View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9459_low_18 (Length: 282)

Name: NF9459_low_18
Description: NF9459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9459_low_18
NF9459_low_18
[»] chr3 (20 HSPs)
chr3 (1-266)||(54426007-54426278)
chr3 (211-266)||(23157095-23157150)
chr3 (211-266)||(46435781-46435836)
chr3 (212-266)||(26043020-26043074)
chr3 (211-263)||(31531479-31531531)
chr3 (211-266)||(26517266-26517321)
chr3 (211-266)||(30476041-30476096)
chr3 (211-266)||(41727289-41727344)
chr3 (211-266)||(46048522-46048577)
chr3 (211-266)||(52325554-52325609)
chr3 (212-266)||(26121333-26121387)
chr3 (212-265)||(53717578-53717631)
chr3 (214-266)||(12077794-12077846)
chr3 (214-266)||(13084409-13084461)
chr3 (214-266)||(29676790-29676842)
chr3 (211-266)||(11388121-11388176)
chr3 (211-266)||(34055913-34055968)
chr3 (211-266)||(40645674-40645729)
chr3 (211-266)||(41308827-41308882)
chr3 (211-264)||(51263082-51263135)
[»] chr6 (7 HSPs)
chr6 (212-266)||(4250708-4250762)
chr6 (214-266)||(1763817-1763869)
chr6 (211-266)||(15981795-15981850)
chr6 (211-266)||(16327124-16327179)
chr6 (211-266)||(19838932-19838987)
chr6 (211-266)||(31945962-31946017)
chr6 (212-266)||(3729391-3729445)
[»] chr8 (18 HSPs)
chr8 (211-266)||(2562780-2562835)
chr8 (211-266)||(37956122-37956177)
chr8 (211-266)||(57238-57293)
chr8 (211-266)||(14522654-14522709)
chr8 (211-266)||(24512217-24512272)
chr8 (211-266)||(25185031-25185086)
chr8 (211-266)||(25198290-25198345)
chr8 (211-266)||(41086975-41087030)
chr8 (211-266)||(3113583-3113638)
chr8 (211-266)||(24962415-24962470)
chr8 (211-266)||(31252705-31252759)
chr8 (211-266)||(31746455-31746510)
chr8 (211-266)||(43980633-43980688)
chr8 (212-266)||(7772514-7772568)
chr8 (211-265)||(36437502-36437556)
chr8 (212-266)||(43191527-43191581)
chr8 (230-266)||(38761408-38761444)
chr8 (214-266)||(45283832-45283884)
[»] chr7 (16 HSPs)
chr7 (211-266)||(4089549-4089604)
chr7 (211-266)||(20123451-20123506)
chr7 (211-266)||(2276626-2276681)
chr7 (211-266)||(6376182-6376237)
chr7 (211-266)||(21388243-21388298)
chr7 (211-266)||(25750369-25750424)
chr7 (211-266)||(37048036-37048091)
chr7 (211-267)||(10595145-10595201)
chr7 (211-266)||(1324709-1324764)
chr7 (211-266)||(21801105-21801160)
chr7 (211-266)||(29636089-29636144)
chr7 (211-266)||(37673738-37673793)
chr7 (211-266)||(48193616-48193671)
chr7 (211-266)||(48767565-48767620)
chr7 (214-266)||(10685089-10685141)
chr7 (214-266)||(40211326-40211378)
[»] chr4 (15 HSPs)
chr4 (211-266)||(5536498-5536553)
chr4 (211-266)||(20262443-20262498)
chr4 (211-266)||(16070432-16070487)
chr4 (211-266)||(25477226-25477281)
chr4 (211-266)||(30153271-30153326)
chr4 (211-266)||(50782779-50782834)
chr4 (211-266)||(51787772-51787827)
chr4 (211-266)||(29584895-29584950)
chr4 (211-266)||(34543703-34543758)
chr4 (211-266)||(38136356-38136411)
chr4 (211-266)||(39237638-39237693)
chr4 (219-266)||(46729314-46729361)
chr4 (211-266)||(54438511-54438566)
chr4 (212-266)||(24072769-24072823)
chr4 (211-263)||(19654429-19654481)
[»] chr2 (14 HSPs)
chr2 (211-266)||(27297578-27297633)
chr2 (211-266)||(45214726-45214781)
chr2 (211-266)||(9718221-9718276)
chr2 (211-266)||(20361984-20362039)
chr2 (211-266)||(35178842-35178897)
chr2 (211-266)||(41665711-41665766)
chr2 (211-266)||(44421450-44421505)
chr2 (212-266)||(43650036-43650090)
chr2 (211-266)||(8065121-8065176)
chr2 (211-266)||(13534415-13534470)
chr2 (211-266)||(15851532-15851587)
chr2 (211-266)||(27749513-27749568)
chr2 (211-266)||(28265000-28265055)
chr2 (211-266)||(44424596-44424651)
[»] chr1 (24 HSPs)
chr1 (211-266)||(16582533-16582588)
chr1 (211-266)||(30898611-30898666)
chr1 (211-266)||(48721916-48721971)
chr1 (211-264)||(28334265-28334318)
chr1 (211-266)||(5085137-5085192)
chr1 (211-266)||(23982640-23982695)
chr1 (211-266)||(32047442-32047497)
chr1 (211-266)||(33231840-33231895)
chr1 (211-266)||(44335289-44335344)
chr1 (211-266)||(3143403-3143458)
chr1 (211-266)||(8984709-8984764)
chr1 (211-266)||(15512829-15512884)
chr1 (211-266)||(15911600-15911655)
chr1 (211-266)||(27531099-27531154)
chr1 (211-266)||(28949012-28949067)
chr1 (211-266)||(30336059-30336114)
chr1 (211-266)||(34696931-34696986)
chr1 (211-266)||(36084970-36085025)
chr1 (211-266)||(38680475-38680530)
chr1 (211-266)||(46495309-46495364)
chr1 (211-256)||(15179410-15179455)
chr1 (211-260)||(47643542-47643591)
chr1 (214-266)||(8877775-8877827)
chr1 (214-266)||(34102339-34102391)
[»] chr5 (11 HSPs)
chr5 (215-266)||(15898511-15898562)
chr5 (211-266)||(27587839-27587894)
chr5 (211-266)||(4738631-4738686)
chr5 (211-266)||(25690737-25690792)
chr5 (211-266)||(27642503-27642558)
chr5 (211-266)||(27798157-27798212)
chr5 (211-266)||(34877667-34877722)
chr5 (211-266)||(39690534-39690589)
chr5 (212-266)||(36177294-36177348)
chr5 (214-266)||(10523322-10523374)
chr5 (211-258)||(33862871-33862919)


Alignment Details
