View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9459_low_10 (Length: 334)

Name: NF9459_low_10
Description: NF9459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9459_low_10
NF9459_low_10
[»] chr4 (5 HSPs)
chr4 (64-311)||(4104779-4105038)
chr4 (169-312)||(3498228-3498371)
chr4 (164-307)||(35186028-35186171)
chr4 (183-307)||(9265015-9265139)
chr4 (218-312)||(22628085-22628179)
[»] chr8 (9 HSPs)
chr8 (64-312)||(14979174-14979434)
chr8 (53-312)||(18803475-18803747)
chr8 (73-312)||(15423565-15423818)
chr8 (73-312)||(15334502-15334755)
chr8 (73-312)||(15514871-15515124)
chr8 (172-313)||(20463257-20463398)
chr8 (169-313)||(13783222-13783366)
chr8 (170-312)||(39323476-39323618)
chr8 (218-259)||(43431215-43431256)
[»] chr1 (5 HSPs)
chr1 (64-313)||(44717609-44717870)
chr1 (164-314)||(9326956-9327106)
chr1 (164-313)||(21859253-21859402)
chr1 (183-287)||(22919036-22919140)
chr1 (121-169)||(21859409-21859457)
[»] chr7 (9 HSPs)
chr7 (64-312)||(48631657-48631917)
chr7 (165-314)||(1847310-1847459)
chr7 (183-311)||(1844302-1844430)
chr7 (183-312)||(4486178-4486307)
chr7 (169-312)||(20657068-20657211)
chr7 (197-312)||(10370975-10371090)
chr7 (202-288)||(19388291-19388377)
chr7 (219-296)||(37079307-37079384)
chr7 (183-303)||(18195875-18195995)
[»] chr5 (8 HSPs)
chr5 (64-311)||(21300362-21300621)
chr5 (129-312)||(137847-138042)
chr5 (169-312)||(25644457-25644600)
chr5 (164-312)||(19021606-19021753)
chr5 (164-312)||(22065492-22065640)
chr5 (183-312)||(7201406-7201535)
chr5 (187-291)||(34286881-34286985)
chr5 (247-312)||(15613367-15613432)
[»] chr6 (10 HSPs)
chr6 (53-312)||(14964103-14964374)
chr6 (128-312)||(12353597-12353793)
chr6 (64-285)||(33594618-33594851)
chr6 (164-312)||(22215935-22216083)
chr6 (169-312)||(2068255-2068398)
chr6 (187-303)||(9190408-9190524)
chr6 (197-297)||(14288241-14288341)
chr6 (164-238)||(9881831-9881905)
chr6 (183-238)||(8883287-8883342)
chr6 (259-311)||(9881790-9881842)
[»] scaffold0464 (1 HSPs)
scaffold0464 (64-302)||(4316-4564)
[»] chr3 (8 HSPs)
chr3 (129-313)||(10309721-10309905)
chr3 (169-314)||(7490173-7490317)
chr3 (197-313)||(13516600-13516716)
chr3 (169-303)||(12900759-12900893)
chr3 (172-314)||(18072086-18072227)
chr3 (185-312)||(15847092-15847219)
chr3 (226-312)||(36551909-36551995)
chr3 (247-312)||(27442623-27442688)
[»] scaffold0019 (1 HSPs)
scaffold0019 (164-310)||(111443-111589)
[»] scaffold0001 (1 HSPs)
scaffold0001 (169-311)||(52914-53056)
[»] scaffold1175 (1 HSPs)
scaffold1175 (164-312)||(1804-1951)
[»] scaffold0006 (1 HSPs)
scaffold0006 (170-291)||(43913-44034)
[»] scaffold1940 (1 HSPs)
scaffold1940 (183-312)||(94-220)
[»] chr2 (3 HSPs)
chr2 (255-312)||(11293849-11293906)
chr2 (242-312)||(20424637-20424707)
chr2 (254-312)||(18768390-18768448)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 64 - 311
Target Start/End: Original strand, 4104779 - 4105038
Alignment:
Q  64 ttaaattagacatttgcgacagttagcaaccgtttcaagtcccttgaaatccacgtgaatctcctcatttgcgactgttggcaactgtcgcaatgccttt 163  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  4104779 ttaaattagacatttgcgacagttagcaaccgttgcaagtcccttgaaatccatgtgaatctcctcatttgcgattgttggcaactgtcgcaatgccttt 4104878  T
Q  164 tgcg------------gctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcga 251  Q
    ||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4104879 tgcggcagttggtgcggctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggcgaacagtcgcaattgtacatttgcga 4104978  T
Q  252 cccttctaacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagt 311  Q
    |||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  4104979 cccttctaacagtcgcaatcagccattttaaaagtcgcaaaatgcagtttttcttgtagt 4105038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 169 - 312
Target Start/End: Complemental strand, 3498371 - 3498228
Alignment:
Q  169 ctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgca 268  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||    
T  3498371 ctgttctatgaagggtcgcaaaagacagttgcgaccccaacatccgcgactgttcgggaacagtcgcaaatgtacatttgcgaccattctaacagtcgca 3498272  T
Q  269 atcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    ||||   |||||||||||||||| ||||||||||||||||||||    
T  3498271 atcagcgattttaaaagtcgcaaaatgcagtttttcttgtagtg 3498228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 164 - 307
Target Start/End: Original strand, 35186028 - 35186171
Alignment:
Q  164 tgcggctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacag 263  Q
    |||| ||||| || |||||||||||||||||| |||||||||||||||||| ||||||||  ||||||| |||| |||||||||||||||||||||||||    
T  35186028 tgcgactgttttacgaagggtcgcaaatgacagttgcgaccccaacatccgtgactgttgaagaacagttgcaaatgtacatttgcgacccttctaacag 35186127  T
Q  264 tcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttg 307  Q
    |||||||||    ||||||||||| ||| |||||||||||||||    
T  35186128 tcgcaatcagcgtttttaaaagtcacaaaatgcagtttttcttg 35186171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 183 - 307
Target Start/End: Complemental strand, 9265139 - 9265015
Alignment:
Q  183 gtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatcaatcattttaa 282  Q
    |||||||| ||||  ||||||||||||||  ||| ||||||||||| |||| ||| ||||||||||||||| ||||||||||||||||   |||||||||    
