View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9459_low_16 (Length: 292)
Name: NF9459_low_16
Description: NF9459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9459_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 285
Target Start/End: Original strand, 10173864 - 10174131
Alignment:
| Q |
18 |
aaataaaccaaagaagccatgtcaaatcatgagattaaaaggaagaacaagtagtataaattaacaaacgtaagaacagatgacattgatgaacaattaa |
117 |
Q |
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| T |
10173864 |
aaataaactaaagaagccatgtcaaatcatgagattaaagggaagaacaagtagtataaattaacaaacgtaagaacagatgacattgatgaacaattaa |
10173963 |
T |
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| Q |
118 |
agaactaaacggtaaatcaatgtattagaaaaagagagataatgaattaatcttaccgatgactaatccaattcgtcactgtttcgtaaaaatcaatgag |
217 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
10173964 |
agaactaaacagtaaatcaatgtattagaaaaagagagataatgacttaatcttaccgatgactaatccaattccttactgtttcgtaaaaatcaatgag |
10174063 |
T |
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| Q |
218 |
gacaaatagattaagcacacagtgtatcatagaaatgaactcgacctttgtacacatttcaactccat |
285 |
Q |
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| T |
10174064 |
gacaaatagattaagcacacagtctatcatagaaatcaactcgacctttgtacacatttcaactccat |
10174131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 1238099 - 1238353
Alignment:
| Q |
18 |
aaataaaccaaagaagccatgtcaaatcatgagattaaaaggaagaacaagtagtataaattaacaaacgta----agaacagatgacattgatgaacaa |
113 |
Q |
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| T |
1238099 |
aaataaaccaaagaagccatgtcaaatcatgatgctaaaaggaagaacaagtagtacaaat-aacaaacgtacgtaagaacacatgacattaataaacaa |
1238197 |
T |
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| Q |
114 |
ttaaagaactaaacggtaaatcaatgtattagaaaaagagagataatgaattaatcttaccgatgactaatccaattcgtcactgtttcgtaaaaatcaa |
213 |
Q |
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| T |
1238198 |
ttaaagaacaaaacggtaaatcaattgattagaaaa-gagagataatgaattaatcttaccgatgatcaatccaattcctcactgtttggtaaaaatcaa |
1238296 |
T |
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| Q |
214 |
tgaggacaaatagattaagcacacagtgtatcatagaaatgaactcgacctttgtac |
270 |
Q |
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| T |
1238297 |
tggtgacaaatcgattaagcacacggtgtatcatagaaatcaactcgacctttgtac |
1238353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 114 - 253
Target Start/End: Complemental strand, 1174516 - 1174378
Alignment:
| Q |
114 |
ttaaagaactaaacggtaaatcaatgtattagaaaaagagagataatgaattaatcttaccgatgactaatccaattcgtcactgtttcgtaaaaatcaa |
213 |
Q |
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||||||||| ||||| ||||||||| || | |||||||||||||||||||||||||||||| || | ||||||||| || |||||| ||||||||||| |
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| T |
1174516 |
ttaaagaacaaaacgataaatcaatcgatca-aaaaagagagataatgaattaatcttaccgtcgattcatccaattcatcgctgtttggtaaaaatcaa |
1174418 |
T |
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| Q |
214 |
tgaggacaaatagattaagcacacagtgtatcatagaaat |
253 |
Q |
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| T |
1174417 |
tggtgacaaatcaattaagcacatggtctatcatacaaat |
1174378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 794578 - 794648
Alignment:
| Q |
18 |
aaataaaccaaagaagccatgtcaaatcatgagattaaaaggaagaacaagtagtataaattaacaaacgt |
88 |
Q |
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|||||||||||||||| |||||||||||||||| |||||| || ||||||||||| ||| |||||||||| |
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| T |
794578 |
aaataaaccaaagaagtcatgtcaaatcatgaggctaaaagaaataacaagtagtacaaagtaacaaacgt |
794648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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