Target: chr3 (Bit Score: 134; Significance: 8e-70; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 54426278 - 54426007
Alignment:
Q  1 aagtctcagatcaaataacggagcagacacataaatcctagttttggttgtgaactagtacataagaacaagtt-aggaaaaataagctgttcatgcaat 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| || |  ||||||||| ||||||||||||    
T  54426278 aagtctcagatcaaataacggagcagacacataaatcctagttttggttgtgaac---tacataagaacaacttaattaaaaataagttgttcatgcaat 54426182  T
Q  100 ctgttatttttcagcaacaaaaataattaacgnnnnnnnnnngagaacaaattcaaaaatcaatttatatctatataatactctatccatcc-------- 191  Q
    ||||||||||||||||||||||||||||||||          ||||||||||||||||||| ||||||||||||||||||||||||||||||            
T  54426181 ctgttatttttcagcaacaaaaataattaacgaaaaaaaaaagagaacaaattcaaaaatcgatttatatctatataatactctatccatcccggtatgt 54426082  T
Q  192 aagccccgttgnnnnnnnncacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||| | |||        |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  54426081 aagcctctttgttttttttcacatttcttaagaaaaaatatcaatgtagttgatgtgtctgttttgtgtgttaat 54426007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 23157095 - 23157150
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||| |||||||||| || |||||||||||||||| ||||||    
T  23157095 cacatttcttaagaaaaattgtcagtgtaattaatgtgtctgttttgtgagttaat 23157150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 46435836 - 46435781
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||||||||| || |||||||||||||||||||||||    
T  46435836 cacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaat 46435781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 26043020 - 26043074
Alignment:
Q  212 acatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||||| |||||||||| || || ||||||||||||||||||||    
T  26043020 acatttcttaagaaaaattgtcagtgtaattaatatgtctgttttgtgtgttaat 26043074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 263
Target Start/End: Complemental strand, 31531531 - 31531479
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgtt 263  Q
    |||||||||||||||||  |||||||||| || ||||||||||||||||||||    
T  31531531 cacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgtt 31531479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 26517321 - 26517266
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||||||||| || ||||||||||||| |||||||||    
T  26517321 cacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttctgtgttaat 26517266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 30476041 - 30476096
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||| |||||||||  |||||||||| || |||||||||||||||||||||||    
T  30476041 cacattttttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaat 30476096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 41727344 - 41727289
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||| ||||  |||||||||| || |||||||||||||||||||||||    
T  41727344 cacatttcttaaaaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaat 41727289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 46048522 - 46048577
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||||||||| || ||||||||||||||||| |||||    
T  46048522 cacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtattaat 46048577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 52325609 - 52325554
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||||||| |||||| || |||||||| |||| |||||||||    
T  52325609 cacatttcttaagaaaaaatgttagtgtaattaatgtgtctattttatgtgttaat 52325554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 26121333 - 26121387
Alignment:
Q  212 acatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||||  |||||||||| || |||||| ||||||||||||||||    
T  26121333 acatttcttaagaaaagttgtcagtgtaattaatgtgtttgttttgtgtgttaat 26121387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 53717631 - 53717578
Alignment:
Q  212 acatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaa 265  Q
    ||||||||||||||| | ||||| |||| || ||||||||||||||||||||||    
T  53717631 acatttcttaagaaatattgtcaatgtaattaatgtgtctgttttgtgtgttaa 53717578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 12077846 - 12077794
Alignment:
Q  214 atttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||  |||||||||| || |||||||| ||||||||||||||    
T  12077846 atttcttaagaaaagttgtcagtgtaattaatgtgtctcttttgtgtgttaat 12077794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 13084461 - 13084409
Alignment:
Q  214 atttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||  ||||||| || || |||||||||||||||||||||||    
T  13084461 atttcttaagaaaagttgtcagtataattaatgtgtctgttttgtgtgttaat 13084409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 29676842 - 29676790
Alignment:
Q  214 atttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||| |||||||||| || |||||||| |||| |||||||||    
T  29676842 atttcttaagaaaaattgtcagtgtaattaatgtgtctattttatgtgttaat 29676790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 11388121 - 11388176
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||| ||| |||||| || |||||||| ||||| ||||||||    
