View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9458_low_2 (Length: 365)

Name: NF9458_low_2
Description: NF9458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9458_low_2
NF9458_low_2
[»] chr3 (24 HSPs)
chr3 (1-137)||(3455549-3455685)
chr3 (231-349)||(3455337-3455455)
chr3 (44-135)||(3208583-3208674)
chr3 (85-136)||(35371047-35371098)
chr3 (85-136)||(27841635-27841686)
chr3 (87-128)||(11224776-11224817)
chr3 (88-136)||(14745126-14745174)
chr3 (86-136)||(10301074-10301124)
chr3 (94-136)||(10338886-10338928)
chr3 (86-136)||(10732054-10732104)
chr3 (1-55)||(28909611-28909665)
chr3 (86-136)||(38242441-38242491)
chr3 (2-73)||(20288211-20288283)
chr3 (89-136)||(26886416-26886463)
chr3 (62-136)||(53614198-53614273)
chr3 (90-136)||(34819210-34819256)
chr3 (86-136)||(48083367-48083417)
chr3 (90-130)||(7270467-7270507)
chr3 (85-121)||(12107919-12107955)
chr3 (85-136)||(41264578-41264629)
chr3 (1-56)||(43174711-43174766)
chr3 (62-135)||(49379819-49379891)
chr3 (36-135)||(13621011-13621109)
chr3 (86-122)||(28909550-28909586)
[»] chr5 (18 HSPs)
chr5 (1-137)||(1009240-1009376)
chr5 (1-120)||(8523687-8523806)
chr5 (231-349)||(1009470-1009588)
chr5 (231-349)||(8523461-8523579)
chr5 (1-137)||(1010290-1010424)
chr5 (1-137)||(8521311-8521445)
chr5 (61-135)||(11262508-11262582)
chr5 (55-136)||(1102729-1102808)
chr5 (88-136)||(30910885-30910933)
chr5 (46-136)||(30859096-30859187)
chr5 (46-136)||(39603954-39604045)
chr5 (86-131)||(27705246-27705291)
chr5 (2-136)||(22047789-22047924)
chr5 (86-136)||(10735903-10735953)
chr5 (86-121)||(22308740-22308775)
chr5 (2-57)||(32759052-32759107)
chr5 (86-121)||(33173901-33173936)
chr5 (88-133)||(15548381-15548426)
[»] chr8 (23 HSPs)
chr8 (26-137)||(42878755-42878866)
chr8 (238-349)||(42878545-42878656)
chr8 (1-137)||(42877675-42877809)
chr8 (36-132)||(9854809-9854904)
chr8 (86-136)||(24192589-24192639)
chr8 (44-137)||(42872115-42872206)
chr8 (1-132)||(38696364-38696494)
chr8 (86-136)||(32798457-32798507)
chr8 (30-133)||(42098648-42098751)
chr8 (2-76)||(45437466-45437541)
chr8 (86-136)||(10669371-10669421)
chr8 (54-136)||(32695199-32695282)
chr8 (90-137)||(43202240-43202287)
chr8 (2-131)||(4810526-4810651)
chr8 (1-55)||(14840905-14840959)
chr8 (90-136)||(20180600-20180646)
chr8 (93-136)||(17455194-17455237)
chr8 (93-136)||(40437522-40437565)
chr8 (86-137)||(42362675-42362726)
chr8 (90-136)||(13117558-13117604)
chr8 (86-136)||(31845721-31845770)
chr8 (1-55)||(38697012-38697066)
chr8 (89-131)||(45281119-45281161)
[»] scaffold0011 (2 HSPs)
scaffold0011 (1-131)||(127489-127618)
scaffold0011 (1-57)||(128595-128651)
[»] chr4 (32 HSPs)
chr4 (1-137)||(40723284-40723418)
chr4 (1-73)||(13533248-13533320)
chr4 (46-136)||(2312406-2312497)
chr4 (46-136)||(7707689-7707780)
chr4 (36-136)||(4871585-4871684)
chr4 (86-136)||(27850863-27850913)
chr4 (86-136)||(44498601-44498651)
chr4 (86-136)||(56085487-56085537)
chr4 (86-131)||(52240018-52240063)
chr4 (44-130)||(1794510-1794597)
chr4 (1-56)||(40724849-40724904)
chr4 (86-136)||(11968652-11968702)
chr4 (90-131)||(15450005-15450046)
chr4 (36-135)||(26496236-26496334)
chr4 (86-121)||(13165635-13165670)
chr4 (13-121)||(52963637-52963743)
chr4 (87-137)||(34326868-34326918)
chr4 (2-132)||(53432119-53432248)
chr4 (86-131)||(6348294-6348339)
chr4 (86-127)||(6349486-6349527)
chr4 (86-135)||(52138720-52138769)
chr4 (302-349)||(1520923-1520970)
chr4 (86-121)||(4714160-4714195)
chr4 (85-136)||(26629930-26629980)
chr4 (93-136)||(36845557-36845600)
chr4 (2-121)||(53435694-53435812)
chr4 (90-132)||(7053321-7053363)
chr4 (86-136)||(19750220-19750270)
chr4 (86-136)||(19789536-19789586)
chr4 (86-136)||(49896510-49896560)
chr4 (90-132)||(56157426-56157468)
chr4 (100-137)||(8682772-8682809)
[»] chr1 (26 HSPs)
chr1 (1-137)||(48096957-48097091)
chr1 (86-136)||(13147342-13147392)
chr1 (86-136)||(16965051-16965101)
chr1 (2-131)||(15746697-15746825)
chr1 (46-136)||(45584933-45585024)
chr1 (86-136)||(3617423-3617473)
chr1 (86-136)||(9226141-9226191)
chr1 (86-121)||(41873912-41873947)
chr1 (90-136)||(9482599-9482645)
chr1 (86-136)||(44999388-44999438)
chr1 (86-136)||(48527674-48527724)
chr1 (86-136)||(52078070-52078120)
chr1 (36-135)||(14478357-14478455)
chr1 (86-127)||(34350253-34350294)
chr1 (40-135)||(51445685-51445779)
chr1 (86-130)||(35943379-35943423)
chr1 (86-137)||(18821664-18821715)
chr1 (89-136)||(26802083-26802130)
chr1 (1-56)||(46467202-46467257)
chr1 (1-56)||(46468724-46468779)
chr1 (90-136)||(15232897-15232943)
chr1 (86-132)||(46110421-46110467)
chr1 (2-55)||(7161366-7161418)
chr1 (90-119)||(14471000-14471029)
chr1 (100-132)||(12665944-12665976)
chr1 (1-57)||(46318621-46318677)
[»] chr7 (23 HSPs)
chr7 (46-136)||(32255090-32255181)
chr7 (86-136)||(46201271-46201321)
chr7 (1-73)||(9662224-9662296)
chr7 (88-136)||(35295841-35295889)
chr7 (46-136)||(13564164-13564254)
chr7 (46-136)||(22336080-22336170)
chr7 (86-136)||(43460748-43460798)
chr7 (47-131)||(40811422-40811506)
chr7 (46-136)||(11502346-11502437)
chr7 (46-132)||(47059209-47059295)
chr7 (39-135)||(39981411-39981506)
chr7 (86-136)||(43441486-43441536)
chr7 (90-136)||(44372873-44372919)
chr7 (90-136)||(44381729-44381775)
chr7 (91-132)||(2414890-2414931)
chr7 (1-76)||(25533244-25533320)
chr7 (90-121)||(22115105-22115136)
chr7 (89-136)||(22537703-22537750)
chr7 (90-121)||(40509675-40509706)
chr7 (62-135)||(41328336-41328408)
chr7 (86-132)||(669319-669364)
chr7 (86-136)||(15992275-15992325)
chr7 (86-130)||(47060408-47060452)
[»] scaffold0034 (1 HSPs)
scaffold0034 (46-135)||(108614-108703)
[»] scaffold2071 (1 HSPs)
scaffold2071 (1-130)||(613-741)
[»] scaffold0118 (1 HSPs)
scaffold0118 (46-136)||(43499-43590)
[»] scaffold0077 (1 HSPs)
scaffold0077 (46-136)||(54109-54200)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-129)||(32628-32753)
[»] chr6 (11 HSPs)
chr6 (86-129)||(12669863-12669906)
chr6 (46-136)||(17837717-17837807)
chr6 (86-136)||(7311650-7311700)
chr6 (46-136)||(23392315-23392405)
chr6 (3-57)||(34093433-34093487)
chr6 (88-136)||(29381655-29381703)
chr6 (90-136)||(11967360-11967406)
chr6 (36-135)||(11722877-11722975)
chr6 (90-134)||(5187549-5187593)
chr6 (89-136)||(18346675-18346722)
chr6 (86-119)||(32506969-32507002)
[»] chr2 (21 HSPs)
chr2 (2-121)||(34464025-34464143)
chr2 (2-119)||(34512871-34512985)
chr2 (44-130)||(11547758-11547845)
chr2 (46-136)||(29219486-29219577)
chr2 (46-136)||(29332785-29332876)
chr2 (86-136)||(8320897-8320947)
chr2 (86-136)||(11317293-11317343)
chr2 (86-136)||(32469290-32469340)
chr2 (86-136)||(42641786-42641836)
chr2 (86-136)||(18616930-18616980)
chr2 (86-136)||(43033221-43033271)
chr2 (86-132)||(43034400-43034446)
chr2 (88-129)||(16295150-16295191)
chr2 (88-136)||(30748621-30748669)
chr2 (1-57)||(35903564-35903620)
chr2 (85-136)||(1085313-1085364)
chr2 (2-76)||(34147193-34147268)
chr2 (2-57)||(34148364-34148419)
chr2 (89-131)||(6030400-6030442)
chr2 (86-132)||(34513483-34513529)
chr2 (2-56)||(35904748-35904802)
[»] scaffold0031 (2 HSPs)
scaffold0031 (86-130)||(124108-124152)
scaffold0031 (46-130)||(125163-125248)
[»] scaffold0620 (1 HSPs)
scaffold0620 (3-57)||(8767-8821)
[»] scaffold0128 (1 HSPs)
scaffold0128 (2-55)||(22045-22098)
[»] scaffold0201 (1 HSPs)
scaffold0201 (86-121)||(21267-21302)
[»] scaffold0219 (1 HSPs)
scaffold0219 (86-136)||(8117-8166)
[»] scaffold1251 (1 HSPs)
scaffold1251 (2-54)||(1092-1144)


Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 3455685 - 3455549
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgttatggtggaccaacc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3455685 ctaataaaactcatgttttggtccttcatgtttgtctccgtcagtcaaataaatcctgacagttaactttaaccccccaaaatgttatggtggaccaacc 3455586  T
Q  101 ttaagagtggtccaccatagatcatattaattattta 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  3455585 ttaagagtggtccaccatagatcatattaattattta 3455549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 231 - 349
Target Start/End: Complemental strand, 3455455 - 3455337
Alignment:
Q  231 ttttccagaaaaaatcagaaacctcgaccatcatcagtaaatggaaaattctttactctttccatcatcattcatcaacaataacaacatcataatcacc 330  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  3455455 ttttccagaaaaattcagaaacctcgaccatcatcagtaaatggaaaattctttactctttccatcatcattcatcaacaacaacaacatcataatcacc 3455356  T
Q  331 attaatttctatcaataac 349  Q
    |||||||||||||||||||    
T  3455355 attaatttctatcaataac 3455337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 44 - 135
Target Start/End: Original strand, 3208583 - 3208674
Alignment:
Q  44 gtcaaataaatcctgacagttaactttaaccccccagaatgttatggtggaccaaccttaagagtggtccaccatagatcatattaattatt 135  Q
