View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9456_low_9 (Length: 302)
Name: NF9456_low_9
Description: NF9456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9456_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 42146244 - 42146529
Alignment:
| Q |
1 |
ctaataacagtcaaatttacctaaaaactacataaacaattaaatctgatagtttcataatat--gagtaaataagtactacctccaaagtattgatggt |
98 |
Q |
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| T |
42146244 |
ctaataacactcaaatttacctaaaaactacataaacaattaaatctgatagtttcataatatatgagtaaataagtactacctccaaagtattgatggt |
42146343 |
T |
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| Q |
99 |
aacattaagcagagtaggaagtgctctacttccaacatgcacatctccttccacagacaaattttcataacgtacttcaatttttggaatttcaatcccc |
198 |
Q |
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| T |
42146344 |
aacattaagcagagtaggaagtgctctacttccaacatgcacatctccttccacagacaaattttcataacgtacttcaatttttggaatttcaatcccc |
42146443 |
T |
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| Q |
199 |
accctacattgtattggaattttggaacaatagtcaacaaccaactaatgtggtttatcaaacaatatattgtgctatgtttgact |
284 |
Q |
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| T |
42146444 |
accctacattgtattggatttttggaacaatagtcaacaaccaactaatgtggtttatcaaacaatatattgtgctatgtttgact |
42146529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 42177997 - 42178143
Alignment:
| Q |
68 |
aaataagtactacctccaaagtattgatggtaacattaagcagagtaggaagtgctctacttccaacatgcacatctccttccacagacaaattttcata |
167 |
Q |
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| T |
42177997 |
aaataagtagtacctccaaagtgttgatggtaacattaagcaaagtaggaagagctctgctaccaacatacacatctccttccacagataaattctcata |
42178096 |
T |
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| Q |
168 |
acgtacttcaatttttggaatttcaatccccaccctacattgtattg |
214 |
Q |
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| T |
42178097 |
acgaacttcaatttttggaatttcaatccccaccctatattgtattg |
42178143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 78 - 214
Target Start/End: Original strand, 42158275 - 42158411
Alignment:
| Q |
78 |
tacctccaaagtattgatggtaacattaagcagagtaggaagtgctctacttccaacatgcacatctccttccacagacaaattttcataacgtacttca |
177 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||| ||||| || ||||||| |||||||||||||||||| ||||| |||||||| |||||| |
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| T |
42158275 |
tacctccaatgtattgatggtaacattaagaagagtaggaagagctctgctaccaacatacacatctccttccacagataaattctcataacggacttca |
42158374 |
T |
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| Q |
178 |
atttttggaatttcaatccccaccctacattgtattg |
214 |
Q |
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| T |
42158375 |
atttttggaatttcaatccccaccctacattgtattg |
42158411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 203
Target Start/End: Original strand, 42137540 - 42137642
Alignment:
| Q |
101 |
cattaagcagagtaggaagtgctctacttccaacatgcacatctccttccacagacaaattttcataacgtacttcaatttttggaatttcaatccccac |
200 |
Q |
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|||| ||||| |||||||||| |||| | ||||||||||||| ||| ||||| || | |||||| | |||||||||||||||||||||||||||||||| |
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| T |
42137540 |
catttagcagggtaggaagtgatctattaccaacatgcacatttccctccaccgatacattttcgaaccgtacttcaatttttggaatttcaatccccac |
42137639 |
T |
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| Q |
201 |
cct |
203 |
Q |
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||| |
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| T |
42137640 |
cct |
42137642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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