T  9265139 gtcgcaaaagacagatgcgaccccaacattagcgcctgttggggaagagtctcaaatgtacatttgcgacctttctaacagtcgcaattcgtcattttaa 9265040  T
Q  283 aagtcgcaacatgcagtttttcttg 307  Q
    ||||||| | ||||| |||||||||    
T  9265039 aagtcgccaaatgcattttttcttg 9265015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 312
Target Start/End: Original strand, 22628085 - 22628179
Alignment:
Q  218 ctgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    |||||| |||| | |||||| ||||||||||| ||||||  ||||||| ||||  ||||||||||  ||| ||| ||||  ||||||||||||||    
T  22628085 ctgttgaggaataatcgcaaatgtacatttgcaacccttagaacagtcacaatacatcattttaagggtcacaaaatgccttttttcttgtagtg 22628179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 176; Significance: 9e-95; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 64 - 312
Target Start/End: Complemental strand, 14979434 - 14979174
Alignment:
Q  64 ttaaattagacatttgcgacagttagcaaccgtttcaagtcccttgaaatccacgtgaatctcctcatttgcgactgttggcaactgtcgcaatgccttt 163  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||  |||||||||| |||||||    
T  14979434 ttaaattagacatttgcgacagttagcaaccgttgcaagtcccttgaaatccatgtgaatctcctcatttgcgactgttgaaaactgtcgcagtgccttt 14979335  T
Q  164 tgcggc------------tgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcga 251  Q
    ||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14979334 tgcggcagttggtgcggctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcacaattgtacatttgcga 14979235  T
Q  252 cccttctaacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    |||||||||||||| ||||||   |||||||||||||||| ||||||||||||||||||||    
T  14979234 cccttctaacagtcacaatcagctattttaaaagtcgcaaaatgcagtttttcttgtagtg 14979174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 53 - 312
Target Start/End: Original strand, 18803475 - 18803747
Alignment:
Q  53 gtcgcagcatattaaattagacatttgcgacagttagcaaccgtttcaagtcccttgaaatccacgtgaatctcctcatttgcgactgttggcaactgtc 152  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| ||||||| ||| |||||||| ||||    
T  18803475 gtcgcagcatattaaattagacatttgcggcagttagcaaccgttgcaagtcccttgaaatccatgtgaatctcttcatttgtgacagttggcaagtgtc 18803574  T
Q  153 gcaatgccttttg------------cggctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattg 240  Q
    ||| |||||||||            |||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| | || |||    
T  18803575 gcagtgccttttgtggtagttggtgcggctgttatatgaagggtcgcaaaagacacttgcgaccccaacatccgcgacagttggggaacagccacagttg 18803674  T
Q  241 tacatttgcgacccttctaacagtcgcaatcaatcattttaaaagtcgc-aacatgcagtttttcttgtagtg 312  Q
    | |||||||||||||| |||| ||||||||||  ||||||||| ||||| || ||||||||||||||||||||    
T  18803675 tgcatttgcgacccttttaaccgtcgcaatcagccattttaaatgtcgcaaaaatgcagtttttcttgtagtg 18803747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 73 - 312
Target Start/End: Original strand, 15423565 - 15423818
Alignment:
Q  73 acatttgcgacagttagcaaccgtttcaagtcccttgaaa--tccacgtgaatctcctcatttgcgactgttggcaactgtcgcaatgccttttg----- 165  Q
    ||||||||| ||||||||||||||| ||||||| ||||||  |||| ||||||||| ||||||||||| |||||||| ||||||| |||||||||         
T  15423565 acatttgcggcagttagcaaccgttgcaagtccattgaaaaatccatgtgaatctcttcatttgcgacggttggcaagtgtcgcagtgccttttgaggca 15423664  T
Q  166 -------cggctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttct 258  Q
           ||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |    
T  15423665 gttggtgcggctgttctatgaagggtcgcaaaagtcacttgcgaccccaacatccgcgacggttggggaacagccgcaattgtgcatttgcgacccttgt 15423764  T
Q  259 aacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    ||| ||||||||||   |||||||| ||||||| ||||||||||||||||||||    
T  15423765 aaccgtcgcaatcagcaattttaaatgtcgcaaaatgcagtttttcttgtagtg 15423818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 73 - 312
Target Start/End: Original strand, 15334502 - 15334755
Alignment:
Q  73 acatttgcgacagttagcaaccgtttcaagtcccttgaaa--tccacgtgaatctcctcatttgcgactgttggcaactgtcgcaatgccttttg----- 165  Q
    ||||||||| ||||||||||||||| ||||||| ||||||  |||| ||||||||| || |||||||| |||||||| ||||||| |||||||||         
T  15334502 acatttgcggcagttagcaaccgttgcaagtccattgaaaaatccatgtgaatctcttcgtttgcgacggttggcaagtgtcgcagtgccttttgtggca 15334601  T
Q  166 -------cggctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttct 258  Q
           ||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |    
T  15334602 gttggtgcggctgttctatgaagggtcgcaaaagtcacttgcgaccccaacatccgcgacggttggggaacagccgcaattgtgcatttgcgacccttgt 15334701  T
Q  259 aacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    ||| ||||||||||   |||||||| ||||||| ||||||||||||||||||||    
T  15334702 aaccgtcgcaatcagcaattttaaatgtcgcaaaatgcagtttttcttgtagtg 15334755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 73 - 312
Target Start/End: Original strand, 15514871 - 15515124
Alignment:
Q  73 acatttgcgacagttagcaaccgtttcaagtcccttgaaa--tccacgtgaatctcctcatttgcgactgttggcaactgtcgcaatgccttttg----- 165  Q
    ||||||||| ||||||||||||||| ||||||| ||||||  |||| ||||||||| || |||||||| |||||||| ||||||| |||||||||         
T  15514871 acatttgcggcagttagcaaccgttgcaagtccattgaaaaatccatgtgaatctcttcgtttgcgacggttggcaagtgtcgcagtgccttttgtggca 15514970  T
