View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9457_low_3 (Length: 420)

Name: NF9457_low_3
Description: NF9457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9457_low_3
NF9457_low_3
[»] chr6 (8 HSPs)
chr6 (16-411)||(11667238-11667624)
chr6 (177-284)||(11627906-11628013)
chr6 (171-310)||(11622569-11622708)
chr6 (183-283)||(11705929-11706029)
chr6 (183-284)||(11669778-11669879)
chr6 (177-284)||(11734902-11735009)
chr6 (179-281)||(11760078-11760180)
chr6 (179-281)||(12089243-12089345)
[»] chr8 (1 HSPs)
chr8 (183-284)||(16389191-16389292)
[»] scaffold0196 (1 HSPs)
scaffold0196 (192-284)||(16945-17037)
[»] scaffold0019 (1 HSPs)
scaffold0019 (171-255)||(4405-4489)
[»] chr1 (1 HSPs)
chr1 (197-284)||(44815844-44815931)


Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 16 - 411
Target Start/End: Original strand, 11667238 - 11667624
Alignment:
Q  16 acaatttcttatgtcttcgaaaataattaagcttatttgatacatacttcggacacacacaaaaatcaatgtttgttgttggggagatgatatggtttga 115  Q
    |||||||||||||||||| |||||||||||| |||| ||||| ||||||| ||||||| | ||||||||||||||||         |||| |||||||||    
T  11667238 acaatttcttatgtcttccaaaataattaagtttatctgatatatacttcagacacacgcgaaaatcaatgtttgtt---------atgacatggtttga 11667328  T
Q  116 tgaaaaagaatatgtttgatcagannnnnnnnnacttcaaagaaaagaaagacaatgactatgtttacaggaaaattggcggagtatgacgagccaatga 215  Q
    ||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11667329 tgaaaaagaatatgtttgatcagatttttttttacttcaaagaaaagaaagacaatgactatgtttacaggaaaattggcggagtatgacgagccaatga 11667428  T
Q  216 acttgatgaagagagaagaatcgatgtttaggaagcttgtacaagaatattggtctcattctcagtctggaaatttgcattgatgctaccaatattttct 315  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11667429 acttgatgaagagagaagaatcgatgtttaggaagcttgtaaaagaatattggtctcattctcagtctggaaatttgcattgatgctaccaatattttct 11667528  T
Q  316 taagccataactatttcttgttctctttcttttcttttgtgttagcaataaatcaagaaagtaagcaggatgtacaatgcgttctgttagaataat 411  Q
    || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  11667529 tatgccataactatttcttgttctctctcttttcttttgtgttagcaataaatcaagaaagtaagcaggatttacaatgtgttctgttagaataat 11667624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 11628013 - 11627906
Alignment:
Q  177 tgtttacaggaaaattggcggagtatgacgagccaatgaacttgatgaagagagaagaatcgatgtttaggaagcttgtacaagaatattggtctcattc 276  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||  | ||||| ||||||||||     
T  11628013 tgttttcaggaaaattggcggagtatgacgagccaaagaacttgatgaagagagaagaatcgttgttcaggaagcttgtcaaggaatactggtctcattt 11627914  T
Q  277 tcagtctg 284  Q
    ||||||||    
T  11627913 tcagtctg 11627906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 171 - 310
Target Start/End: Original strand, 11622569 - 11622708
Alignment:
Q  171 tgactatgtttacaggaaaattggcggagtatgacgagccaatgaacttgatgaagagagaagaatcgatgtttaggaagcttgtacaagaatattggtc 270  Q
    ||||||||||| ||||||||||||||||||| ||||| |||| || |||||||||||| ||| | |||||||| ||| |||||||  ||||||| |||||    
T  11622569 tgactatgttttcaggaaaattggcggagtacgacgaaccaacgagcttgatgaagagggaaaactcgatgttcaggcagcttgtcaaagaatactggtc 11622668  T
Q  271 tcattctcagtctggaaatttgcattgatgctaccaatat 310  Q
    ||||| ||||||   | | | |||||||||||||||||||    
T  11622669 tcattttcagtccacagaatcgcattgatgctaccaatat 11622708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 183 - 283
Target Start/End: Complemental strand, 11706029 - 11705929
Alignment:
Q  183 caggaaaattggcggagtatgacgagccaatgaacttgatgaagagagaagaatcgatgtttaggaagcttgtacaagaatattggtctcattctcagtc 282  Q
    |||||||| |||||||||||||||||||||  |||||||||||||||||||||||| |||| ||||| |||||  | ||||| |||||||||| ||||||    
T  11706029 caggaaaactggcggagtatgacgagccaacaaacttgatgaagagagaagaatcgttgttcaggaaacttgtcaaggaatactggtctcattttcagtc 11705930  T
Q  283 t 283  Q
    |    
T  11705929 t 11705929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 183 - 284
