View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9456_low_8 (Length: 324)

Name: NF9456_low_8
Description: NF9456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9456_low_8
NF9456_low_8
[»] chr6 (2 HSPs)
chr6 (1-312)||(10978351-10978662)
chr6 (1-42)||(2879134-2879175)
[»] chr8 (2 HSPs)
chr8 (21-151)||(39438673-39438805)
chr8 (165-265)||(39438827-39438928)
[»] chr5 (1 HSPs)
chr5 (1-47)||(12029501-12029547)
[»] scaffold0210 (1 HSPs)
scaffold0210 (1-44)||(25224-25267)
[»] chr7 (1 HSPs)
chr7 (4-38)||(12865315-12865349)
[»] chr2 (1 HSPs)
chr2 (1-47)||(39730328-39730374)
[»] chr1 (1 HSPs)
chr1 (1-38)||(22624834-22624871)
[»] chr4 (1 HSPs)
chr4 (1-41)||(38656512-38656552)


Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 10978662 - 10978351
Alignment:
Q  1 cccaaacttaaaaggttgtttgtcctcaagtaacaaaatagaaagaattcttaatttgcattaatatttagatggcatacatttccatatgggttctcag 100  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978662 cccaagcttaaaaggttgtttgccctcaagtaacaaaatagaaagaattcttaatttgcattaatatttagatggcatacatttccatatgggttctcag 10978563  T
Q  101 accattgttcattccacttgaagttatgactacttcccgcttttgctcaagtggtaaaggcttaaatcatactctcaaccatactatatttcataatgta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978562 accattgttcattccacttgaagttatgactacttcccgcttttgctcaagtggtaaaggcttaaatcatactctcaaccatactatatttcataatgta 10978463  T
Q  201 tcatcttaaagccagcagggctgtcgaggcattttcacactccagccgacatgttaatgcatctttctaacttgaaacagttctaaatagtcattcaaaa 300  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978462 tcatcttaaagccagcagggcaatcgaggcattttcacactccagccgacgtgttaatgcatctttctaacttgaaacagttctaaatagtcattcaaaa 10978363  T
Q  301 tcaagtattatc 312  Q
    |||| |||||||    
T  10978362 tcaaatattatc 10978351  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2879175 - 2879134
Alignment:
Q  1 cccaaacttaaaaggttgtttgtcctcaagtaacaaaataga 42  Q
    ||||||||||| | |||| |||||||||||||||||||||||    
T  2879175 cccaaacttaatatgttgcttgtcctcaagtaacaaaataga 2879134  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 39438673 - 39438805
Alignment:
Q  21 tgtcctcaagtaacaaaatagaaagaattcttaatttgcattaatatttagatggcatacatttcca-tatgggttctcagaccattgttcattccactt 119  Q
    |||||||  |||||||||||| ||||| ||  ||||||||| ||||| |||||| ||||| ||||||  ||||||||||| || ||||||| ||| ||||    
T  39438673 tgtcctcgggtaacaaaatagcaagaagtcggaatttgcataaatatgtagatgacatacctttccagaatgggttctcaaactattgttcgttcaactt 39438772  T
Q  120 gaagttatgact-acttcccgcttttgctcaag 151  Q
    | || | ||||| |||| ||||||| |||||||    
T  39438773 gcagctttgactaacttaccgctttcgctcaag 39438805  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 39438827 - 39438928
Alignment:
Q  165 aatcatactctcaaccatactatatttcataatgtatcatcttaaagccagcagggct-gtcgaggcattttcacactccagccgacatgttaatgcatc 263  Q
    ||||||||||||||||| ||| |||| ||| |||||||||| ||||| |||||||| |  || |||||||||  |||||||  | | |||||||||||||    
T  39438827 aatcatactctcaaccacactctattccatcatgtatcatcataaagtcagcaggggtactcaaggcatttttccactccattcaatatgttaatgcatc 39438926  T
Q  264 tt 265  Q
    ||    
T  39438927 tt 39438928  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12029547 - 12029501
Alignment:
Q  1 cccaaacttaaaaggttgtttgtcctcaagtaacaaaatagaaagaa 47  Q
    |||||||||||||  || |||||||||||||||||||||||||||||    
T  12029547 cccaaacttaaaatattttttgtcctcaagtaacaaaatagaaagaa 12029501  T

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Target: scaffold0210 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 25224 - 25267
Alignment:
Q  1 cccaaacttaaaaggttgtttgtcctcaagtaacaaaatagaaa 44  Q
    ||||||||||| | |||| |||||||||||||||||||||||||    
T  25224 cccaaacttaatatgttgcttgtcctcaagtaacaaaatagaaa 25267  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 12865315 - 12865349
Alignment:
Q  4 aaacttaaaaggttgtttgtcctcaagtaacaaaa 38  Q
    ||||||||| |||||||||||||||||||||||||    
T  12865315 aaacttaaacggttgtttgtcctcaagtaacaaaa 12865349  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 39730374 - 39730328
Alignment:
Q  1 cccaaacttaaaaggttgtttgtcctcaagtaacaaaatagaaagaa 47  Q
    ||||||||||||| ||| |||||||||||| |||||||||| |||||    
T  39730374 cccaaacttaaaatgttatttgtcctcaagcaacaaaatagcaagaa 39730328  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22624871 - 22624834
Alignment:
Q  1 cccaaacttaaaaggttgtttgtcctcaagtaacaaaa 38  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  22624871 cccaaacttaaacggttgcttgtcctcaagtaacaaaa 22624834  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 38656552 - 38656512
Alignment:
Q  1 cccaaacttaaaaggttgtttgtcctcaagtaacaaaatag 41  Q
    ||||||||||||  |||||| ||||||||||||||||||||    
T  38656552 cccaaacttaaattgttgttcgtcctcaagtaacaaaatag 38656512  T

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