View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9457_low_6 (Length: 326)
Name: NF9457_low_6
Description: NF9457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9457_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 5 - 312
Target Start/End: Original strand, 23747475 - 23747782
Alignment:
| Q |
5 |
gtttcgtgttggccctattttccttgatcttaatgtttagtgttagtgattcaattctcactaaattctattatagctgtttattgatttattaagtacc |
104 |
Q |
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| T |
23747475 |
gtttcttgttggccctattttccttgatcttaatgtttagtgttagtgattcaattctcactaaattctattatagctgttgattgatttattaagtacc |
23747574 |
T |
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| Q |
105 |
aaatagtatagtttgtataagggtttattaatgcnnnnnnnnncattgtcttgtccttgttctcaatgtagagtacatcagtaagggaaatgatggtgaa |
204 |
Q |
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| T |
23747575 |
aaatagtatagtttgtataagggtttattaatgctttttttttcattgtcttgtccttgttctcaatgtagagtacatcagtaagggaaatgatggtgaa |
23747674 |
T |
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| Q |
205 |
agtcagaacaaaacaaataaggatatgagctatatttatcaagaacaaagggtgcaaccatgtcaccttagctcatcaatctattatggtggccaagacg |
304 |
Q |
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| T |
23747675 |
actcagaacaaaacaaataaggatatgagctatatttatcaagaacaaagggtgcaaccatgtcaccttagctcatcaatctattatggtggccaagacg |
23747774 |
T |
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| Q |
305 |
tatattct |
312 |
Q |
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| T |
23747775 |
tatattct |
23747782 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 6215933 - 6215980
Alignment:
| Q |
262 |
ccatgtcaccttagctcatcaatctattatggtggccaagacgtatat |
309 |
Q |
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| T |
6215933 |
ccatgtcaccttagttcatcaatctattatggtggccaagacatatat |
6215980 |
T |
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