View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9456_low_6 (Length: 349)
Name: NF9456_low_6
Description: NF9456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9456_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 8829951 - 8830156
Alignment:
| Q |
18 |
ctatgattcataatcttatttaaatgagcttctcaattggttcaagnnnnnnn-gccacattttaaaacttatggccttgaaaattagagtatgaacaaa |
116 |
Q |
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| T |
8829951 |
ctatgattcataatcttatttcaatgagcttctcaattggttcaagttttttttgccacattttaaa-cttatggccttgaaaattagagtaggaacaaa |
8830049 |
T |
|
| Q |
117 |
tttaactgtgtacttttcatctagatagtgtatacttttttaaatttagctagtaagttccataaaagaactatattgtgatgtatgattttgtagagtt |
216 |
Q |
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| T |
8830050 |
tttagctgtgtacttttcatctagatagtgtatactttcttaaatttagctagtaagttccataaaagaactatactgtgatgtatgattttgtagagtt |
8830149 |
T |
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| Q |
217 |
agttatg |
223 |
Q |
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||||||| |
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| T |
8830150 |
agttatg |
8830156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 232 - 334
Target Start/End: Original strand, 8830303 - 8830405
Alignment:
| Q |
232 |
gtgtatgtgcgcgcgcgcaatagattataaaacaactatacatccatgaatcatttaatctattctataatattattacttacattacaaccactattgt |
331 |
Q |
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|||| |||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8830303 |
gtgtgtgtgtgcgcgcgcaatagattataaaacaactacacatccatgaatcatttactctattctataatattattacttacattacaaccactactgt |
8830402 |
T |
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| Q |
332 |
tgt |
334 |
Q |
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||| |
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|
| T |
8830403 |
tgt |
8830405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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