    |||||||||||||| || ||||| |||||||||  |  || ||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  3208583 gtcaaataaatccttaccgttaagtttaaccccaaatgatattatggtggaccaaccttaagagtggtccaccataaatcctattaattatt 3208674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 35371047 - 35371098
Alignment:
Q  85 ttatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35371047 ttatggtggaccaaccttaagagtggtccaccatagatcctattaattattt 35371098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 27841686 - 27841635
Alignment:
Q  85 ttatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  27841686 ttatggtggaccaaccttaagagtggtccaccatagatcctaataattattt 27841635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 11224817 - 11224776
Alignment:
Q  87 atggtggaccaaccttaagagtggtccaccatagatcatatt 128  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  11224817 atggtggaccaaccttaagagtggtccaccatagatcatatt 11224776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 14745174 - 14745126
Alignment:
Q  88 tggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  14745174 tggtggaccaaccttaagagtggttcaccatagatcctattaattattt 14745126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 10301074 - 10301124
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||| |||||||||||||||| ||||||||||||| ||||||||||||    
T  10301074 tatggtgaaccaaccttaagagtgatccaccatagatcctattaattattt 10301124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 10338886 - 10338928
Alignment:
Q  94 accaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  10338886 accaaccttaagagtggtccaccatagatcctattaattattt 10338928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 10732104 - 10732054
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||||||||||||| |||| ||||||||||||||| ||||||||||||    
T  10732104 tatggtggaccaacctttagagcggtccaccatagatcctattaattattt 10732054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 28909665 - 28909611
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatc 55  Q
    |||||||||||||||||||||||| ||| ||||||||||||  ||||||||||||    
T  28909665 ctaataaaactcatgttttggtccctcacgtttgtctccgttggtcaaataaatc 28909611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 38242491 - 38242441
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  38242491 tatggtggaccaaccttaagagtggtccaccataaattctattaattattt 38242441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 20288283 - 20288211
Alignment:
Q  2 taataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaat-cctgacagttaactttaac 73  Q
    ||||||||||||||| ||||||| ||| ||||||||| || |||||||||||| |||||| ||||| ||||||    
T  20288283 taataaaactcatgtgttggtccctcaagtttgtctctgttagtcaaataaatccctgactgttaagtttaac 20288211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 26886416 - 26886463
Alignment:
Q  89 ggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||||    
T  26886416 ggtgaaccaaccttaagagtggtccaccataaatcctattaattattt 26886463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 53614273 - 53614198
Alignment:
Q  62 gttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||| |||||||||  | ||||| ||||||||| || ||||||||||||||||||||||||| || |||||||||    
T  53614273 gttaagtttaaccccaaataatgtctatggtggatcatccttaagagtggtccaccatagatcctagtaattattt 53614198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 34819256 - 34819210
Alignment:
Q  90 gtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  34819256 gtggatcaaccttaagagtggtccaccatagatcctattacttattt 34819210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 48083367 - 48083417
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||| || |||||||||||||||| |||||||||| ||||||||||||    
T  48083367 tatggtgcactaaccttaagagtggtctaccatagatcctattaattattt 48083417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 7270467 - 7270507
Alignment:
Q  90 gtggaccaaccttaagagtggtccaccatagatcatattaa 130  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  7270467 gtggaccaaccttaagagtggtctaccatagatcttattaa 7270507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 121
Target Start/End: Complemental strand, 12107955 - 12107919
Alignment:
Q  85 ttatggtggaccaaccttaagagtggtccaccataga 121  Q
    |||||||||||||||||||| ||||||||||||||||    
T  12107955 ttatggtggaccaaccttaaaagtggtccaccataga 12107919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 41264629 - 41264578
Alignment:
Q  85 ttatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||| || | ||||||||||| ||||||||||| ||||||||||||    
T  41264629 ttatggtggatcatctttaagagtggtacaccatagatcctattaattattt 41264578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 43174766 - 43174711
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcc 56  Q
    |||||||||||||||||||||||| |||  | | ||||||||| ||||||||||||    
T  43174766 ctaataaaactcatgttttggtccctcaaatctatctccgtcaatcaaataaatcc 43174711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 49379819 - 49379891
Alignment:
Q  62 gttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattatt 135  Q
    |||||||||||||||| |  |||| ||||||||||| || |||| | |||||||||||||||| |||||||||||    
T  49379819 gttaactttaacccccaa--atgtctatggtggaccgactttaaaaatggtccaccatagatcctattaattatt 49379891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 13621011 - 13621109
Alignment:
Q  36 ctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattat 134  Q
    |||||||||||||| |  |||| || ||||||||||||| || |  |||| ||||||||||| || | || | |||||||||||||||| ||||||||||    
T  13621011 ctccgtcagtcaaaaaggtcctcactgttaactttaacctccaa--atgtctatggtggaccgacttaaaaaatggtccaccatagatcctattaattat 13621108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 122
Target Start/End: Original strand, 28909550 - 28909586
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagat 122  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  28909550 tatggtggaccaaccttaagagtggttcaccacagat 28909586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 1009240 - 1009376
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgttatggtggaccaacc 100  Q
    |||||||||||||||||||||| | |||||||||||||| ||||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||||||    
T  1009240 ctaataaaactcatgttttggttcttcatgtttgtctccatcagtcaaataaatcttgatagttaacttttaccccccaaaatgttatggtggaccaacc 1009339  T
Q  101 ttaagagtggtccaccatagatcatattaattattta 137  Q
    ||||||||||||||||||||||| |||||||||||||    
T  1009340 ttaagagtggtccaccatagatcctattaattattta 1009376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 8523806 - 8523687
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgttatggtggaccaacc 100  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8523806 ctaataaaactcatgttttgatccttcatgtttgtctccgtcagtcaaataaatcctgacagttaactttaaccccccaaaatgttatggtggaccaacc 8523707  T
Q  101 ttaagagtggtccaccatag 120  Q
    || |||||||||||||||||    
T  8523706 ttcagagtggtccaccatag 8523687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 231 - 349
Target Start/End: Original strand, 1009470 - 1009588
Alignment:
Q  231 ttttccagaaaaaatcagaaacctcgaccatcatcagtaaatggaaaattctttactctttccatcatcattcatcaacaataacaacatcataatcacc 330  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  1009470 tttttcagaaaaattcagaaacctcgaccatcatcagtaaatggaaaattctttactctttccatcatcattcatcaacaacaacaacatcatcatcacc 1009569  T
Q  331 attaatttctatcaataac 349  Q
    |||||||||||||||||||    
T  1009570 attaatttctatcaataac 1009588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 231 - 349
Target Start/End: Complemental strand, 8523579 - 8523461
Alignment:
Q  231 ttttccagaaaaaatcagaaacctcgaccatcatcagtaaatggaaaattctttactctttccatcatcattcatcaacaataacaacatcataatcacc 330  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  8523579 ttttccagaaaaattcaaaaacctcgaccatcatcagtaaatggaaaattctttactctttccatcatcattcatcaacaacaacaacatcatcatcacc 8523480  T
Q  331 attaatttctatcaataac 349  Q
    |||||||||||||||||||    
T  8523479 attaatttctatcaataac 8523461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 1010424 - 1010290
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaac 99  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| |||||||||||||||    ||||| ||||||||||||||    
T  1010424 ctaataaaactcatgttttggtccctcacgtttgtctccgtcagtcaaataaatcccgacggttaactttaacccca---aatgtgtatggtggaccaac 1010328  T
Q  100 cttaagagtggtccaccatagatcatattaattattta 137  Q
    |||||||||||||| ||||||||| |||||||||||||    
T  1010327 cttaagagtggtccgccatagatcctattaattattta 1010290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 8521311 - 8521445
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaac 99  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||| |||||||||||||||    ||||| ||||||||||||||    
