View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9458_low_5 (Length: 271)

Name: NF9458_low_5
Description: NF9458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9458_low_5
NF9458_low_5
[»] chr3 (5 HSPs)
chr3 (63-170)||(3455874-3455981)
chr3 (63-145)||(54362015-54362097)
chr3 (63-115)||(9762752-9762804)
chr3 (63-108)||(20354710-20354755)
chr3 (63-126)||(9775963-9776026)
[»] chr2 (3 HSPs)
chr2 (63-145)||(929010-929092)
chr2 (63-149)||(15215483-15215569)
chr2 (64-145)||(34504161-34504242)
[»] chr1 (3 HSPs)
chr1 (66-126)||(49044698-49044758)
chr1 (63-149)||(3150632-3150718)
chr1 (63-123)||(32543968-32544028)
[»] chr5 (2 HSPs)
chr5 (74-145)||(29855461-29855532)
chr5 (63-133)||(29429606-29429676)
[»] chr7 (1 HSPs)
chr7 (63-128)||(9658327-9658391)
[»] chr4 (4 HSPs)
chr4 (63-128)||(13529351-13529415)
chr4 (63-133)||(2554162-2554232)
chr4 (63-128)||(3527881-3527946)
chr4 (89-145)||(26740741-26740797)
[»] chr6 (1 HSPs)
chr6 (64-128)||(7509734-7509798)