Q  166 -------cggctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttct 258  Q
           ||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |    
T  15514971 gttggtgcggctgttctatgaagggtcgcaaaagtcacttgcgaccccaacatccgcgacggttggggaacagccgcaattgtgcatttgcgacccttgt 15515070  T
Q  259 aacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    ||| ||||||||||   |||||||| ||||||| ||||||||||||||||||||    
T  15515071 aaccgtcgcaatcagcaattttaaatgtcgcaaaatgcagtttttcttgtagtg 15515124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 172 - 313
Target Start/End: Complemental strand, 20463398 - 20463257
Alignment:
Q  172 ttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatc 271  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  20463398 ttctatgaagggtcgcaaatgacagttgcgaccccaacatccgcgactgttggggaacagtcgcaaatgtacatttgcgacccttctaactgtcgcaatc 20463299  T
Q  272 aatcattttaaaagtcgcaacatgcagtttttcttgtagtgt 313  Q
    ||  |||||||| ||||||| |||||||||||||||||||||    
T  20463298 aacaattttaaatgtcgcaaaatgcagtttttcttgtagtgt 20463257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 169 - 313
Target Start/End: Complemental strand, 13783366 - 13783222
Alignment:
Q  169 ctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgca 268  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13783366 ctgttctatgaagggtcgcaaaagacagttgcgaccccaacatccgcgactgttggggaacagtcgcaaatgtacatttgcgacccttctaacagtcgca 13783267  T
Q  269 atcaatcattttaaaagtcgcaacatgcagtttttcttgtagtgt 313  Q
    || |   |||||||||||||||| |||||||||||||||||||||    
T  13783266 attagcgattttaaaagtcgcaaaatgcagtttttcttgtagtgt 13783222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 170 - 312
Target Start/End: Complemental strand, 39323618 - 39323476
Alignment:
Q  170 tgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaa 269  Q
    ||||||| ||||||||| ||| |||| |||||||||||||||||||||| ||||| |||| ||| ||| |||||||||||||||||||||||||||||||    
T  39323618 tgttctacgaagggtcgtaaaagacagttgcgaccccaacatccgcgaccgttggagaaccgtcacaaatgtacatttgcgacccttctaacagtcgcaa 39323519  T
Q  270 tcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    |||    ||||||||||||||| ||||||||||||||||||||    
T  39323518 tcagcatttttaaaagtcgcaaaatgcagtttttcttgtagtg 39323476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 43431256 - 43431215
Alignment:
Q  218 ctgttggggaacagtcgcaattgtacatttgcgacccttcta 259  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  43431256 ctgttggggaacagtcgcaaatgtacatttgcgacccttcta 43431215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 64 - 313
Target Start/End: Complemental strand, 44717870 - 44717609
Alignment:
Q  64 ttaaattagacatttgcgacagttagcaaccgtttcaagtcccttgaaatccacgtgaatctcctcatttgcgactgttggcaactgtcgcaatgccttt 163  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| || ||||    
T  44717870 ttaaattagacatttgcgacagttagcatccgttgcaagtcccttgaaatccatgtgaatctcgtcatttgcgactgttggcaactgtcgcagtggcttt 44717771  T
Q  164 tgcggc------------tgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcga 251  Q
    ||||||            ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||    
T  44717770 tgcggcggttggtgcggctgttctatgaagggtcgcaaaagacacttgcgaccccaacatctgcgactgttggaaaacagtcgcaattgtacatttgcga 44717671  T
Q  252 cccttctaacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtgt 313  Q
     ||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  44717670 tccttctaacagtcgcaatcagccattttaaaagtcgcaaaatgcagtttttcttgtagtgt 44717609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 164 - 314
Target Start/End: Original strand, 9326956 - 9327106
Alignment:
Q  164 tgcggctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacag 263  Q
    |||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  9326956 tgcgactgttctttgaagggtcgcaaatgacagttgcgaccccaacatccgcgactgttggggaacagtcgcacatgtacatttgcgacccttctaacag 9327055  T
Q  264 tcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtgta 314  Q
    ||||||||||  ||||||||||| |||| ||||||||||||||||||||||    
T  9327056 tcgcaatcaacaattttaaaagttgcaaaatgcagtttttcttgtagtgta 9327106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 164 - 313
Target Start/End: Complemental strand, 21859402 - 21859253
Alignment:
Q  164 tgcggctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacag 263  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||  |||||||||||| | || |||| ||||||||||||||||||| |    
T  21859402 tgcggctgttttatgaagggtcgcaaaagacacttgcgaccccaacatccgcgaaagttggggaacagccacagttgtgcatttgcgacccttctaaccg 21859303  T
Q  264 tcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtgt 313  Q
    ||| | |||  ||||||||| ||||||| |||||||||||||||||||||    
T  21859302 tcgtagtcagccattttaaatgtcgcaaaatgcagtttttcttgtagtgt 21859253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 22919036 - 22919140
Alignment:
Q  183 gtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatcaatcattttaa 282  Q
    |||||||| |||  |||||||||||||||  | | |||||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||| |    
T  22919036 gtcgcaaaagactgttgcgaccccaacattagagtctgttggggaacagtcgcaaatatacatttgcgacccttctaacagtcgcaatgagtcattttca 22919135  T
Q  283 aagtc 287  Q
    |||||    
T  22919136 aagtc 22919140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 21859457 - 21859409