T  8521311 ctaataaaactcatgttttggtccctcacgtttgtctccgtcagtcaaataaatcccgacggttaactttaacccca---aatgtgtatggtggaccaac 8521407  T
Q  100 cttaagagtggtccaccatagatcatattaattattta 137  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  8521408 cttaagaatggtccaccatagatcctattaattattta 8521445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 11262508 - 11262582
Alignment:
Q  61 agttaactttaaccccccagaatgttatggtggaccaaccttaagagtggtccaccatagatcatattaattatt 135  Q
    ||||||||| ||||||  |  ||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11262508 agttaacttcaaccccaaatcatgctatggtggaccaaccttaagagtggtccaccatagatcctattaattatt 11262582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 1102729 - 1102808
Alignment:
Q  55 cctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||| |||||||||||||||    ||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  1102729 cctgactgttaactttaacccca---aatgtctatggtagaccaaccttaagagtggtccaccatagatcttattaattattt 1102808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 30910885 - 30910933
Alignment:
Q  88 tggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  30910885 tggtggaccaaccttaagagtggtccaccatagatcctattaattattt 30910933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 30859187 - 30859096
Alignment:
Q  46 caaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||| || |||| ||||| |||||||||  |  |||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  30859187 caaataagtcttgaccgttaagtttaaccccaaatgatgtctatggtggaccaatcttaagagtggtccaccatagatcctattaattattt 30859096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 39603954 - 39604045
Alignment:
Q  46 caaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||| |||| ||||| |||||||||  |  |||| |||||| |||||||||||| |||| ||||||||||||| ||||||||||||    
T  39603954 caaataaatcatgactgttaagtttaaccccaaatgatgtctatggtagaccaaccttaaaagtgatccaccatagatcctattaattattt 39604045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 27705291 - 27705246
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaat 131  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||    
T  27705291 tatggtggaccaaccttaaaagtggtccaccatagatcctattaat 27705246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 22047789 - 22047924
Alignment:
Q  2 taataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaacc 100  Q
    |||||||||  | |||||||||| |||| |||  ||||||  | ||||||||||||| | ||||| |||||| |   |  |||| ||||||||| |||||    
T  22047789 taataaaacgtacgttttggtccctcattttttcctccgtttgccaaataaatcctggctgttaagtttaactctaaatgatgtctatggtggatcaacc 22047888  T
Q  101 ttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||||||||||||||| ||| ||| ||||||||    
T  22047889 ttaagagtggtccaccataaatcctatgaattattt 22047924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 10735903 - 10735953
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||||||| |||| ||  |||||||||||||||||||||||||||    
T  10735903 tatggtggaccaacgttaacagcagtccaccatagatcatattaattattt 10735953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 22308775 - 22308740
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccataga 121  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22308775 tatggtggacctaccttaagagtggtccaccataga 22308740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 32759107 - 32759052
Alignment:
Q  2 taataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcct 57  Q
    ||||||||||||||||||||||| ||| |||   ||||||| ||||||||||||||    
T  32759107 taataaaactcatgttttggtccctcaagttcacctccgtcggtcaaataaatcct 32759052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 33173936 - 33173901
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccataga 121  Q
    ||||||||||||||||||||||||||| ||||||||    
T  33173936 tatggtggaccaaccttaagagtggtctaccataga 33173901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 15548381 - 15548426
Alignment:
Q  88 tggtggaccaaccttaagagtggtccaccatagatcatattaatta 133  Q
    ||||||||||||||||||| || ||||||||| ||| |||||||||    
T  15548381 tggtggaccaaccttaagaatgatccaccataaatcctattaatta 15548426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 42878866 - 42878755
Alignment:
Q  26 tcatgtttgtctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgttatggtggaccaaccttaagagtggtccaccatagatcat 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |    
T  42878866 tcatgtttgtctccgtcagtcaaataaatcctgacagttaactttaaccccccaaaatgttatggtggaccaaccttaagtgtggtccaccatagatcct 42878767  T
Q  126 attaattattta 137  Q
    ||||||||||||    
T  42878766 attaattattta 42878755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 238 - 349
Target Start/End: Complemental strand, 42878656 - 42878545
Alignment:
Q  238 gaaaaaatcagaaacctcgaccatcatcagtaaatggaaaattctttactctttccatcatcattcatcaacaataacaacatcataatcaccattaatt 337  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||    
T  42878656 gaaaaattcagaaacctcgaccatcatcagtaaatggaaaattctttactctttccatcatccttcatcaacaacaacaacatcatcatcaccattaatt 42878557  T
Q  338 tctatcaataac 349  Q
    ||||||||||||    
T  42878556 tctatcaataac 42878545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 42877675 - 42877809
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaac 99  Q
    |||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| ||| |||||||||||||||    ||||| ||||||||||||||    
T  42877675 ctaataaaactcatgttttggtccctcacgtttgtcttcgtcagtcaaataaatcccgacggttaactttaacccca---aatgtgtatggtggaccaac 42877771  T
Q  100 cttaagagtggtccaccatagatcatattaattattta 137  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  42877772 cttaagaatggtccaccatagatcctattaattattta 42877809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 9854904 - 9854809
Alignment:
Q  36 ctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaatt 132  Q
    |||||||||||||| |  ||||||| |||||||||||||||| |  |||| |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  9854904 ctccgtcagtcaaaaaggtcctgaccgttaactttaacccccaa--atgtctatggtggaccaactttaagagtggtccaccatagatcctattaatt 9854809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 24192639 - 24192589
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24192639 tatggtggaccaaccttaagagtggtccaccatagatcctattaattattt 24192589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 42872206 - 42872115
Alignment:
Q  44 gtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattattta 137  Q
    ||||||||||||||||| ||||||||||||| |    ||||| |||||| |||||||||||||||||||| |||||||||| |||||||| ||||    
T  42872206 gtcaaataaatcctgacggttaactttaacctca---aatgtctatggtagaccaaccttaagagtggtctaccatagatcctattaatttttta 42872115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 38696364 - 38696494
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaat-cctgacagttaactttaaccccccagaatgt-tatggtggaccaa 98  Q
    |||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||| |||  |  |||| |||||   |||  ||||| |||||| ||||||    
T  38696364 ctaataaaactcatgttttggtccctcaagtttgcctccgtcggtcaaataaatcccttgctattaagtttaa---ccctaaatgtctatggtagaccaa 38696460  T
Q  99 ccttaagagtggtccaccatagatcatattaatt 132  Q
    |||||| ||||||||||||||||||  |||||||    
T  38696461 ccttaaaagtggtccaccatagatctaattaatt 38696494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 32798507 - 32798457
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  32798507 tatggtggatcaaccttaagagtggtccaccatagatcctattaattattt 32798457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 42098648 - 42098751
Alignment:
Q  30 gtttgtctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatatt 128  Q
    ||||||||||||  | ||||||||||| ||| ||||| |||||||||  |  |||| | ||||||||||||||||| |||||||||||||||||| ||||    
T  42098648 gtttgtctccgtttgccaaataaatcc-gactgttaattttaaccccaaatgatgtctttggtggaccaaccttaaaagtggtccaccatagatcctatt 42098746  T
Q  129 aatta 133  Q
    |||||    
T  42098747 aatta 42098751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 45437541 - 45437466
Alignment:
Q  2 taataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaat-cctgacagttaactttaacccc 76  Q
    ||||||||||||||||||||||| || |||||| |||||  |||||||||||| |||||| ||||| |||||||||    
T  45437541 taataaaactcatgttttggtccctcgtgtttgcctccgctagtcaaataaatccctgactgttaagtttaacccc 45437466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 10669421 - 10669371
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||| |||||||||||||||||||||||||||||| |||||| |||||    
T  10669421 tatggtgaaccaaccttaagagtggtccaccatagatcctattaaatattt 10669371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 32695282 - 32695199
Alignment:
Q  54 tcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||| ||||| |||||||||  |  |||| ||||||| ||||| ||||||| |||||||||||||||| ||||||||||||    