Target Start/End: Complemental strand, 11669879 - 11669778
Alignment:
Q  183 caggaaaattggcggagtatgacgagccaatgaacttgatgaagagagaagaatcgatgtttaggaagcttgtacaagaatattggtctcattctcagtc 282  Q
    |||||||| | ||||||||||||||||||| ||||||||||||||||||||||||  |||| |||||||||||  | ||||| |||||  ||||||||||    
T  11669879 caggaaaactagcggagtatgacgagccaacgaacttgatgaagagagaagaatcattgttcaggaagcttgtcaaggaatactggtcaaattctcagtc 11669780  T
Q  283 tg 284  Q
    ||    
T  11669779 tg 11669778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 177 - 284
Target Start/End: Complemental strand, 11735009 - 11734902
Alignment:
Q  177 tgtttacaggaaaattggcggagtatgacgagccaatgaacttgatgaagagagaagaatcgatgtttaggaagcttgtacaagaatattggtctcattc 276  Q
    ||||||||||||||||||  |||||||| ||||||||||| |||||||||||||||  |||| ||||| | || |||||| |||||||||||||| |||     
T  11735009 tgtttacaggaaaattgggtgagtatgatgagccaatgaagttgatgaagagagaaagatcgttgtttggaaaccttgtaaaagaatattggtcttattt 11734910  T
Q  277 tcagtctg 284  Q
    | ||||||    
T  11734909 taagtctg 11734902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 11760078 - 11760180
Alignment:
Q  179 tttacaggaaaattggcggagtatgacgagccaatgaacttgatgaagagagaagaatcgatgtttaggaagcttgtacaagaatattggtctcattctc 278  Q
    ||||||||||| ||||| |||||||| ||||||||||| || ||||||| |||| ||||  | ||| |  | |||||| | |||||||||||||||| ||    
T  11760078 tttacaggaaagttggctgagtatgatgagccaatgaagttaatgaagaaagaaaaatcattatttggacaacttgtaaaggaatattggtctcattttc 11760177  T
Q  279 agt 281  Q
    |||    
T  11760178 agt 11760180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 12089345 - 12089243
Alignment:
Q  179 tttacaggaaaattggcggagtatgacgagccaatgaacttgatgaagagagaagaatcgatgtttaggaagcttgtacaagaatattggtctcattctc 278  Q
    ||||||||||| ||||| |||||||| || |||||||| || |||||||  |||  |||| ||||| |  | |||||| | |||||||||||||||| ||    
T  12089345 tttacaggaaagttggctgagtatgatgaaccaatgaagttaatgaagaaggaaacatcgttgtttggacaacttgtaaaggaatattggtctcattttc 12089246  T
Q  279 agt 281  Q
    |||    
T  12089245 agt 12089243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 183 - 284
Target Start/End: Complemental strand, 16389292 - 16389191
Alignment:
Q  183 caggaaaattggcggagtatgacgagccaatgaacttgatgaagagagaagaatcgatgtttaggaagcttgtacaagaatattggtctcattctcagtc 282  Q
    |||||||| | | ||||||||||||||||| ||||||||||||||||||||||||| |||| ||||| |||||  | ||||| |||||| ||| ||||||    
T  16389292 caggaaaactagtggagtatgacgagccaacgaacttgatgaagagagaagaatcgttgttcaggaaacttgtcaaggaatactggtcttattttcagtc 16389193  T
Q  283 tg 284  Q
    ||    
T  16389192 tg 16389191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 192 - 284
Target Start/End: Original strand, 16945 - 17037
Alignment:
Q  192 tggcggagtatgacgagccaatgaacttgatgaagagagaagaatcgatgtttaggaagcttgtacaagaatattggtctcattctcagtctg 284  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||  ||||| |||| |||||   |||||| |||||||||| ||| ||||    
T  16945 tggcggagtatgacgagccaacgaacttgatgaaaagagaagaatctttgtttcggaaacttgttatagaatactggtctcattttcaatctg 17037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 4489 - 4405
Alignment:
Q  171 tgactatgtttacaggaaaattggcggagtatgacgagccaatgaacttgatgaagagagaagaatcgatgtttaggaagcttgt 255  Q
    ||||| ||||| ||||||||||||| |||||||| ||||| |  |||||||||||||||||||||||| |||| ||||| |||||    
T  4489 tgactgtgttttcaggaaaattggctgagtatgatgagcccacaaacttgatgaagagagaagaatcgttgttcaggaaacttgt 4405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 197 - 284
Target Start/End: Original strand, 44815844 - 44815931
Alignment:
Q  197 gagtatgacgagccaatgaacttgatgaagagagaagaatcgatgtttaggaagcttgtacaagaatattggtctcattctcagtctg 284  Q
    |||||||| |||||||||||||||||||||| |||||  ||  ||||| ||||||||||  |||||||||||||||||| ||| ||||    
T  44815844 gagtatgatgagccaatgaacttgatgaagaaagaagggtctttgtttgggaagcttgtcaaagaatattggtctcattttcaatctg 44815931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University