Alignment:
Q  121 aatctcctcatttgcgactgttggcaactgtcgcaatgccttttgcggc 169  Q
    |||||| ||||||||||| |||||||| ||||||| |||||||||||||    
T  21859457 aatctcttcatttgcgacagttggcaagtgtcgcagtgccttttgcggc 21859409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 64 - 312
Target Start/End: Original strand, 48631657 - 48631917
Alignment:
Q  64 ttaaattagacatttgcgacagttagcaaccgtttcaagtcccttgaaatccacgtgaatctcctcatttgcgactgttggcaactgtcgcaatgccttt 163  Q
    |||||||| ||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||    
T  48631657 ttaaattacacatttgcgacggttagcaaccgttgcaagtcccttgaaatccatgtgaatctcctcatttgcgactgttcgcaactgtcgcagtgccttt 48631756  T
Q  164 tgcggc------------tgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcga 251  Q
    ||||||            ||||  ||||||||||||| |||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||    
T  48631757 tgcggcagttggtgcggctgttacatgaagggtcgcagatgacacttgcgaccccaacatccgcgactgttacggaacagccgcaattgtacatttgcga 48631856  T
Q  252 cccttctaacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    |||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  48631857 cccttctaacagtcgcaatcagccattttaaaagtcgcaaaatgcagtttttcttgtagtg 48631917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 165 - 314
Target Start/End: Original strand, 1847310 - 1847459
Alignment:
Q  165 gcggctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagt 264  Q
    |||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||    
T  1847310 gcggctgttctatgaagggtcgcaaaagtcacttgcaaccccaacatccgcgactgttggggaacagccgcaattgtgcatttgtgacccttctaacagt 1847409  T
Q  265 cgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtgta 314  Q
    ||||||||  |||||||||||||| || ||||||||||||||||||||||    
T  1847410 cgcaatcagccattttaaaagtcgtaaaatgcagtttttcttgtagtgta 1847459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 183 - 311
Target Start/End: Complemental strand, 1844430 - 1844302
Alignment:
Q  183 gtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatcaatcattttaa 282  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| |||| |||||||||    
T  1844430 gtcgcaaatgacagttgcgaccccaacatccgcgactgttggggaactgtcgcaaatgtacatttgcgacccttctaaccgtcgccatcagtcattttaa 1844331  T
Q  283 aagtcgcaacatgcagtttttcttgtagt 311  Q
    | ||||||| ||||| |||||||||||||    
T  1844330 atgtcgcaaaatgcattttttcttgtagt 1844302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 183 - 312
Target Start/End: Complemental strand, 4486307 - 4486178
Alignment:
Q  183 gtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatcaatcattttaa 282  Q
    |||||||| |||| || |||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||    
T  4486307 gtcgcaaaagacagttacgaccctaacatccgcgtctgttggggaacagtcgcaaatgtacatttgcgacccttctaacagtcgcaatctgtcattttaa 4486208  T
Q  283 aagtcgcaacatgcagtttttcttgtagtg 312  Q
    ||||||||| ||||| ||||||||||||||    
T  4486207 aagtcgcaaaatgcattttttcttgtagtg 4486178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 169 - 312
Target Start/End: Original strand, 20657068 - 20657211
Alignment:
Q  169 ctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgca 268  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||||| |||||||||||| ||||||| |||| |||||||||||||||||||||||||    
T  20657068 ctgttctttgaagggtcgcaaatgactgttgcaaccccaacatccgcgtctgttggggaaccgtcgcaaatgtatatttgcgacccttctaacagtcgca 20657167  T
Q  269 atcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    ||||   |||||||| ||||||| |  || ||||||||||||||    
T  20657168 atcagcaattttaaaggtcgcaaaacacattttttcttgtagtg 20657211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 197 - 312
Target Start/End: Original strand, 10370975 - 10371090
Alignment:
Q  197 ttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatcaatcattttaaaagtcgcaacatgc 296  Q
    |||||||||||||||||| | || |||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||  |||||| || |    
T  10370975 ttgcgaccccaacatccgtgtctattggggaacagtagcaaatgtacatttgcgacccttctaacagtcgtaatcaatcattttaaagatcgcaaaatac 10371074  T
Q  297 agtttttcttgtagtg 312  Q
    |   ||||||||||||    
T  10371075 aaagtttcttgtagtg 10371090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 288
Target Start/End: Complemental strand, 19388377 - 19388291
Alignment:
Q  202 accccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatcaatcattttaaaagtcg 288  Q
    ||||||| |||| ||||||||||||||||||||||  || |||| |||||| |||||||||||||||||| ||||||||||||||||    
T  19388377 accccaatatccccgactgttggggaacagtcgcacatggacatctgcgacacttctaacagtcgcaatccatcattttaaaagtcg 19388291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 37079307 - 37079384
Alignment:
Q  219 tgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatcaatcattttaaaagtcgcaacatgc 296  Q
    |||||||||||| ||| || ||||||||||||||| |||||| ||||||||||| |||||||||||||||||| ||||    
T  37079307 tgttggggaacaatcgtaaatgtacatttgcgaccattctaatagtcgcaatcagtcattttaaaagtcgcaaaatgc 37079384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 303
Target Start/End: Complemental strand, 18195995 - 18195875
Alignment:
Q  183 gtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatcaatcattttaa 282  Q