T  32695282 tcctgaccgttaagtttaaccccaaatgatgtctatggtgaaccaatcttaagattggtccaccatagatcctattaattattt 32695199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 43202240 - 43202287
Alignment:
Q  90 gtggaccaaccttaagagtggtccaccatagatcatattaattattta 137  Q
    ||||| |||||||||||||||||||||||||||| ||||| |||||||    
T  43202240 gtggatcaaccttaagagtggtccaccatagatcctattagttattta 43202287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 131
Target Start/End: Original strand, 4810526 - 4810651
Alignment:
Q  2 taataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaacc 100  Q
    |||||||||  |||||||||||| |||  ||| |||||||  | ||||||||||| ||| |||||||||||||||  |  |||| |||||||||          
T  4810526 taataaaacgtatgttttggtccttcaaatttttctccgtttgccaaataaatcccgacggttaactttaaccccaaatgatgtctatggtgga-----a 4810620  T
Q  101 ttaagagtggtccaccatagatcatattaat 131  Q
    ||||||||||||||||||||||| |||||||    
T  4810621 ttaagagtggtccaccatagatcctattaat 4810651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 14840959 - 14840905
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatc 55  Q
    ||||||||| |||||||||||||| |||| ||||||||||||  |||||||||||    
T  14840959 ctaataaaattcatgttttggtccctcatatttgtctccgtctatcaaataaatc 14840905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 20180646 - 20180600
Alignment:
Q  90 gtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||| ||| ||||||||||||||||||||||| ||||||||||||    
T  20180646 gtggactaacattaagagtggtccaccatagatcctattaattattt 20180600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 17455194 - 17455237
Alignment:
Q  93 gaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||| ||||| |||||||||||||||||| ||||||||||||    
T  17455194 gaccaatcttaaaagtggtccaccatagatcttattaattattt 17455237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 40437565 - 40437522
Alignment:
Q  93 gaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||||| ||||||||||| |||||| ||||||||||||    
T  40437565 gaccaaccttaaaagtggtccaccgtagatcctattaattattt 40437522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 42362726 - 42362675
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattta 137  Q
    |||||||||||||| ||||||||||| || |||||||| |||||||| ||||    
T  42362726 tatggtggaccaacattaagagtggttcatcatagatcctattaatttttta 42362675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 13117604 - 13117558
Alignment:
Q  90 gtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||| |||| ||||||||| |||||||| ||||||||||||    
T  13117604 gtggaccaactttaaaagtggtccatcatagatcctattaattattt 13117558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 31845770 - 31845721
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||| |||||| |||||||||||||||||||| || ||||||||||||    
T  31845770 tatggtgaaccaac-ttaagagtggtccaccataggtcctattaattattt 31845721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 38697066 - 38697012
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatc 55  Q
    |||||||||||||||||||| ||| |||  |||| ||||||| ||||||||||||    
T  38697066 ctaataaaactcatgttttgatccttcacatttgcctccgtcggtcaaataaatc 38697012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 45281161 - 45281119
Alignment:
Q  89 ggtggaccaaccttaagagtggtccaccatagatcatattaat 131  Q
    |||||||||||||||||||||||| |||||| ||| |||||||    
T  45281161 ggtggaccaaccttaagagtggtctaccataaatcctattaat 45281119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 127489 - 127618
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaat-cctgacagttaactttaaccccccagaatgt-tatggtggaccaa 98  Q
    |||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| |||||||||||||||||||| |    ||||| ||||||| | |||    
T  127489 ctaataaaactcatgttttggtccctcatgtttgcctccgtcggtcaaataaatccctgacagttaactttaacctc---aaatgtctatggtgaaacaa 127585  T
Q  99 ccttaagagtggtccaccatagatcatattaat 131  Q
    ||||||||||||||||||||||||| |||||||    
T  127586 ccttaagagtggtccaccatagatcctattaat 127618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 128651 - 128595
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcct 57  Q
    |||||||||||||||||||||||| | |  |||||||||||| |||||| |||||||    
T  128651 ctaataaaactcatgttttggtcccttaaatttgtctccgtcggtcaaaaaaatcct 128595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 40723284 - 40723418
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaac 99  Q
    |||||||||||||||||||||||| | | |||| |||||||| |||||||||||||  || ||||| ||||||| |    ||||| ||||||||||||||    
T  40723284 ctaataaaactcatgttttggtcccttaggtttatctccgtcggtcaaataaatccatactgttaagtttaacctca---aatgtatatggtggaccaac 40723380  T
Q  100 cttaagagtggtccaccatagatcatattaattattta 137  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  40723381 cttaagagtggtctaccatagatcctattaattattta 40723418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 13533320 - 13533248
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcctgacagttaactttaac 73  Q
    |||| ||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||| ||||| ||||||    
T  13533320 ctaaaaaaactcatgttttggtccctcacgtttgtctccgtcggtcaaataaatccagactgttaaatttaac 13533248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 2312497 - 2312406
Alignment:
Q  46 caaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||| |||| ||||| |||||||||  |  |||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||    
T  2312497 caaataaatcatgaccgttaagtttaaccccaaatgatgtctatggtggaccaatcttaaaagtggtccaccatagatcctattaattattt 2312406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 7707689 - 7707780
Alignment:
Q  46 caaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||||||||||| |||| ||||||| ||  |  |||| | |||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  7707689 caaataaatcctgacggttagctttaacaccaaatgatgtctttggtagaccaaccttaagagtggtccaccatagatcctattaattattt 7707780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 136
Target Start/End: Original strand, 4871585 - 4871684
Alignment:
Q  36 ctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattat 134  Q
    |||||| | ||||| | |||||||| |||||||||||||| | |  |||| |||||||||||||||| |||||||||||||| |||||| ||||||||||    
T  4871585 ctccgttattcaaaaagatcctgaccgttaactttaaccctcaa--atgtctatggtggaccaacctaaagagtggtccaccgtagatcctattaattat 4871682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 27850913 - 27850863
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  27850913 tatggtggaccaaccttaaaagtggtccaccatagatcctattaattattt 27850863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 44498601 - 44498651
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  44498601 tatggtggatcaaccttaagagtggtccaccatagatcctattaattattt 44498651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 56085487 - 56085537
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  56085487 tatggtggactaaccttaagagtggtccaccatagatcctattaattattt 56085537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 52240018 - 52240063
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaat 131  Q
    |||||||||||||||||||||||||||||||||||||| |||||||    
T  52240018 tatggtggaccaaccttaagagtggtccaccatagatcctattaat 52240063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 1794510 - 1794597
Alignment:
Q  44 gtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaa 130  Q
    |||||||||||||| || ||||| ||||| |||  |  |||| |||||||||||||||||||||||||||||||||||| | ||||||    
T  1794510 gtcaaataaatcctaacggttaagtttaatcccaaatgatgtatatggtggaccaaccttaagagtggtccaccatagaccttattaa 1794597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 40724904 - 40724849
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcc 56  Q
    |||||||||||||||||||||||| | | |||||||||||| ||||||||||||||    
T  40724904 ctaataaaactcatgttttggtcccttaagtttgtctccgttagtcaaataaatcc 40724849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 11968652 - 11968702
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||||||||    
T  11968652 tatgatggaccaaccttaagagtggtccatcatagatcctattaattattt 11968702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 15450046 - 15450005
Alignment:
Q  90 gtggaccaaccttaagagtggtccaccatagatcatattaat 131  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  15450046 gtggaccaaccttaagagtggtccaccatagatcctattaat 15450005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 135
Target Start/End: Complemental strand, 26496334 - 26496236
Alignment:
Q  36 ctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattat 134  Q
    |||||||||||||| |  |||| || |||||||||||||||| |  |||| ||||||||||| || |||| | |||||||||||||||| ||||||||||    
T  26496334 ctccgtcagtcaaaaaggtcctaactgttaactttaacccccaa--atgtctatggtggaccgactttaaaaatggtccaccatagatcctattaattat 26496237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 13165635 - 13165670