T  11388121 cacatttcttaagaaaaattgttagtgtaattaatgtgtctattttgcgtgttaat 11388176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 34055968 - 34055913
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||| ||||| ||||| |||| || || ||||||||||||||||||||    
T  34055968 cacatttcttaaaaaaaattgtcaatgtaattaatatgtctgttttgtgtgttaat 34055913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 40645674 - 40645729
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||||   |||| ||||| || |||||||||||||||||||||||    
T  40645674 cacatttcttaagaaatgttgtctgtgtaattaatgtgtctgttttgtgtgttaat 40645729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 41308882 - 41308827
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||| |||   |||||||||| || |||||||||||||||||||||||    
T  41308882 cacatttcttaaaaaatgttgtcagtgtaattaatgtgtctgttttgtgtgttaat 41308827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Original strand, 51263082 - 51263135
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgtta 264  Q
    |||||||||||| ||||| ||| |||||| || ||||||||||||| |||||||    
T  51263082 cacatttcttaaaaaaaattgttagtgtaattaatgtgtctgttttatgtgtta 51263135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 4250762 - 4250708
Alignment:
Q  212 acatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||||| |||||||||| || |||||||||||||||||||||||    
T  4250762 acatttcttaagaaaaattgtcagtgtaattaatgtgtctgttttgtgtgttaat 4250708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 1763817 - 1763869
Alignment:
Q  214 atttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||  |||||||||| || |||||||||||||||||||||||    
T  1763817 atttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaat 1763869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 15981795 - 15981850
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||  ||||| || |||||||||||||||||||||||    
T  15981795 cacatttcttaagaaaagttgttggtgtaattaatgtgtctgttttgtgtgttaat 15981850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 16327124 - 16327179
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||||| | || || |||||||||||||||||||||||    
T  16327124 cacatttcttaagaaaagttgtcaatataattaatgtgtctgttttgtgtgttaat 16327179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 19838932 - 19838987
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||| ||||||||| |||||||| |||| |||||||||    
T  19838932 cacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaat 19838987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 31946017 - 31945962
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||| |||||| || |||||||| ||||||||||||||    
T  31946017 cacatttcttaagaaaatttgttagtgtaattaatgtgtctattttgtgtgttaat 31945962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 3729391 - 3729445
Alignment:
Q  212 acatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||||| |||  ||||| || |||||||| ||||||||||||||    
T  3729391 acatttcttaagaaaaattgttggtgtaattaatgtgtctattttgtgtgttaat 3729445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 2562835 - 2562780
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||| |||||||    
T  2562835 cacatttcttaagaaaaactgtcagtgtaattaatgtgtctgttttgtatgttaat 2562780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 37956122 - 37956177
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||||||||| || |||||||||||||||||||||||    
T  37956122 cacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaat 37956177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 57293 - 57238
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||| ||||| || |||||||||||||||||||||||    
T  57293 cacatttcttaagaaaagttgtcggtgtaattaatgtgtctgttttgtgtgttaat 57238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 14522709 - 14522654
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||| ||| |||||| || |||||| ||||||||||||||||    
T  14522709 cacatttcttaagaaaaattgttagtgtaattaatgtgtatgttttgtgtgttaat 14522654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 24512272 - 24512217
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||| |||||||||  |||||||||| || |||||||||||||||||||||||    
T  24512272 cacattttttaagaaaatttgtcagtgtaattaatgtgtctgttttgtgtgttaat 24512217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 25185031 - 25185086
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||||||||||  | |||||||||||||||||||||||    
T  25185031 cacatttcttaagaaaagttgtcagtgtaactaatgtgtctgttttgtgtgttaat 25185086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 25198290 - 25198345
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||||||||| || |||||| ||||||||||||||||    
T  25198290 cacatttcttaagaaaagttgtcagtgtaattaatgtgtttgttttgtgtgttaat 25198345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 41086975 - 41087030
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||| | |||||||||| || ||||||||| |||||||||||||    
