View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9456_low_3 (Length: 355)

Name: NF9456_low_3
Description: NF9456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9456_low_3
NF9456_low_3
[»] chr2 (2 HSPs)
chr2 (19-222)||(30954078-30954287)
chr2 (286-346)||(30953953-30954013)
[»] chr7 (2 HSPs)
chr7 (22-157)||(21237037-21237172)
chr7 (292-336)||(2455683-2455726)
[»] chr3 (1 HSPs)
chr3 (23-169)||(29808420-29808566)
[»] chr1 (1 HSPs)
chr1 (182-220)||(24535977-24536015)
[»] chr5 (2 HSPs)
chr5 (22-82)||(15921648-15921708)
chr5 (133-169)||(16855554-16855590)
[»] chr4 (1 HSPs)
chr4 (180-220)||(18906332-18906371)


Alignment Details
Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 30954287 - 30954078
Alignment:
Q  19 gtctgggtatccatgggtatggatagtatgatactcattcccaccctgttgcataaatatgataaccatgtcctccccataccttcgttggtaccaatta 118  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| || ||||  ||||| ||||    
T  30954287 gtctgggtatccatgggtatggatagtatgatacccattcccaccctgttggataaatatgataaccatgtcctccccatgccctcgtgagtacccatta 30954188  T
Q  119 tacgggtatctacaggtattgaggtattcatgcgtacccgtggatttttga------nnnnnnnnnnacaaagaataacttttctttaatttccaaaaaa 212  Q
    |||||||  |  | |||||||||||||||| ||||||||||||||||||||                |||||||||||||||||||||||||||||||||    
T  30954187 tacgggtgcccgcgggtattgaggtattcaggcgtacccgtggatttttgattttttttttttttttacaaagaataacttttctttaatttccaaaaaa 30954088  T
Q  213 cttcaactct 222  Q
    ||||||||||    
T  30954087 cttcaactct 30954078  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 286 - 346
Target Start/End: Complemental strand, 30954013 - 30953953
Alignment:
Q  286 ttcacatgacttcccaaattcctgaaataaaatgatatctttatttatatataagaataat 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30954013 ttcacatgacttcccaaattcctgaaataaaatgatatctttatttatatataagaataat 30953953  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 157
Target Start/End: Complemental strand, 21237172 - 21237037
Alignment:
Q  22 tgggtatccatgggtatggatagtatgatactcattcccaccctgttgcataaatatgataaccatgtcctccccataccttcgttggtaccaattatac 121  Q
    |||||| ||||||||| |||||||||||||| ||| |||  || |||| |||||||||||| || || || |||| |||| |||| |||||| | |||      
T  21237172 tgggtacccatgggtacggatagtatgatacccatccccgtcccgttggataaatatgatacccgtgcccgccccgtaccctcgtgggtacccactatgt 21237073  T
Q  122 gggtatctacaggtattgaggtattcatgcgtaccc 157  Q
     |||| || | ||||||||||| |||||| ||||||    
T  21237072 aggtacctgcgggtattgaggttttcatgggtaccc 21237037  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Complemental strand, 2455726 - 2455683
Alignment:
Q  292 tgacttcccaaattcctgaaataaaatgatatctttatttatata 336  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||||    
T  2455726 tgacttcccaa-ttcctgaaataaaaggatatctttatatatata 2455683  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 169
Target Start/End: Complemental strand, 29808566 - 29808420
Alignment:
Q  23 gggtatccatgggtatggatagtatgatactcattcccaccctgttgcataaatatgataaccatgtcctccccataccttcgttggtaccaattatacg 122  Q
    ||||| |||| |||| |||||||||||||||  | ||| ||| |||| ||||| ||||||  | ||||  || |||||| | || |||||| | ||| ||    
T  29808566 gggtacccataggtacggatagtatgatactagtccccgccccgttggataaaaatgatactcgtgtctgcctcataccctagtgggtacccactatgcg 29808467  T
Q  123 ggtatctacaggtattgaggtattcatgcgtacccgtggatttttga 169  Q
     ||| | | |||||||||||||| |||| |||||| |||||||||||    
T  29808466 agtacccataggtattgaggtatccatgggtacccatggatttttga 29808420  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 24535977 - 24536015
Alignment:
Q  182 aaagaataacttttctttaatttccaaaaaacttcaact 220  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  24535977 aaagaataacttttttttaattcccaaaaaacttcaact 24536015  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 15921708 - 15921648
Alignment:
Q  22 tgggtatccatgggtatggatagtatgatactcattcccaccctgttgcataaatatgata 82  Q
    |||||| ||||||||| ||||| |||||||| | ||||| ||| |||| ||||||||||||    
T  15921708 tgggtacccatgggtacggataatatgatacccgttcccgccccgttggataaatatgata 15921648  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 16855554 - 16855590
Alignment:
Q  133 ggtattgaggtattcatgcgtacccgtggatttttga 169  Q
    |||||||||||||||||| |||||| |||||||||||    
T  16855554 ggtattgaggtattcatgggtacccatggatttttga 16855590  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 18906332 - 18906371
Alignment:
Q  180 acaaagaataacttttctttaatttccaaaaaacttcaact 220  Q
    |||||||||||||||| ||||||| ||||||||||||||||    
T  18906332 acaaagaataactttt-tttaattaccaaaaaacttcaact 18906371  T

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