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccataga 121  Q
    ||||||||||||||||||||||||||||||||||||    
T  13165635 tatggtggaccaaccttaagagtggtccaccataga 13165670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 52963637 - 52963743
Alignment:
Q  13 atgttttggtccatcatgtttgtctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggt 111  Q
    |||||||||||| ||| |||| |||||||  ||||||||||||  ||| |||||||||||| ||    ||||| |||||||||||| |||||| ||||||    
T  52963637 atgttttggtccctcaagtttttctccgtttgtcaaataaatctcgactgttaactttaactcc---aaatgtctatggtggaccagccttaaaagtggt 52963733  T
Q  112 ccaccataga 121  Q
    ||| ||||||    
T  52963734 ccatcataga 52963743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 34326868 - 34326918
Alignment:
Q  87 atggtggaccaaccttaagagtggtccaccatagatcatattaattattta 137  Q
    ||||||||||||| |||||||||||| || ||||||| |||||||||||||    
T  34326868 atggtggaccaactttaagagtggtctactatagatcctattaattattta 34326918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 53432119 - 53432248
Alignment:
Q  2 taataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaat-cctgacagttaactttaaccccccagaatgt-tatggtggaccaac 99  Q
    |||||||||| |||||||||||| ||| ||||| || |||  ||||||||||| |||||| ||||| |||||||||    ||||| ||||||| ||||||    
T  53432119 taataaaacttatgttttggtccctcaagtttgccttcgttggtcaaataaatccctgacggttaagtttaacccc---aaatgtctatggtgaaccaac 53432215  T
Q  100 cttaagagtggtccaccatagatcatattaatt 132  Q
     ||||||||||  ||||||| | | ||||||||    
T  53432216 tttaagagtggctcaccatacaccttattaatt 53432248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 6348294 - 6348339
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaat 131  Q
    ||||||||||||||||||||||||||||||| |||| | |||||||    
T  6348294 tatggtggaccaaccttaagagtggtccaccgtagaccttattaat 6348339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 6349527 - 6349486
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatat 127  Q
    ||||||||| |||||||||||||||||||||||||| |||||    
T  6349527 tatggtggatcaaccttaagagtggtccaccatagaccatat 6349486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 52138769 - 52138720
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattatt 135  Q
    |||||| ||||||| |||||| |||||||||||||||| |||||||||||    
T  52138769 tatggtagaccaactttaagaatggtccaccatagatcctattaattatt 52138720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 302 - 349
Target Start/End: Complemental strand, 1520970 - 1520923
Alignment:
Q  302 tcatcaacaataacaacatcataatcaccattaatttctatcaataac 349  Q
    ||||||||||||||||||||||  |||||||| |||||| ||||||||    
T  1520970 tcatcaacaataacaacatcatcgtcaccattgatttctgtcaataac 1520923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 4714160 - 4714195
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccataga 121  Q
    ||||||||| ||||||||||||||||||||||||||    
T  4714160 tatggtggatcaaccttaagagtggtccaccataga 4714195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 26629930 - 26629980
Alignment:
Q  85 ttatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||| |||||| |||||||||||||||||||| || ||||||||||||    
T  26629930 ttatggtgaaccaac-ttaagagtggtccaccataggtcctattaattattt 26629980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 36845557 - 36845600
Alignment:
Q  93 gaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||| |||||||||||||||||||| || ||||||||||||    
T  36845557 gaccaacattaagagtggtccaccataggtcctattaattattt 36845600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 53435812 - 53435694
Alignment:
Q  2 taataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcc-tgacagttaactttaaccccccagaatgt-tatggtggaccaac 99  Q
    |||||||||||||||||||| || ||| ||||  ||||||  ||||||||||||| |||| ||||| |||||   |    ||||| |||||| |||||||    
T  53435812 taataaaactcatgttttggcccctcaagtttacctccgttggtcaaataaatccttgacggttaagtttaa---ctttaaatgtctatggtagaccaac 53435716  T
Q  100 cttaagagtggtccaccataga 121  Q
    ||||||||||||||||| ||||    
T  53435715 cttaagagtggtccaccgtaga 53435694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 7053321 - 7053363
Alignment:
Q  90 gtggaccaaccttaagagtggtccaccatagatcatattaatt 132  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||    
T  7053321 gtggaccaatcttaagagtgatccaccatagatcctattaatt 7053363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 19750270 - 19750220
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||| || ||||| ||| |||||||||||||| ||||||||||||    
T  19750270 tatggtggacaaatcttaaaagttgtccaccatagatcctattaattattt 19750220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 19789536 - 19789586
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||| || ||||| ||| |||||||||||||| ||||||||||||    
T  19789536 tatggtggacaaatcttaaaagttgtccaccatagatcctattaattattt 19789586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 49896560 - 49896510
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||||||||| |||||||||||||  |||||| | ||||||||||    
T  49896560 tatggtggaccaacctaaagagtggtccactgtagatcctgttaattattt 49896510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 56157468 - 56157426
Alignment:
Q  90 gtggaccaaccttaagagtggtccaccatagatcatattaatt 132  Q
    ||||||||| |||||||||| ||||||||||||| ||||||||    
T  56157468 gtggaccaatcttaagagtgttccaccatagatcctattaatt 56157426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 8682809 - 8682772
Alignment:
Q  100 cttaagagtggtccaccatagatcatattaattattta 137  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  8682809 cttaagagtggtccatcatagatcatattaatttttta 8682772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 48097091 - 48096957
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaac 99  Q
    ||||||||||||||||||| |||| | | ||||||||||||| |||||||||||||  || ||||| ||||||| |    ||||| ||||||||||||||    
T  48097091 ctaataaaactcatgttttagtcccttaggtttgtctccgtcggtcaaataaatccctactgttaagtttaacctca---aatgtatatggtggaccaac 48096995  T
Q  100 cttaagagtggtccaccatagatcatattaattattta 137  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  48096994 cttaagagtggtctaccatagatcctattaattattta 48096957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 13147392 - 13147342
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  13147392 tatggtggaccaaccttaatagtggtccaccatagatcctattaattattt 13147342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 16965101 - 16965051
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  16965101 tatggtggaccaactttaagagtggtccaccatagatcctattaattattt 16965051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 131
Target Start/End: Complemental strand, 15746825 - 15746697
Alignment:
Q  2 taataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcctg-acagttaactttaaccccccagaatgt-tatggtggaccaac 99  Q
    ||||||||||||||||||||||| | |  | | ||||||||||||||||||||| |  || ||||| ||||||  |    ||||| |||||||||||||     
T  15746825 taataaaactcatgttttggtcccttaattgtatctccgtcagtcaaataaatcatccactgttaagtttaacttca---aatgtctatggtggaccaat 15746729  T
Q  100 cttaagagtggtccaccatagatcatattaat 131  Q
    |||||||||||||||||||||||| |||||||    
T  15746728 cttaagagtggtccaccatagatcctattaat 15746697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 45585024 - 45584933
Alignment:
Q  46 caaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||||||||||| ||||| ||||| |||  |  |||| |||||||| ||||| ||||||||| ||||||||||||| ||||||||||||    
T  45585024 caaataaatcctgaccgttaagtttaaacccaaatgatgtctatggtggcccaactttaagagtgctccaccatagatcctattaattattt 45584933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 3617473 - 3617423
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||||||||||    
T  3617473 tatggtgaaccaaccttaagagtggtccactatagatcctattaattattt 3617423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 9226191 - 9226141
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||||| ||||||||| |||||||||||||||||| ||||||||||||    
T  9226191 tatggtggatcaaccttaaaagtggtccaccatagatcctattaattattt 9226141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 121
Target Start/End: Complemental strand, 41873947 - 41873912
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccataga 121  Q
    ||||||||||||||||||||||||||||||||||||    
T  41873947 tatggtggaccaaccttaagagtggtccaccataga 41873912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 9482599 - 9482645
Alignment:
Q  90 gtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  9482599 gtggaccaactttaagagtggttcaccatagatcttattaattattt 9482645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 44999438 - 44999388
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||||||||| | |||||||||| ||||||||||| ||||||||||||    
