View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9458_low_4 (Length: 347)
Name: NF9458_low_4
Description: NF9458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9458_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 201 - 341
Target Start/End: Original strand, 46677655 - 46677795
Alignment:
| Q |
201 |
gtgatgatcaatgttctaggctttagtagccgtgaatgaagtaacgacgcagataatcaatgagaatgatgacttctatgccatcaagcccatggagtat |
300 |
Q |
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| T |
46677655 |
gtgatgatcaatgttctaggctttagtagccgtgaatgaagtaacgacgcagataatcaatgagaataatgacttctatgccatcaagcccatggagtat |
46677754 |
T |
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| Q |
301 |
agccgttttctaataatctcattgggcaccggaacaccaaa |
341 |
Q |
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| T |
46677755 |
agccgttttctaataatctcattgggcaccggaacaccaaa |
46677795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 46677462 - 46677587
Alignment:
| Q |
6 |
atcttcctggttacaacttcaagaaccaagatacagaaggcaacgtacgtgagttcaacctcattgatggtggtgtttgtgcaaataatccggtaaataa |
105 |
Q |
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| T |
46677462 |
atcttcctggttacaacttcaagaaccaagatacagaaggcaacgtacgtgagttcaacctcattgatggtggtgtttgtgcaaataatccggtaaataa |
46677561 |
T |
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| Q |
106 |
ttatataataaaagttacatacaaag |
131 |
Q |
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| T |
46677562 |
ttatataataaaagttacatacaaag |
46677587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 100
Target Start/End: Original strand, 46681439 - 46681533
Alignment:
| Q |
6 |
atcttcctggttacaacttcaagaaccaagatacagaaggcaacgtacgtgagttcaacctcattgatggtggtgtttgtgcaaataatccggta |
100 |
Q |
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| T |
46681439 |
atcttccaggttacaatttcaagaaccaagatacagaaggcaacacacatgaattcaaccttattgatggaggtgtttgtgcaaataatccggta |
46681533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 233 - 326
Target Start/End: Original strand, 46681635 - 46681728
Alignment:
| Q |
233 |
tgaatgaagtaacgacgcagataatcaatgagaatgatgacttctatgccatcaagcccatggagtatagccgttttctaataatctcattggg |
326 |
Q |
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| T |
46681635 |
tgaatgaagtaacaaatcagataattaatcagaataatgacttctatgccatcaagccaatggaatatagccgtttcttgataatctcactggg |
46681728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 6090239 - 6090195
Alignment:
| Q |
56 |
gagttcaacctcattgatggtggtgtttgtgcaaataatccggta |
100 |
Q |
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| T |
6090239 |
gagttcaatctcattgatggtggtgtttgtgcaaataatccggta |
6090195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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