    |||||||| |||| |||| |||||||||| | || ||||| || ||||||||| | |||||||| ||| |||||||||||||  ||||||  ||||||||    
T  18195995 gtcgcaaaagacagttgcaaccccaacattcacgcctgttcggaaacagtcgccaatgtacattcgcggcccttctaacagttacaatcagccattttaa 18195896  T
Q  283 aagtcgcaacatgcagttttt 303  Q
    |||| |||| ||||| |||||    
T  18195895 aagttgcaaaatgcatttttt 18195875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 64 - 311
Target Start/End: Complemental strand, 21300621 - 21300362
Alignment:
Q  64 ttaaattagacatttgcgacagttagcaaccgtttcaagtcccttgaaatccacgtgaatctcctcatttgcgactgttggcaactgtcgcaatgccttt 163  Q
    ||||||||||||||||||||||||   ||| ||| |||||||||||||  ||| ||||||||||||||||||| ||||| |||||||||||| |||||||    
T  21300621 ttaaattagacatttgcgacagttgtgaactgttgcaagtcccttgaataccatgtgaatctcctcatttgcggctgttagcaactgtcgcagtgccttt 21300522  T
Q  164 tgcggc------------tgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcga 251  Q
    ||||||            ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21300521 tgcggcagttggtgcggctgttctatgaagggtcgcaaaagacacttgcgaccccaacatccgcgactgttgcggaacagtcgcaattgtacatttgcga 21300422  T
Q  252 cccttctaacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagt 311  Q
    |||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||    
T  21300421 cccttctaacagtcgcaatcagccattttaaaagtcgcaaaatgcagtttttcttgtagt 21300362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 129 - 312
Target Start/End: Original strand, 137847 - 138042
Alignment:
Q  129 catttgcgactgttggcaactgtcgcaatgccttttgcggctgtt------------ctatgaagggtcgcaaatgacacttgcgaccccaacatccgcg 216  Q
    |||||||||||||||| |||||||||||  |||||||||||||||            ||| ||||||||||||| |||| |||||||||||||||||| |    
T  137847 catttgcgactgttgggaactgtcgcaacaccttttgcggctgttggtgcgactattctacgaagggtcgcaaaagacagttgcgaccccaacatccgtg 137946  T
Q  217 actgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||   ||||||||||||||| ||||||||||||||||||||    
T  137947 actgttagggaacagtcgcaaatgtacatttgcgacccttctaacagtcgcaatcaacgtttttaaaagtcgcaaaatgcagtttttcttgtagtg 138042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 169 - 312
Target Start/End: Original strand, 25644457 - 25644600
Alignment:
Q  169 ctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgca 268  Q
    ||||| |||||||| ||||||| |||| ||||||||||| |||||||  |||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  25644457 ctgttttatgaaggctcgcaaaagacagttgcgaccccatcatccgcatctgttggggaacagtcgcaaatgtacatttgcgacccttcgaacagtcgca 25644556  T
Q  269 atcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    |||||  |||||||||||||||| ||||| ||||||||||||||    
T  25644557 atcaacaattttaaaagtcgcaaaatgcaatttttcttgtagtg 25644600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 164 - 312
Target Start/End: Complemental strand, 19021753 - 19021606
Alignment:
Q  164 tgcggctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacag 263  Q
    |||| ||||||| ||||  |||||||| |||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||    
T  19021753 tgcgactgttctctgaactgtcgcaaaagacagttgcgaccccaacatccgcgtctgttggggaacagtcgcaaatgtacatttgcga-ccttctaacag 19021655  T
Q  264 tcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    ||||||||  |||||||||| | ||||| ||||| ||||||||||||||    
T  19021654 tcgcaatctgtcattttaaatggcgcaaaatgcattttttcttgtagtg 19021606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 164 - 312
Target Start/End: Complemental strand, 22065640 - 22065492
Alignment:
Q  164 tgcggctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacag 263  Q
    |||| ||||||| ||||  |||||||| |||| |||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||    
T  22065640 tgcgactgttctctgaactgtcgcaaaagacagttgcgaccccaacatccgcgtctgttggggaactgtcgcaaatgtacatttgcgacccttctaacag 22065541  T
Q  264 tcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    |||||| |  | |||||||| ||||||| ||||| ||||||||||||||    
T  22065540 tcgcaaactgttattttaaatgtcgcaaaatgcattttttcttgtagtg 22065492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 183 - 312
Target Start/End: Complemental strand, 7201535 - 7201406
Alignment:
Q  183 gtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatcaatcattttaa 282  Q
    |||||||| |||| |||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||  ||||||||    
T  7201535 gtcgcaaaagacagttgcgaccccaacatccgcgtctgttggggaaccgtcgcaaatgtacatttgcgacccttctaaccgtcgcaatcagccattttaa 7201436  T
Q  283 aagtcgcaacatgcagtttttcttgtagtg 312  Q
    | ||||||| |||||  |||||||||||||    
T  7201435 aggtcgcaaaatgcaaattttcttgtagtg 7201406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 187 - 291
Target Start/End: Complemental strand, 34286985 - 34286881
Alignment:
Q  187 caaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatcaatcattttaaaagt 286  Q
    |||| |||| ||| |||||||||||| |||  |||||||||||||||| || ||||||| |||||||||||||||||||||||||| ||||| |||| ||    
T  34286985 caaaagacagttgtgaccccaacatcagcgtttgttggggaacagtcgtaaatgtacatatgcgacccttctaacagtcgcaatcagtcattgtaaatgt 34286886  T
Q  287 cgcaa 291  Q
    |||||    
T  34286885 cgcaa 34286881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 15613367 - 15613432
Alignment:
Q  247 tgcgacccttctaacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    ||||||||||  ||||||||||||| ||||||||||  ||||||| ||||| ||||||||||||||    
