View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9459_low_12 (Length: 316)
Name: NF9459_low_12
Description: NF9459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9459_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 13871390 - 13871094
Alignment:
| Q |
18 |
atatcattgcggcaccggagatgttatgtaaaaacttaacacttattgtctaaattcgttatcatagattatgtgttatttgttaacaagtgttgacttt |
117 |
Q |
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| T |
13871390 |
atatcattgcggcaccggagatgttatgtaaaaacttaacacttattgtccaaattcgttatcatagattatgtgttatttgtcaacaagtgttgacttt |
13871291 |
T |
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| Q |
118 |
attggtaggccaaaaaacatgtgccatatgtgccgattgataagcgatatttggccgctcacgagtggaatgacaaaagtgttgattgtccttctaagag |
217 |
Q |
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| T |
13871290 |
attggtaggccaaaaaacatgtgccatatgcgccgattgataagcgatatttggccgctcacgagtggaatgacaaaagtgttgattgtccttctaagag |
13871191 |
T |
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| Q |
218 |
aacatatgtaagtttctggtcgcatccattaccctgatattacttgttcagcaagttaaatatgtatcttattatctaataactacatactcaggtt |
314 |
Q |
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| T |
13871190 |
aacatatgtaagtttctggtcgcatccattaccttgatattacttgttcagcaagttaaatatgtatcttattagctcataactacatacacaggtt |
13871094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 14011515 - 14011219
Alignment:
| Q |
18 |
atatcattgcggcaccggagatgttatgtaaaaacttaacacttattgtctaaattcgttatcatagattatgtgttatttgttaacaagtgttgacttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14011515 |
atatcattgcggcaccggagatgttatgtaaaaacttaacacttattgtccaaattcgttatcatagattatgtgttatttgtcaacaagtgttgacttt |
14011416 |
T |
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| Q |
118 |
attggtaggccaaaaaacatgtgccatatgtgccgattgataagcgatatttggccgctcacgagtggaatgacaaaagtgttgattgtccttctaagag |
217 |
Q |
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| T |
14011415 |
attggtaggccaaaaaacatgtgccatatgcgccgattgataagcgatatttggccgctcacgagtggaatgacaaaagtgttgattgtccttctaagag |
14011316 |
T |
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| Q |
218 |
aacatatgtaagtttctggtcgcatccattaccctgatattacttgttcagcaagttaaatatgtatcttattatctaataactacatactcaggtt |
314 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||| |
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| T |
14011315 |
aacatatgtaagtttctggtcgcatccattaccttgatattacttgttcagcaagttaaatatgtatcttattagctcataactacatacacaggtt |
14011219 |
T |
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