View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9459_high_13 (Length: 241)
Name: NF9459_high_13
Description: NF9459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9459_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 5476362 - 5476579
Alignment:
| Q |
1 |
atcaatcatgttccttgtgtaatcttactattgattctcagtttgaggaagacgaagaagacctacatacactcatacaatatgctctttttcacaatct |
100 |
Q |
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||||||||||||| |||| ||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5476362 |
atcaatcatgttcactgtggaatcttactattgatactcagtttcaggaaggtgaagaagacctacatacactcatacaatatgctctttttcacaatct |
5476461 |
T |
|
| Q |
101 |
tcagaacttgaatattaagataaatccaagcttgactcccaaatct---------cctttaattttagcctctcactccttgacattccttgagctttct |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5476462 |
tcagaacttgaatattaagataaatccaagcttgactcccaaatctgatttactccctttaattttagcctctaactccttgacattccttgagctttct |
5476561 |
T |
|
| Q |
192 |
tatcgtaggggtggtagt |
209 |
Q |
| |
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|||||||||||||||||| |
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| T |
5476562 |
tatcgtaggggtggtagt |
5476579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 8403823 - 8404034
Alignment:
| Q |
1 |
atcaatcatgttccttgtgtaatcttactattgattctcagtttgaggaagacgaagaagacctacatacactcatacaatatgctctttttcacaatct |
100 |
Q |
| |
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|||||||||||||| || ||||||| ||| ||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8403823 |
atcaatcatgttccctgcgtaatctgactgttgatactcagtttctggaaggtgaagaagacctacatacactcgtacaatatgctctttttcacaatct |
8403922 |
T |
|
| Q |
101 |
tcagaacttgaatattaagataaatccaagcttgactcccaaatct---------cctttaattttagcctctcactccttgacattccttgagctttct |
191 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||| || |||||||| ||| |||||||||| |||||||| |||||||||||| |
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| T |
8403923 |
tcagcacttgaatattaagataaatcaaagcttgactcccaaacctgagttactacctttaatcttaacctctcactctttgacatttcttgagctttct |
8404022 |
T |
|
| Q |
192 |
tatcgtaggggt |
203 |
Q |
| |
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|||||||||||| |
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| T |
8404023 |
tatcgtaggggt |
8404034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 59 - 192
Target Start/End: Complemental strand, 8359407 - 8359265
Alignment:
| Q |
59 |
agacctacatacactcatacaatatgctctttttcacaatcttcagaacttgaatattaagataaatccaagcttgactcccaaatct---------cct |
149 |
Q |
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||||||| |||| ||| ||||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||| | |||||||||| | ||| |
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| T |
8359407 |
agacctatataccctcctacaatatgttctttctcacaatcttcagcacttgaatattatgataaatccaagcattactcccaaatatgagttcctccct |
8359308 |
T |
|
| Q |
150 |
ttaattttagcctctcactccttgacattccttgagctttctt |
192 |
Q |
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||||| || | ||||||||| |||||||| ||||||||||||| |
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| T |
8359307 |
ttaatctttggctctcactctttgacatttcttgagctttctt |
8359265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 43144712 - 43144636
Alignment:
| Q |
70 |
cactcatacaatatgctctttttcacaatcttcagaacttgaatattaagataaatccaagcttgactcccaaatct |
146 |
Q |
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|||||||| |||||||||||||||||||| ||||| ||||||| ||||| ||||| |||||||| | ||||||||| |
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| T |
43144712 |
cactcatagaatatgctctttttcacaatgttcagcacttgaaaattaatataaacccaagctttagacccaaatct |
43144636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 33084193 - 33084246
Alignment:
| Q |
147 |
cctttaattttagcctctcactccttgacattccttgagctttcttatcgtagg |
200 |
Q |
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|||||||| || | ||||||||| |||||||| ||||||||||||||| ||||| |
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|
| T |
33084193 |
cctttaatctttggctctcactctttgacatttcttgagctttcttatggtagg |
33084246 |
T |
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