T  15613367 tgcgacccttagaacagtcgcaatccatcattttaagggtcgcaaaatgcattttttcttgtagtg 15613432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 53 - 312
Target Start/End: Original strand, 14964103 - 14964374
Alignment:
Q  53 gtcgcagcatattaaattagacatttgcgacagttagcaaccgtttcaagtcccttgaaatccacgtgaatctcctcatttgcgactgttggcaactgtc 152  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| |||||||| ||||    
T  14964103 gtcgcagtatattaaattagacatttgcggcagttagcaaccgttgcaagtcccttgaaatccatgtgaatctcttcatttgcgacagttggcaagtgtc 14964202  T
Q  153 gcaatgccttttgcggc------------tgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattg 240  Q
    ||| |||||||||||||            |||||||||||||||| |||| ||||||||||||||||||||||||| | |||||||||||| |||| |||    
T  14964203 gcagtgccttttgcggcagttggtgtggctgttctatgaagggtcacaaaagacacttgcgaccccaacatccgcggcagttggggaacagccgcagttg 14964302  T
Q  241 tacatttgcgacccttctaacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    | |||||||||||||| |||| |||||||| |  ||||||||| ||||||| |||||||||||| |||||||    
T  14964303 tgcatttgcgacccttttaaccgtcgcaataagccattttaaatgtcgcaaaatgcagtttttcctgtagtg 14964374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 128 - 312
Target Start/End: Complemental strand, 12353793 - 12353597
Alignment:
Q  128 tcatttgcgactgttggcaactgtcgcaatgccttttgcggc------------tgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgc 215  Q
    |||||||||||||||||||||||||||| |||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||    
T  12353793 tcatttgcgactgttggcaactgtcgcagtgccttttgcggcagttggtgcggctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgc 12353694  T
Q  216 gactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  12353693 gactgttggagaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatcagccattttaaaagtcgcaaaatgcagtttttcttgtagtg 12353597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 64 - 285
Target Start/End: Complemental strand, 33594851 - 33594618
Alignment:
Q  64 ttaaattagacatttgcgacagttagcaaccgtttcaagtcccttgaaatccacgtgaat-ctcctcatttgcgactgttggcaactgtcgcaatgcctt 162  Q
    ||||||||||||| ||||||||||   ||| ||  |||||||||| ||| |||  ||||  ||| |||||||||||||||||||||||||||| ||||||    
T  33594851 ttaaattagacatctgcgacagttct-aactgtcgcaagtcccttcaaaaccatctgaaagctcttcatttgcgactgttggcaactgtcgcagtgcctt 33594753  T
Q  163 ttgcggc------------tgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcg 250  Q
    |||||||            |||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||    
T  33594752 ttgcggcagttggtgcggctgttctatgaagagtcgcaaatgacacttgcgtccccaacatccgcgactgttggagaacagtcgcaattgtatatttgcg 33594653  T
Q  251 acccttctaacagtcgcaatcaatcattttaaaag 285  Q
    | ||||||||||||||||||||  |||||||||||    
T  33594652 atccttctaacagtcgcaatcagccattttaaaag 33594618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 164 - 312
Target Start/End: Complemental strand, 22216083 - 22215935
Alignment:
Q  164 tgcggctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacag 263  Q
    |||| ||||||||  |||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  22216083 tgcgtctgttctaccaagggtcgcaaaagacagttgcgaccccaacatccgcgactgttggtgaacagtcgcaaatgtacatttgcgacccttctaacag 22215984  T
Q  264 tcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    |||||||||    |||||||||||| || ||||||||||||||||||||    
T  22215983 tcgcaatcagcgtttttaaaagtcgaaaaatgcagtttttcttgtagtg 22215935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 169 - 312
Target Start/End: Complemental strand, 2068398 - 2068255
Alignment:
Q  169 ctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgca 268  Q
    ||||||| |||||||||| |||||||  |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2068398 ctgttctttgaagggtcgtaaatgactgttgcgaccccaacatccgcgtctgttggggaacagtcgcaaatgtacatttgcgacccttctaacagtcgca 2068299  T
Q  269 atcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    ||||   |||||||| ||||||| ||||| ||||||||||||||    
T  2068298 atcagcaattttaaaggtcgcaaaatgcattttttcttgtagtg 2068255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 187 - 303
Target Start/End: Complemental strand, 9190524 - 9190408
Alignment:
Q  187 caaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatcaatcattttaaaagt 286  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||   ||||||||||    
T  9190524 caaaagacagttgcgaccccaacatccgcgactgttggggaacagtcgcaaatgtacatttgcgacccttctaacagtcgcaatcaacgtttttaaaagt 9190425  T
Q  287 cgcaacatgcagttttt 303  Q
    ||||| |||||||||||    
T  9190424 cgcaaaatgcagttttt 9190408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 197 - 297
Target Start/End: Complemental strand, 14288341 - 14288241
Alignment:
Q  197 ttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatcaatcattttaaaagtcgcaacatgc 296  Q
    ||||||||||||||||   | ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14288341 ttgcgaccccaacatctttgtctgttagggaacagtcgcaaatgtacatttgcgacccttctaacagtcgcaatcaatcattttaaaagtcgcaaaatgc 14288242  T
Q  297 a 297  Q
    |    
T  14288241 a 14288241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 9881905 - 9881831
Alignment:
Q  164 tgcggctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaat 238  Q
