View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9459_low_15 (Length: 299)

Name: NF9459_low_15
Description: NF9459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9459_low_15
NF9459_low_15
[»] chr2 (7 HSPs)
chr2 (19-286)||(33072019-33072280)
chr2 (176-266)||(33081743-33081833)
chr2 (19-106)||(33081866-33081953)
chr2 (19-52)||(33091780-33091813)
chr2 (19-52)||(33099276-33099309)
chr2 (208-256)||(33090386-33090434)
chr2 (208-256)||(33097882-33097930)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 286
Target Start/End: Complemental strand, 33072280 - 33072019
Alignment:
Q  19 ggtatacttgcttacatttatcaatttatgtttcnnnnnnncaatcccatgatatatgttatgaattatgcaccccttttgaaattcttgacattctagc 118  Q
    |||||||||||||| |||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  33072280 ggtatacttgcttatatttatcaatttatgtttctttttttcaatcccatgatatatgttaagaattatgcaccccttttgaaattcttgaaattctagc 33072181  T
Q  119 attttgttacatcatgtatgttggtatgtcaatattaatgtacacatacacaactcaccaacaccccttagaaaacagtgtttccattttctctaaatga 218  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33072180 attttgttacatcatgtatgtcggtatgtcaatattaatgtacaca------actcaccaacaccccttagaaaacagtgtttccattttctctaaatga 33072087  T
Q  219 ataggaacaagaaacgtttttagataggaaaatcatgttaattacaacatgtagccattttttagcct 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33072086 ataggaacaagaaacgtttttagataggaaaatcatgttaattacaacatgtaaccattttttagcct 33072019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 176 - 266
Target Start/End: Complemental strand, 33081833 - 33081743
Alignment:
Q  176 ccaacaccccttagaaaacagtgtttccattttctctaaatgaataggaacaagaaacgtttttagataggaaaatcatgttaattacaac 266  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  33081833 ccaacaccccttagaaaacagtgttttcattttctctaaatgaataggaacaaggaacgtttttagataggaaaatcatgttatttacaac 33081743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 33081953 - 33081866
Alignment:
Q  19 ggtatacttgcttacatttatcaatttatgtttcnnnnnnncaatcccatgatatatgttatgaattatgcaccccttttgaaattct 106  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||||    ||||||||| |||||||||||||||    
T  33081953 ggtatacttgcttacatttatcaatttatgtttcttcttttcaatcccatgatatatgtcgcaaattatgcagcccttttgaaattct 33081866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 33091813 - 33091780
Alignment:
Q  19 ggtatacttgcttacatttatcaatttatgtttc 52  Q
    ||||||||||||||||||||||||||||||||||    
T  33091813 ggtatacttgcttacatttatcaatttatgtttc 33091780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 33099309 - 33099276
Alignment:
Q  19 ggtatacttgcttacatttatcaatttatgtttc 52  Q
    ||||||||||||||||||||||||||||||||||    
T  33099309 ggtatacttgcttacatttatcaatttatgtttc 33099276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 33090434 - 33090386
Alignment:
Q  208 tctctaaatgaataggaacaagaaacgtttttagataggaaaatcatgt 256  Q
    ||||||||||| ||||||||||||| ||| |||||||| ||||| ||||    
T  33090434 tctctaaatgagtaggaacaagaaatgttcttagatagaaaaataatgt 33090386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 256
Target Start/End: Complemental strand, 33097930 - 33097882
Alignment:
Q  208 tctctaaatgaataggaacaagaaacgtttttagataggaaaatcatgt 256  Q
    ||||||||||| ||||||||||||| ||| |||||||| ||||| ||||    
T  33097930 tctctaaatgagtaggaacaagaaatgttcttagatagaaaaataatgt 33097882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University