View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9459_low_13 (Length: 305)
Name: NF9459_low_13
Description: NF9459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9459_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 136 - 197
Target Start/End: Original strand, 22369270 - 22369331
Alignment:
| Q |
136 |
aaagtgtgcaaaagatgtgtgcgcttacttcacataatagaaagcaattaactaataactgt |
197 |
Q |
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| T |
22369270 |
aaagtgtgcaaaagatgtgtgcgcttacttcacataatagaaagcaattaactaataactgt |
22369331 |
T |
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Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 22369364 - 22369416
Alignment:
| Q |
230 |
tggagtactaaccgatacctttgactatattgaaaatgatatgaaggatatct |
282 |
Q |
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| T |
22369364 |
tggagtactaaccgatatctttgactatattgaaaatgatatgaaggatatct |
22369416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 22369133 - 22369179
Alignment:
| Q |
1 |
gtaagagaattagaaagcaaattggagaacgaactgagacatatgac |
47 |
Q |
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| T |
22369133 |
gtaagagaattagaaagcaaattggagaacgaactgagacatatgac |
22369179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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