View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9457_low_5 (Length: 332)
Name: NF9457_low_5
Description: NF9457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9457_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 320
Target Start/End: Complemental strand, 2787435 - 2787126
Alignment:
| Q |
9 |
tggtgtttgtggcgatcgctttttcggattatagggtgagtaattgtttgtttcctggacatgaaagggaaatggatcaagttatggagagttttccatt |
108 |
Q |
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| T |
2787435 |
tggtgtttgtggcgatcgctttttcggattatagggtgagtaattgtttgtttcctggacatgaaagggaaatggatcaagttatggagagttttccatt |
2787336 |
T |
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| Q |
109 |
gatggttggaattgtttgtagcggtttgtttcttatttttccaacttcaaggcgtggaattggatgcatgtctgcctaattttttagtatatatgtttga |
208 |
Q |
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| T |
2787335 |
gatggttggaattgtttgtagcggtttgtttcttatttttccaacttcaaggcgtggaattggatgcatgtctgcctaattttttagt--atatgtttga |
2787238 |
T |
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| Q |
209 |
tttaatttgtatatttgtttgtacttttcttggtcgattatattatccattgacgtttgtatcaaaataatcaatgtgaagtttatgtgatttaatattt |
308 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2787237 |
tttaatttgtatatttgtttgtacttttcttggtcaattatattatccattgacgtttgtatcaaaataatcaatgtgaagtttatgtaatttaatattt |
2787138 |
T |
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| Q |
309 |
tatgatattttt |
320 |
Q |
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| |||||||||| |
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| T |
2787137 |
tgtgatattttt |
2787126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 19578159 - 19578356
Alignment:
| Q |
9 |
tggtgtttgtggcgatcgctttttcggattatagggtgagtaattgtttgtttcctggacatgaaagggaaatggatcaagttatggagagttttccatt |
108 |
Q |
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||||||||||||| ||||||||||||||||||||||| | ||||||||| |||||||||||||||| || |||||||||||||||||||||||||| || |
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| T |
19578159 |
tggtgtttgtggctatcgctttttcggattatagggttactaattgtttatttcctggacatgaaaaagagatggatcaagttatggagagttttccttt |
19578258 |
T |
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| Q |
109 |
gatggttggaattgtttgtagcggtttgtttcttatttttccaacttcaaggcgtggaattggatgcatgtctgcctaattttttagtatatatgttt |
206 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
19578259 |
gatggttggaataatttgtagcggtttgttccttatttttcctacttcaaggcatggaattggatgcatgtcttcctaatttattagtatatatgttt |
19578356 |
T |
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