View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9459_high_3 (Length: 341)
Name: NF9459_high_3
Description: NF9459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9459_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 187 - 324
Target Start/End: Original strand, 13992426 - 13992563
Alignment:
| Q |
187 |
cattaattgcagctacattataatataaagaactttgaggttcaccacaaccctttgctaaccccaaatttcaaccgcaccagctgcattttctacatat |
286 |
Q |
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| T |
13992426 |
cattaattgcagctacattataatataaagaactttgaggttcaccacaactctttgctaaccccaaatttcaaccgcaccagctgcattttctacatat |
13992525 |
T |
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| Q |
287 |
aatcgaaacttcaaaatataagtaaaagtggtcatcca |
324 |
Q |
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| T |
13992526 |
aatcgaaacttcaaaatataagtaaaagtggtcatcca |
13992563 |
T |
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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 107
Target Start/End: Original strand, 13992310 - 13992345
Alignment:
| Q |
72 |
actctctattttttaagttatagtacttcgcaacaa |
107 |
Q |
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| T |
13992310 |
actctctattttttaagttatagtacttcgcaacaa |
13992345 |
T |
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