    |||| ||||||| ||||  |||||||| |||| |||||||||||||||| | |||||||||||||||||||||||    
T  9881905 tgcgactgttctctgaactgtcgcaaaagacagttgcgaccccaacatctgggactgttggggaacagtcgcaat 9881831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 8883287 - 8883342
Alignment:
Q  183 gtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaat 238  Q
    |||||||| |||| ||||||||||||||| |||| |||||||||||| ||||||||    
T  8883287 gtcgcaaaagacagttgcgaccccaacattcgcgtctgttggggaaccgtcgcaat 8883342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 9881842 - 9881790
Alignment:
Q  259 aacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagt 311  Q
    ||||||||||||||  ||||||||||||||||| |||||  ||||||||||||    
T  9881842 aacagtcgcaatcagccattttaaaagtcgcaaaatgcaaattttcttgtagt 9881790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 64 - 302
Target Start/End: Original strand, 4316 - 4564
Alignment:
Q  64 ttaaattagacatttgcgacagttagcaaccgtttcaagtcccttgaaatccacgtgaatctcctcatttgcgactgttggcaactgtcgcaatgccttt 163  Q
    |||||||||| ||||||||||||||||||| ||| ||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| |||||||    
T  4316 ttaaattagaaatttgcgacagttagcaactgttgcaagtcccttgaa-tccatgtgaatctcctcatttgcgactgttagcaactgtcgcagtgccttt 4414  T
Q  164 tgcggc------------tgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcga 251  Q
    ||||||            ||||||||||||| ||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  4415 tgcggcaattggtacggctgttctatgaagg-tcgcaaaagacacttgcgaccccaacatccgcacctgttggggaacagtcgcaattgtacatttgcga 4513  T
Q  252 cccttctaacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttt 302  Q
    |||||| ||||||||||||||   ||||||||||||| || ||| ||||||    
T  4514 cccttcaaacagtcgcaatcagcgattttaaaagtcgtaaaatgtagtttt 4564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 129 - 313
Target Start/End: Complemental strand, 10309905 - 10309721
Alignment:
Q  129 catttgcgactgttggcaactgtcgcaatgccttttgcggctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaa 228  Q
    |||||||||||||| | |||||||||||| ||||||||||||||||  ||||   ||||||| |||| |||||||||||||||||||| ||||||| |||    
T  10309905 catttgcgactgtttggaactgtcgcaataccttttgcggctgttcgttgaactatcgcaaaagacagttgcgaccccaacatccgcgtctgttggagaa 10309806  T
Q  229 cagtcgcaattgtacatttgcgacccttctaacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtgt 313  Q
    ||||||||| ||||||||||||||||||||||||||| |||||  |||||||||||||||||| ||||| |||||||||| ||||    
T  10309805 cagtcgcaaatgtacatttgcgacccttctaacagtcacaatctgtcattttaaaagtcgcaaaatgcattttttcttgttgtgt 10309721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 169 - 314
Target Start/End: Complemental strand, 7490317 - 7490173
Alignment:
Q  169 ctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgca 268  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||||||| ||    
T  7490317 ctgttctatgaagggtcgcaaaagacagttgcgaccccaacatccgcgtctgttgcgaaacagtcgcaaatgtacatttgcgacccttctaacagtcaca 7490218  T
Q  269 atcaatcattttaaaagtcgcaacatgcagtttttcttgtagtgta 314  Q
    ||||| |||||||||||| |||| |||||| |||||||||||||||    
T  7490217 atcaaccattttaaaagttgcaaaatgcag-ttttcttgtagtgta 7490173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 197 - 313
Target Start/End: Complemental strand, 13516716 - 13516600
Alignment:
Q  197 ttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatcaatcattttaaaagtcgcaacatgc 296  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| ||| ||| ||||    
T  13516716 ttgcgaccccaacatccgcgactgttagggaacagtcgcaaatgtacatttgtgacccttctaacagtcgcaatcagtcattttaaaggtcacaaaatgc 13516617  T
Q  297 agtttttcttgtagtgt 313  Q
    | |||||||||||||||    
T  13516616 attttttcttgtagtgt 13516600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 169 - 303
Target Start/End: Complemental strand, 12900893 - 12900759
Alignment:
Q  169 ctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgca 268  Q
    ||||||| ||||  |||||||| ||||  |||||||||||||||||||  |||||||||||| |||||| |||||||||| ||||||||||||||||  |    
T  12900893 ctgttctctgaactgtcgcaaaagacagctgcgaccccaacatccgcgcttgttggggaacaatcgcaaatgtacatttgagacccttctaacagtcata 12900794  T
Q  269 atcaatcattttaaaagtcgcaacatgcagttttt 303  Q
    |||| |||| ||||||||||||| ||||| |||||    
T  12900793 atcagtcatattaaaagtcgcaaaatgcatttttt 12900759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 172 - 314
Target Start/End: Complemental strand, 18072227 - 18072086
Alignment:
Q  172 ttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatc 271  Q
    |||||||||||||| |||  ||||||||||||||||||||||||| || ||| |||||| || |||||||||||||  || | |||||||||||||||||    
T  18072227 ttctatgaagggtcacaagagacacttgcgaccccaacatccgcgcctattgaggaacaatcacaattgtacatttatga-ctttctaacagtcgcaatc 18072129  T
Q  272 aatcattttaaaagtcgcaacatgcagtttttcttgtagtgta 314  Q
    |  |||||||||| |||||| ||| |||||||||| |||||||    
T  18072128 agccattttaaaattcgcaaaatgtagtttttcttatagtgta 18072086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 185 - 312
Target Start/End: Original strand, 15847092 - 15847219
Alignment:
Q  185 cgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatcaatcattttaaaa 284  Q
    ||||||||||  |||||||||||||||  ||| ||||||| |||||||||||  ||||||||||||||||||||||||||||||||||   |||||||      