T  44999438 tatggtggaccaatcgtaagagtggttcaccatagatcttattaattattt 44999388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 48527674 - 48527724
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||| ||||||| ||||||||||||||||||||||| ||| ||||||||    
T  48527674 tatggtcgaccaactttaagagtggtccaccatagatcttatcaattattt 48527724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 52078120 - 52078070
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||| |||||||||||||||| | ||||||||||| ||||||||||||    
T  52078120 tatggtgaaccaaccttaagagtgatacaccatagatcctattaattattt 52078070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 14478357 - 14478455
Alignment:
Q  36 ctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattat 134  Q
    |||||||||||||| |  |||| ||  ||||||||||||||| |  |||| ||||||||||| || |||| | |||||||||||||||| ||||||||||    
T  14478357 ctccgtcagtcaaaaaggtcctaactattaactttaacccccaa--atgtctatggtggaccgactttaaaaatggtccaccatagatcctattaattat 14478454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 34350253 - 34350294
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatat 127  Q
    ||||||||| |||||||||||||||||||||||||| |||||    
T  34350253 tatggtggatcaaccttaagagtggtccaccatagaccatat 34350294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 135
Target Start/End: Original strand, 51445685 - 51445779
Alignment:
Q  40 gtcagtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattatt 135  Q
    |||||||||| |  |||| || |||||||||||||||| |  |||| ||||||||| |||| |||| | |||||||||||||||| |||||||||||    
T  51445685 gtcagtcaaaaaggtcctaactgttaactttaacccccaa--atgtctatggtggatcaactttaaaaatggtccaccatagatcctattaattatt 51445779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 35943423 - 35943379
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaa 130  Q
    |||||||||||||||||||||||| ||||||||||| | ||||||    
T  35943423 tatggtggaccaaccttaagagtgatccaccatagaccttattaa 35943379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 18821715 - 18821664
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattta 137  Q
    |||||||||| |||||||||||||||| |||| ||||| |||||||| ||||    
T  18821715 tatggtggactaaccttaagagtggtctaccaaagatcctattaatttttta 18821664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 26802083 - 26802130
Alignment:
Q  89 ggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||| ||||||||||||||| |||||| ||||||||||||||| ||||    
T  26802083 ggtgaaccaaccttaagagttgtccactatagatcatattaatcattt 26802130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 46467202 - 46467257
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcc 56  Q
    |||||||||||||||||| ||||| ||| ||||| ||||||  |||||||||||||    
T  46467202 ctaataaaactcatgtttcggtccctcaggtttgcctccgtttgtcaaataaatcc 46467257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 46468779 - 46468724
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcc 56  Q
    |||||||||||||||||| ||||||||| ||||| ||| ||  |||||||||||||    
T  46468779 ctaataaaactcatgtttcggtccatcaagtttgcctctgtttgtcaaataaatcc 46468724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 15232897 - 15232943
Alignment:
Q  90 gtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||| |||| ||||||||| |||||||| ||||||||||||    
T  15232897 gtggaccaactttaaaagtggtccatcatagatcctattaattattt 15232943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 46110421 - 46110467
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaatt 132  Q
    ||||||||||||||||||||||||||||| | |||| | ||||||||    
T  46110421 tatggtggaccaaccttaagagtggtccatcgtagaccttattaatt 46110467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 7161418 - 7161366
Alignment:
Q  2 taataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatc 55  Q
    |||||||| |||||||||||||| ||| ||||| ||||||| ||||||||||||    
T  7161418 taataaaattcatgttttggtccctcaggtttgcctccgtc-gtcaaataaatc 7161366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 119
Target Start/End: Original strand, 14471000 - 14471029
Alignment:
Q  90 gtggaccaaccttaagagtggtccaccata 119  Q
    ||||||||||||||||||||||||||||||    
T  14471000 gtggaccaaccttaagagtggtccaccata 14471029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 12665944 - 12665976
Alignment:
Q  100 cttaagagtggtccaccatagatcatattaatt 132  Q
    |||||||||||||||||||||||| ||||||||    
T  12665944 cttaagagtggtccaccatagatcttattaatt 12665976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 46318677 - 46318621
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcct 57  Q
    ||||||||| |||||||||||||| |||  | | |||||||| ||||||||||||||    
T  46318677 ctaataaaagtcatgttttggtccctcaattgtatctccgtctgtcaaataaatcct 46318621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 32255090 - 32255181
Alignment:
Q  46 caaataaatcctgacagttaactttaaccccccagaatgtt-atggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||||||| ||| ||||| |||||||||  |  ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32255090 caaataaatcccgacggttaagtttaaccccaaatgatgtttatggtggaccaaccttaagagtggtccaccatagatcctattaattattt 32255181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 46201271 - 46201321
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46201271 tatggtgaaccaaccttaagagtggtccaccatagatcatattaattattt 46201321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 9662296 - 9662224
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcctgacagttaactttaac 73  Q
    |||| ||||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||| ||||| ||||||    
T  9662296 ctaaaaaaactcatgttttggtccctcacgtttgtctccgtcggtcaaataaatccagactgttaaatttaac 9662224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 35295841 - 35295889
Alignment:
Q  88 tggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35295841 tggtggaccaaccttaagagtggtccaccatagatcctattaattattt 35295889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 13564254 - 13564164
Alignment:
Q  46 caaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||||||| ||| ||||| |||||||||  | ||||| ||||||||| || ||||||||||||||||||||||||| ||||||||||||    
T  13564254 caaataaatcccgac-gttaagtttaaccccaaataatgtctatggtggatcatccttaagagtggtccaccatagatcctattaattattt 13564164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 22336080 - 22336170
Alignment:
Q  46 caaataaatcctgacagttaactttaaccccccagaatgttatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||||||| ||  ||||| |||||||||  |  ||| ||||||||| ||||||||| |||||||||||||||||| ||||||||||||    
T  22336080 caaataaatcccgaatgttaagtttaaccccaaatgatgctatggtggatcaaccttaaaagtggtccaccatagatcctattaattattt 22336170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 43460798 - 43460748
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  43460798 tatggtggaccaactttaagagtggtccaccatagatcctattaattattt 43460748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 40811422 - 40811506
Alignment:
Q  47 aaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaat 131  Q
    |||||||||||||| ||||||||||||||    || ||| |||||||||||||||||||||||||||||||||||||  |||||||    
T  40811422 aaataaatcctgacggttaactttaacccaaatga-tgtctatggtggaccaaccttaagagtggtccaccatagattctattaat 40811506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 11502437 - 11502346
Alignment:
Q  46 caaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||||  |||||||| ||||||| |  |  |||| |||||| ||||||||||||||||||||||||||||||| || |||||||||    
T  11502437 caaataaatcccaacagttaagtttaacctcaaatgatgtctatggtagaccaaccttaagagtggtccaccatagatcctagtaattattt 11502346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 132
Target Start/End: Original strand, 47059209 - 47059295
Alignment:
Q  46 caaataaatcctgacagttaactttaaccccccagaatgttatggtggaccaaccttaagagtggtccaccatagatcatattaatt 132  Q
    ||||||||||||||| ||||| |||||||| ||| ||   ||||||||| ||||||||||||| | |||||||||| | ||||||||    
T  47059209 caaataaatcctgaccgttaagtttaaccctccaaaagtctatggtggagcaaccttaagagtagcccaccatagaccttattaatt 47059295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 135
Target Start/End: Original strand, 39981411 - 39981506
Alignment:
Q  39 cgtcagtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattatt 135  Q
    ||||||||||| |  |||| || |||||||||||||||| |  |||| |||||||||||||| |||| | ||||||||||||||||  ||||||||||    
T  39981411 cgtcagtcaaaaatgtcctaactgttaactttaacccccaa--atgtctatggtggaccaactttaaaaatggtccaccatagatccaattaattatt 39981506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 43441486 - 43441536
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||| ||||||||||||||||||||||||||  || ||||||||||||    
T  43441486 tatggtgtaccaaccttaagagtggtccaccataagtcctattaattattt 43441536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 44372873 - 44372919
