgatcacaaccttcggtacatcctcatcactacattgtccaatctcctcctcgatccgagcccgatcaaacgaggacaacaa |
38532795 |
T |
|
| Q |
116 |
tccctcaccgatccaactaagagccattcttcactacgccacatcacgtgttgttcctcaacaatcggtctcagagatcaagatcagtttcgatgtctta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38532796 |
tccctcaccgatccaactaagagccattcttcactacgccacatcacgtgttgttcctcaacaatcggtctcagagatcaagatcagtttcgatgtctta |
38532895 |
T |
|
| Q |
216 |
aaaacctacgatcgaccatgcaactttcttgtcttcggacttggccatgattctctcatgtgggcttcgtttaacccaggtggcaacacattattccttg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38532896 |
aaaacctacgatcgaccatgcaactttcttgtcttcggacttggccatgattctctcatgtgggcttcgtttaacccaggtggcaacacattattccttg |
38532995 |
T |
|
| Q |
316 |
aagaagatcctaaatgggttcaaaccgttcttaaagatgcaccgggccttcgagcccataccgttcgttatcgaacccagcttcgtgaagccaacaaact |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
38532996 |
aagaagatcctaaatgggttcaaaccgttcttaaagatgcaccgggccttcgagcccataccgttcgttatcgaacccagcttcgtgaagccagcaaact |
38533095 |
T |
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| Q |
416 |
catctcctcctaccgcaaggaacctatg |
443 |
Q |
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| T |
38533096 |
catctcctcctaccgcaaggaacctatg |
38533123 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 360
Target Start/End: Complemental strand, 34715467 - 34715422
Alignment:
| Q |
315 |
gaagaagatcctaaatgggttcaaaccgttcttaaagatgcaccgg |
360 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
34715467 |
gaagaagatcctaaatgggttcaaaccgttctcaaagacgcaccgg |
34715422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 328
Target Start/End: Original strand, 10188847 - 10188944
Alignment:
| Q |
231 |
ccatgcaactttcttgtcttcggacttggccatgattctctcatgtgggcttcgtttaacccaggtggcaacacattattccttgaagaagatcctaa |
328 |
Q |
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|||||||||||||| || || ||| |||| || || | |||||||||| ||||||||| ||| |||||| |||| ||| || |||||||||||||| |
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| T |
10188847 |
ccatgcaactttctcgtgtttggaattggtcacgacgcactcatgtgggattcgtttaatccacgtggcatcacactatatctcgaagaagatcctaa |
10188944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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