T  15847092 cgcaaatgactattgcgaccccaacattagcgtctgttggcgaacagtcgcatatgtacatttgcgacccttctaacagtcgcaatcatcaattttaacg 15847191  T
Q  285 gtcgcaacatgcagtttttcttgtagtg 312  Q
    ||||||| ||||  ||||||||||||||    
T  15847192 gtcgcaaaatgcgttttttcttgtagtg 15847219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 36551909 - 36551995
Alignment:
Q  226 gaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    |||| ||||||| |||  || ||||||||||  ||| ||||||||| ||||||||||  ||||||| ||||| ||||||||||||||    
T  36551909 gaaccgtcgcaaatgtggatctgcgacccttagaaccgtcgcaatccatcattttaagggtcgcaaaatgcattttttcttgtagtg 36551995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 27442623 - 27442688
Alignment:
Q  247 tgcgacccttctaacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    ||||||||||  |||  |||||||| ||||||||||  ||||||| ||||| ||||||||||||||    
T  27442623 tgcgacccttagaaccatcgcaatccatcattttaagggtcgcaaaatgcattttttcttgtagtg 27442688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 164 - 310
Target Start/End: Complemental strand, 111589 - 111443
Alignment:
Q  164 tgcggctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacag 263  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||| |    
T  111589 tgcgactgttctatgaagggtcgcaaatgacagttgcgaccccaacatccgcgactgttggaaaacagtcgcaaatgtacatttgcgacccttctaactg 111490  T
Q  264 tcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtag 310  Q
    |||||||||   |||||||| ||||||| ||||||||||||||||||    
T  111489 tcgcaatcagcaattttaaatgtcgcaaaatgcagtttttcttgtag 111443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 169 - 311
Target Start/End: Complemental strand, 53056 - 52914
Alignment:
Q  169 ctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgca 268  Q
    ||||||| ||||  |||||||| |||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53056 ctgttctctgaactgtcgcaaaagacagttgcgaccccaacatccgcatctgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgca 52957  T
Q  269 atcaatcattttaaaagtcgcaacatgcagtttttcttgtagt 311  Q
    |||| ||||||||||||||  || || || |||||||||||||    
T  52956 atcagtcattttaaaagtcagaaaatacattttttcttgtagt 52914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1175 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold1175
Description:

Target: scaffold1175; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 164 - 312
Target Start/End: Original strand, 1804 - 1951
Alignment:
Q  164 tgcggctgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacag 263  Q
    |||| |||||||||||||||||||||| |||| |||||||||||||||  ||| |||||||||||  ||| ||| |||||||||||||||||||||||||    
T  1804 tgcgtctgttctatgaagggtcgcaaaagacagttgcgaccccaacattagcgcctgttggggaag-gtcacaaatgtacatttgcgacccttctaacag 1902  T
Q  264 tcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    || ||||||  |||||||||| |||||| ||||||||||||||||||||    
T  1903 tcacaatcagccattttaaaattcgcaaaatgcagtttttcttgtagtg 1951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 170 - 291
Target Start/End: Complemental strand, 44034 - 43913
Alignment:
Q  170 tgttctatgaagggtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaa 269  Q
    |||||||| ||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||| ||    
T  44034 tgttctattaagggtcgcaaatgactgttgcgaccccaacatccgcgactgttggcgaacagtcgcaaatgtacatttgcaacccttctaacagtcgtaa 43935  T
Q  270 tcaatcattttaaaagtcgcaa 291  Q
    |||   |||||||| |||||||    
T  43934 tcagcaattttaaaggtcgcaa 43913  T

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Target: scaffold1940 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1940
Description:

Target: scaffold1940; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 312
Target Start/End: Original strand, 94 - 220
Alignment:
Q  183 gtcgcaaatgacacttgcgaccccaacatccgcgactgttggggaacagtcgcaattgtacatttgcgacccttctaacagtcgcaatcaatcattttaa 282  Q
    |||||||| |||| |||||||||||||||||||| | |||||||||| ||||||| |||  ||||||||   ||||||| ||||||||||  ||||| ||    
T  94 gtcgcaaaagacagttgcgaccccaacatccgcgtc-gttggggaaccgtcgcaaatgt--atttgcgatggttctaaccgtcgcaatcagccatttcaa 190  T
Q  283 aagtcgcaacatgcagtttttcttgtagtg 312  Q
    | ||||||| |||||  |||| ||||||||    
T  191 aggtcgcaaaatgcatatttttttgtagtg 220  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 11293906 - 11293849
Alignment:
Q  255 ttctaacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    |||||||||||||||||| | |||||||||||||||| |||||||||||||| |||||    
T  11293906 ttctaacagtcgcaatcagtaattttaaaagtcgcaaaatgcagtttttcttatagtg 11293849  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 242 - 312
Target Start/End: Original strand, 20424637 - 20424707
Alignment:
Q  242 acatttgcgacccttctaacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    |||||||||||| ||||||||||||||||||  |||||||| ||| |||| |||||  |||||||||||||    
T  20424637 acatttgcgacctttctaacagtcgcaatcagccattttaatagttgcaaaatgcaaattttcttgtagtg 20424707  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 18768448 - 18768390
Alignment:
Q  254 cttctaacagtcgcaatcaatcattttaaaagtcgcaacatgcagtttttcttgtagtg 312  Q
    |||||||||| |||||||| ||||| |||||||||||| ||||  |||||||| |||||    
T  18768448 cttctaacagacgcaatcagtcattctaaaagtcgcaaaatgccttttttcttttagtg 18768390  T

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