Alignment Details
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 63 - 170
Target Start/End: Original strand, 3455874 - 3455981
Alignment:
Q  63 ttaaattcaagtgcattaattacaagaaaatatttctacatttgacacattaacatgtgtcttaagagcacgacttaacattttcctattagtatttatg 162  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||| ||||    
T  3455874 ttaaatgcaagtgcattaattacaagaaaatatttctacatttgactcattaacttgtgtcttaagagcacggcttaacattttcctattagtatatatg 3455973  T
Q  163 gctatttc 170  Q
    ||||||||    
T  3455974 gctatttc 3455981  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 54362097 - 54362015
Alignment:
Q  63 ttaaattcaagtgcattaattacaagaaaatatttctacatttgacacattaacatgtgtcttaagagcacgacttaacattt 145  Q
    |||||||||| |||||| |||||||  |||||||||||| |||||| ||||||| |||| |||||| |||| | |||||||||    
T  54362097 ttaaattcaaatgcattgattacaaccaaatatttctacttttgactcattaacttgtgccttaagggcacaagttaacattt 54362015  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 9762752 - 9762804
Alignment:
Q  63 ttaaattcaagtgcattaattacaagaaaatatttctacatttgacacattaa 115  Q
    |||||||||| |||||||||||||| ||||||||||||| |||||| ||||||    
T  9762752 ttaaattcaaatgcattaattacaataaaatatttctacttttgactcattaa 9762804  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 20354755 - 20354710
Alignment:
Q  63 ttaaattcaagtgcattaattacaagaaaatatttctacatttgac 108  Q
    |||||||||| |||||||||||||| ||||||||||||| ||||||    
T  20354755 ttaaattcaaatgcattaattacaataaaatatttctacttttgac 20354710  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 9775963 - 9776026
Alignment:
Q  63 ttaaattcaagtgcattaattacaagaaaatatttctacatttgacacattaacatgtgtctta 126  Q
    |||||||||| |||||||| ||||| ||||||||| ||  |||||||||||||| |||| ||||    
T  9775963 ttaaattcaaatgcattaactacaataaaatatttttatttttgacacattaacttgtgcctta 9776026  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 929092 - 929010
Alignment:
Q  63 ttaaattcaagtgcattaattacaagaaaatatttctacatttgacacattaacatgtgtcttaagagcacgacttaacattt 145  Q
    |||||||||| |||||| ||||||| ||||||||||||| |||||| | ||||| |||||||||||  ||| | |||||||||    
T  929092 ttaaattcaaatgcattgattacaacaaaatatttctacttttgactctttaacttgtgtcttaaggacacaagttaacattt 929010  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 15215569 - 15215483
Alignment:
Q  63 ttaaattcaagtgcattaattacaagaaaatatttctacatttgacacattaacatgtgtcttaagagcacgacttaacattttcct 149  Q
    |||||||||| |||||||||| ||| || |||||||||| |||||| ||||||| | ||| |||||||||  | |||||||||||||    
T  15215569 ttaaattcaaatgcattaatttcaacaatatatttctacttttgactcattaacttatgttttaagagcataagttaacattttcct 15215483  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 34504242 - 34504161
Alignment:
Q  64 taaattcaagtgcattaattacaagaaaatatttctacatttgacacattaacatgtgtcttaagagcacgacttaacattt 145  Q
    ||||||||| |||||| ||| ||| ||  ||||||||| |||||  ||||||| ||||||||||| |||| | |||||||||    
T  34504242 taaattcaaatgcattgattgcaacaacttatttctacttttgattcattaacttgtgtcttaagggcacaagttaacattt 34504161  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 49044758 - 49044698
Alignment:
Q  66 aattcaagtgcattaattacaagaaaatatttctacatttgacacattaacatgtgtctta 126  Q
    ||||||| |||||||||||||| ||||||||||||| |||||| ||||||| | |||||||    
T  49044758 aattcaaatgcattaattacaataaaatatttctacttttgactcattaacttatgtctta 49044698  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 3150718 - 3150632
Alignment:
Q  63 ttaaattcaagtgcattaattacaagaaaatatttctacatttgacacattaacatgtgtcttaagagcacgacttaacattttcct 149  Q
    |||||||||| || ||||||||||| ||| |||||| || ||||||   ||||| ||||||||||||||||   |||||||||||||    
T  3150718 ttaaattcaaatgtattaattacaacaaattatttccacttttgacttgttaacttgtgtcttaagagcacaggttaacattttcct 3150632  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 123
Target Start/End: Original strand, 32543968 - 32544028
Alignment:
Q  63 ttaaattcaagtgcattaattacaagaaaatatttctacatttgacacattaacatgtgtc 123  Q
    ||||||| || ||||||||||| || ||||||||| ||| |||||||||||||| ||||||    
T  32543968 ttaaattaaattgcattaattataacaaaatatttatacttttgacacattaacttgtgtc 32544028  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 29855461 - 29855532
Alignment:
Q  74 tgcattaattacaagaaaatatttctacatttgacacattaacatgtgtcttaagagcacgacttaacattt 145  Q
    |||||||||||||| ||||||||| |||||||||| |||| || ||||||||||| |||  | |||||||||    
T  29855461 tgcattaattacaacaaaatatttttacatttgactcatttacttgtgtcttaagggcataagttaacattt 29855532  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 29429676 - 29429606
Alignment:
Q  63 ttaaattcaagtgcattaattacaagaaaatatttctacatttgacacattaacatgtgtcttaagagcac 133  Q
    |||||||||| || ||||||||||| |||||||||| || |||||| | ||||| |||| |||||| ||||    
T  29429676 ttaaattcaaatgtattaattacaacaaaatatttccacttttgactctttaacttgtgccttaagggcac 29429606  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 9658391 - 9658327
Alignment:
Q  63 ttaaattcaagtgcattaattacaagaaaatatttctacatttgacacattaacatgtgtcttaag 128  Q
    |||||||||| |||||||||||||| |||| |||| ||| |||||| ||||||| |||||||||||    
T  9658391 ttaaattcaaatgcattaattacaacaaaaaatttatacttttgactcattaac-tgtgtcttaag 9658327  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 13529415 - 13529351
Alignment:
Q  63 ttaaattcaagtgcattaattacaagaaaatatttctacatttgacacattaacatgtgtcttaag 128  Q
    |||||||||| |||||||||||||| |||| |||| ||| |||||| ||||||| |||||||||||    
T  13529415 ttaaattcaaatgcattaattacaacaaaaaatttatacttttgactcattaac-tgtgtcttaag 13529351  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 2554162 - 2554232
Alignment:
Q  63 ttaaattcaagtgcattaattacaagaaaatatttctacatttgacacattaacatgtgtcttaagagcac 133  Q
    |||||||||| ||||||||||||||  |||||||||||  |||||  ||||||| |||| |||||| ||||    
T  2554162 ttaaattcaaatgcattaattacaattaaatatttctatttttgattcattaacttgtgccttaagggcac 2554232  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 3527946 - 3527881
Alignment:
Q  63 ttaaattcaagtgcattaattacaagaaaatatttctacatttgacacattaacatgtgtcttaag 128  Q
    |||||||||| |||||| ||||||| ||||||||||||| || |||  ||| || |||||||||||    
T  3527946 ttaaattcaaatgcattgattacaacaaaatatttctactttggacttattgacttgtgtcttaag 3527881  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 145
Target Start/End: Complemental strand, 26740797 - 26740741
Alignment:
Q  89 aaaatatttctacatttgacacattaacatgtgtcttaagagcacgacttaacattt 145  Q
    ||||||||| || ||||||  ||||||| |||||||||||||||| | |||||||||    
T  26740797 aaaatatttttatatttgattcattaacgtgtgtcttaagagcacaagttaacattt 26740741  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 7509734 - 7509798
Alignment:
Q  64 taaattcaagtgcattaattacaagaaaatatttctacatttgacacattaacatgtgtcttaag 128  Q
    ||||||||| |||||| ||||||| | ||||||||||| |||||| ||||||| |||| ||||||    
T  7509734 taaattcaaatgcattgattacaacacaatatttctacttttgactcattaacttgtgccttaag 7509798  T

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