Alignment:
Q  90 gtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||| ||| ||||||||||||||||||||||| ||||||||||||    
T  44372873 gtggactaacattaagagtggtccaccatagatcctattaattattt 44372919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 44381729 - 44381775
Alignment:
Q  90 gtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||| ||| ||||||||||||||||||||||| ||||||||||||    
T  44381729 gtggactaacattaagagtggtccaccatagatcctattaattattt 44381775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 2414890 - 2414931
Alignment:
Q  91 tggaccaaccttaagagtggtccaccatagatcatattaatt 132  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  2414890 tggaccaaccttaaaagtggtccaccatagatcctattaatt 2414931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 25533244 - 25533320
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatc-ctgacagttaactttaacccc 76  Q
    ||||||||| |||||||||||||| |||  | | |||||||| |||||||||||| ||||| ||||| |||||||||    
T  25533244 ctaataaaattcatgttttggtccttcaattgtatctccgtcggtcaaataaatctctgactgttaagtttaacccc 25533320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 121
Target Start/End: Complemental strand, 22115136 - 22115105
Alignment:
Q  90 gtggaccaaccttaagagtggtccaccataga 121  Q
    ||||||||||||||||||||||||||||||||    
T  22115136 gtggaccaaccttaagagtggtccaccataga 22115105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 22537703 - 22537750
Alignment:
Q  89 ggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||| ||||||||||| |||| ||||||||||||| ||||||||||||    
T  22537703 ggtgaaccaaccttaatagtgatccaccatagatcctattaattattt 22537750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 121
Target Start/End: Complemental strand, 40509706 - 40509675
Alignment:
Q  90 gtggaccaaccttaagagtggtccaccataga 121  Q
    ||||||||||||||||||||||||||||||||    
T  40509706 gtggaccaaccttaagagtggtccaccataga 40509675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 135
Target Start/End: Original strand, 41328336 - 41328408
Alignment:
Q  62 gttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattatt 135  Q
    |||||||||||||||| |  |||| ||||||||| |||| |||| | |||||||||||||||| |||||||||||    
T  41328336 gttaactttaacccccaa--atgtctatggtggaacaactttaaaaatggtccaccatagatcctattaattatt 41328408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 669364 - 669319
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaatt 132  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||    
T  669364 tatggtggaccatc-ttaagagtggtccaccatagatcctattaatt 669319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 15992275 - 15992325
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||||||||||||||||| |  |||| ||||| ||||||||||||    
T  15992275 tatggtggaccaaccttaagagtgatttaccaaagatcctattaattattt 15992325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 47060452 - 47060408
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaa 130  Q
    ||||||||||||||||||||| | |||||||||||| | ||||||    
T  47060452 tatggtggaccaaccttaagaatagtccaccatagaccttattaa 47060408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 108614 - 108703
Alignment:
Q  46 caaataaatcctgacagttaactttaaccccccagaatgttatggtggaccaaccttaagagtggtccaccatagatcatattaattatt 135  Q
    ||||||||||||  ||||||| |||||||||  | ||| |||||||||||||||||||| |||||||||||||||||  |||||||||||    
T  108614 caaataaatccttgcagttaagtttaaccccaaataatattatggtggaccaaccttaaaagtggtccaccatagatgctattaattatt 108703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 741 - 613
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaat-cctgacagttaactttaaccccccagaatgt-tatggtggaccaa 98  Q
    |||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||| |||||  || || ||||||| |    ||||| |||  ||||||||    
T  741 ctaataaaactcatgttttggtccctcaagtttgtctctgtcggtcaaataaatccctgattgtcaagtttaacctc---aaatgtatataatggaccaa 645  T
Q  99 ccttaagagtggtccaccatagatcatattaa 130  Q
    ||||||||||||||||||||||| | ||||||    
T  644 ccttaagagtggtccaccatagaccttattaa 613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 43590 - 43499
Alignment:
Q  46 caaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||| ||||||| ||||| |||||||||     |||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  43590 caaataagtcctgacggttaagtttaaccccaagtgatgtctatggtggaccaatcttaagagtggtccaccatagatcctattaattattt 43499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 54200 - 54109
Alignment:
Q  46 caaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||| |||| ||||| | |||||||  |  |||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  54200 caaataaatcgtgactgttaagtataaccccaaatgatgtctatggtggaccaaccttaaaagtggtccaccatagatcctattaattattt 54109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 32628 - 32753
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaac 99  Q
    |||||||||||| ||||||||| |  ||||||||||||| || | |||||||||||| || |||||||||||   ||   ||||| ||||||||||||||    
T  32628 ctaataaaactcgtgttttggtgcc-catgtttgtctccatcggccaaataaatcctaactgttaactttaa---ccttaaatgtctatggtggaccaac 32723  T
Q  100 cttaagagtggtccaccatagatcatatta 129  Q
    |||| |||||||||| |||||||| |||||    
T  32724 cttaggagtggtccatcatagatcctatta 32753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 12669863 - 12669906
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatatta 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12669863 tatggtggaccaaccttaagagtggtccaccatagatcatatta 12669906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 17837717 - 17837807
Alignment:
Q  46 caaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||||  |||||||| |||||||||  |  |||| |||||||||| ||| ||||||||||||||||||||||| ||||||||||||    
T  17837717 caaataaatcca-acagttaagtttaaccccaaatgatgtctatggtggacaaacattaagagtggtccaccatagatcctattaattattt 17837807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 7311700 - 7311650
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||| |||||||||||||||||||||||||| ||| ||||||||||||    
T  7311700 tatggtgaaccaaccttaagagtggtccaccataaatcctattaattattt 7311650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 23392315 - 23392405
Alignment:
Q  46 caaataaatcctgacagttaactttaaccccccagaatgttatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||||| |  ||||| |||||||||  |  ||| || |||||| ||||||||| |||||||||||||||||| ||||||||||||    
T  23392315 caaataaatcctaaatgttaagtttaaccccaaatgatgctaaggtggatcaaccttaaaagtggtccaccatagatcctattaattattt 23392405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 34093433 - 34093487
Alignment:
Q  3 aataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcct 57  Q
    |||||||||||||||||||||| ||| |||||| |||||| ||||||||||||||    
T  34093433 aataaaactcatgttttggtccctcaggtttgtttccgtcggtcaaataaatcct 34093487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 29381703 - 29381655
Alignment:
Q  88 tggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||||||||    
T  29381703 tggtggacaaaccttaagagtgatccaccatagatcctattaattattt 29381655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 11967360 - 11967406
Alignment:
Q  90 gtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||||    
T  11967360 gtggaccaaccttgagaggggtccatcatagatcatattaattattt 11967406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 11722877 - 11722975
Alignment:
Q  36 ctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattat 134  Q
    |||||||||||||| |  || | || |||||||||||||||| |  |||| ||||||||||| || |||| | |||||||||||||||| ||||||||||    
T  11722877 ctccgtcagtcaaaaaggtcataactgttaactttaacccccaa--atgtctatggtggaccgactttaaaaatggtccaccatagatcctattaattat 11722974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 134
Target Start/End: Complemental strand, 5187593 - 5187549
Alignment:
Q  90 gtggaccaaccttaagagtggtccaccatagatcatattaattat 134  Q
    ||||||||||||||| |||||| ||||||||||| ||||||||||    
T  5187593 gtggaccaaccttaaaagtggttcaccatagatcctattaattat 5187549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 18346722 - 18346675
Alignment:
Q  89 ggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||| |||||||||||||||||||||| ||| ||| ||||||||||||    
T  18346722 ggtgaaccaaccttaagagtggtccactataaatcctattaattattt 18346675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 119
Target Start/End: Complemental strand, 32507002 - 32506969
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccata 119  Q
    ||||||||||||||||||||||||||| ||||||    
T  32507002 tatggtggaccaaccttaagagtggtctaccata 32506969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 2 - 121
Target Start/End: Original strand, 34464025 - 34464143
Alignment:
Q  2 taataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatc-ctgacagttaactttaaccccccagaatgt-tatggtggaccaac 99  Q
    |||||||||  || ||||||||||||| ||||| |||||| | ||||||||||| ||||| ||||| |||||||||    ||||| ||| || |||||||    
T  34464025 taataaaacaaatcttttggtccatcaggtttgcctccgttaatcaaataaatctctgactgttaagtttaacccca---aatgtctatcgttgaccaac 34464121  T
Q  100 cttaagagtggtccaccataga 121  Q
    ||||||||||||||||||||||    
T  34464122 cttaagagtggtccaccataga 34464143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 34512871 - 34512985
Alignment:
Q  2 taataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaacc 100  Q
    ||||||||||||||||||| ||| |||  |||| |||||| ||||||||||||| |||| ||||| |||||    ||  ||||| ||||||||| |||||    
T  34512871 taataaaactcatgttttgatccctcaaatttgcctccgttagtcaaataaatcatgactgttaagtttaa----ccttaatgtatatggtggatcaacc 34512966  T
Q  101 ttaagagtggtccaccata 119  Q
     ||||||||||||||||||    
T  34512967 ataagagtggtccaccata 34512985  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 11547758 - 11547845
Alignment:
Q  44 gtcaaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaa 130  Q
    ||||||||||||||||| ||||| |||||||||  |  |||| |||  ||||||||||||| ||||||||||||||||||| ||||||    
T  11547758 gtcaaataaatcctgactgttaagtttaaccccaaatgatgtctatcatggaccaaccttaggagtggtccaccatagatcgtattaa 11547845  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 29219486 - 29219577
Alignment:
Q  46 caaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||||  || ||||| |||||||||  |  |||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||    
T  29219486 caaataaatcccaactgttaagtttaaccccaaatgatgtctatggtggaccaatcttaaaagtggtccaccatagatcctattaattattt 29219577  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 29332785 - 29332876
Alignment:
Q  46 caaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||||  || ||||| |||||||||  |  |||| ||||||||||||| ||||| |||||||||||||||||| ||||||||||||    
T  29332785 caaataaatcccaactgttaagtttaaccccaaatgatgtctatggtggaccaatcttaaaagtggtccaccatagatcctattaattattt 29332876  T

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Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 8320897 - 8320947
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||||| ||||||||| |||||||||||||| |||||||||||||    
T  8320897 tatggtggaccatccttaagagcggtccaccatagattatattaattattt 8320947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 11317343 - 11317293
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||| |||||||||||||||||||| |||||||||| ||||||||||||    
T  11317343 tatggtagaccaaccttaagagtggtctaccatagatcctattaattattt 11317293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 32469290 - 32469340
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||||||| ||||||||||||||| ||||||| ||||||||||||    
T  32469290 tatggtggaccaactttaagagtggtccactatagatcctattaattattt 32469340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 42641836 - 42641786
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||| |||||||||||||||||| |||||||||| ||||||||||||    
T  42641836 tatggtgggccaaccttaagagtggtctaccatagatcctattaattattt 42641786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 18616980 - 18616930
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||||||||  ||||| |||||||||||||||||| ||||||||||||    
T  18616980 tatggtggaccagtcttaaaagtggtccaccatagatcctattaattattt 18616930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 43033221 - 43033271
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||| ||||||||||||||||||||||||||| | | ||||||||||||    
T  43033221 tatggtagaccaaccttaagagtggtccaccataaaccctattaattattt 43033271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 43034446 - 43034400
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaatt 132  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||||||    
T  43034446 tatggtggatcaactttaagagtggtccaccatagatcctattaatt 43034400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 16295191 - 16295150
Alignment:
Q  88 tggtggaccaaccttaagagtggtccaccatagatcatatta 129  Q
    ||||||||||||||||| |||||||||||||||||| |||||    
T  16295191 tggtggaccaaccttaacagtggtccaccatagatcctatta 16295150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 30748621 - 30748669
Alignment:
Q  88 tggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||| || ||||||||||||||  ||||||||||||||||||||||||    
T  30748621 tggtgaacaaaccttaagagtggcacaccatagatcatattaattattt 30748669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 35903564 - 35903620
Alignment:
Q  1 ctaataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcct 57  Q
    ||||||||| |||||||||||||| |||  | | |||||||||||||||||||||||    
T  35903564 ctaataaaagtcatgttttggtccctcaattatatctccgtcagtcaaataaatcct 35903620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 1085364 - 1085313
Alignment:
Q  85 ttatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    |||||||||| || | ||||||||||| ||||||||||| ||||||||||||    
T  1085364 ttatggtggatcatctttaagagtggtacaccatagatcctattaattattt 1085313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 34147193 - 34147268
Alignment:
Q  2 taataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcc-tgacagttaactttaacccc 76  Q
    ||||||||||||||||||||||| ||| |||   ||||| ||||||||||||||| ||   |||||||||||||||    
T  34147193 taataaaactcatgttttggtccctcaagttcacctccgccagtcaaataaatccatgggtgttaactttaacccc 34147268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 34148419 - 34148364
Alignment:
Q  2 taataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcct 57  Q
    ||||||||||||||||||||||| ||| |||   ||||||| ||||||||||||||    
T  34148419 taataaaactcatgttttggtccctcaagttcacctccgtcggtcaaataaatcct 34148364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 131
Target Start/End: Complemental strand, 6030442 - 6030400
Alignment:
Q  89 ggtggaccaaccttaagagtggtccaccatagatcatattaat 131  Q
    ||||||||||||||||||||| || |||||||||| |||||||    
T  6030442 ggtggaccaaccttaagagtgatctaccatagatcctattaat 6030400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 132
Target Start/End: Complemental strand, 34513529 - 34513483
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaatt 132  Q
    |||||| ||||||||||||||||| ||||||||||| | ||||||||    
T  34513529 tatggttgaccaaccttaagagtgatccaccatagaccttattaatt 34513483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 35904802 - 35904748
Alignment:
Q  2 taataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcc 56  Q
    ||||||||||||||||||||||| | |  | ||||||||||||||||| ||||||    
T  35904802 taataaaactcatgttttggtcctttaattctgtctccgtcagtcaaaaaaatcc 35904748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 124108 - 124152
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaa 130  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  124108 tatggtggaccaaccttaagagtggtccaccatagatcgtattaa 124152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 125248 - 125163
Alignment:
Q  46 caaataaatcctgacagttaactttaaccccccagaatgt-tatggtggaccaaccttaagagtggtccaccatagatcatattaa 130  Q
    |||||||||||| || ||||| |||||||||  |  |||| |||| |||||||||||||| |||||||||||||||| | ||||||    
T  125248 caaataaatcctaacggttaagtttaaccccaaatgatgtatatgatggaccaaccttaaaagtggtccaccatagaccttattaa 125163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 8767 - 8821
Alignment:
Q  3 aataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatcct 57  Q
    |||||||||||||||||||||| ||| |||||| |||||| ||||||||||||||    
T  8767 aataaaactcatgttttggtccctcaggtttgtttccgtcggtcaaataaatcct 8821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 22045 - 22098
Alignment:
Q  2 taataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaatc 55  Q
    ||||||||||||||||||||||| | | ||||| |||| |||||||||||||||    
T  22045 taataaaactcatgttttggtcccttaggtttgcctccttcagtcaaataaatc 22098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 121
Target Start/End: Original strand, 21267 - 21302
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccataga 121  Q
    ||||||||||||||||| ||||||||||||||||||    
T  21267 tatggtggaccaaccttcagagtggtccaccataga 21302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 8166 - 8117
Alignment:
Q  86 tatggtggaccaaccttaagagtggtccaccatagatcatattaattattt 136  Q
    ||||||||| |||||||||||| |||||| ||||||| |||||||||||||    
T  8166 tatggtggatcaaccttaagag-ggtccatcatagattatattaattattt 8117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 1144 - 1092
Alignment:
Q  2 taataaaactcatgttttggtccatcatgtttgtctccgtcagtcaaataaat 54  Q
    ||||||||||||||||||||||| |||  ||   |||||||||||||||||||    
T  1144 taataaaactcatgttttggtccctcaaattcacctccgtcagtcaaataaat 1092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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