T  41086975 cacatttcttaagaaatattgtcagtgtaattaatgtgtctgatttgtgtgttaat 41087030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 3113638 - 3113583
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||| ||||| | |||||||| || || ||||||||||||||||||||    
T  3113638 cacatttcttaaaaaaaattatcagtgtaattaatatgtctgttttgtgtgttaat 3113583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 24962470 - 24962415
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||| ||||||||| |||||||| |||| |||||||||    
T  24962470 cacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaat 24962415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 31252759 - 31252705
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||| ||||| | |||||||| || |||||||||||||||||||||||    
T  31252759 cacatttcttaa-aaaaattatcagtgtaattaatgtgtctgttttgtgtgttaat 31252705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 31746510 - 31746455
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||| ||| |||| | || |||||||| ||||||||||||||    
T  31746510 cacatttcttaagaaaaattgttagtgcaattaatgtgtctattttgtgtgttaat 31746455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 43980688 - 43980633
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||| ||||||||| |||||||| |||| |||||||||    
T  43980688 cacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaat 43980633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 7772514 - 7772568
Alignment:
Q  212 acatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||| |||||||||  ||||| |||| || |||||||||||||||||||||||    
T  7772514 acattttttaagaaaagttgtcattgtaattaatgtgtctgttttgtgtgttaat 7772568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 36437502 - 36437556
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaa 265  Q
    ||||||| |||||||||||||| |||| | || |||||||| |||||||||||||    
T  36437502 cacattttttaagaaaaaatgttagtgcaattaatgtgtctattttgtgtgttaa 36437556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 43191581 - 43191527
Alignment:
Q  212 acatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||||||||| | | ||||| |||||||| |||| |||||||||    
T  43191581 acatttcttaagaaaaaatgttaatttagttaatgtgtctattttatgtgttaat 43191527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 38761444 - 38761408
Alignment:
Q  230 tgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||| || |||||||||||||||||||||||    
T  38761444 tgtcagtgtaattaatgtgtctgttttgtgtgttaat 38761408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 45283884 - 45283832
Alignment:
Q  214 atttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||| | ||| |||| || ||||||||||||| |||||||||    
T  45283884 atttcttaagaaaaattatcaatgtaattaatgtgtctgttttatgtgttaat 45283832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 4089604 - 4089549
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||||||||| || |||||||||||||||||||||||    
T  4089604 cacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaat 4089549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 20123451 - 20123506
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||||||||| || |||||||||||||||||||||||    
T  20123451 cacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaat 20123506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 2276681 - 2276626
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||| ||||  ||||||||||||| || ||||||||||||||||||||    
T  2276681 cacatttcttaacaaaagttgtcagtgtagttaatttgtctgttttgtgtgttaat 2276626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 6376237 - 6376182
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||| ||| |||||| || |||| ||||||||||||||||||    
T  6376237 cacatttcttaagaaaaattgttagtgtaattaatgtctctgttttgtgtgttaat 6376182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 21388243 - 21388298
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||| ||||| || |||||||||||||||||||||||    
T  21388243 cacatttcttaagaaaatttgtcggtgtaattaatgtgtctgttttgtgtgttaat 21388298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 25750369 - 25750424
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||| ||||  |||||||||| || |||||||||||||||||||||||    
T  25750369 cacatttcttaaaaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaat 25750424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 37048036 - 37048091
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  | |||||||| || |||||||||||||||||||||||    
T  37048036 cacatttcttaagaaaagttatcagtgtaattaatgtgtctgttttgtgtgttaat 37048091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 10595201 - 10595145
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaatt 267  Q
    |||||||||||||||||  ||||||| || || || |||||||||||||||||||||    
T  10595201 cacatttcttaagaaaagttgtcagtataattaatatgtctgttttgtgtgttaatt 10595145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 1324709 - 1324764
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||||   | |||||||| || |||||||||||||||||||||||    
T  1324709 cacatttcttaagaaatgttatcagtgtaattaatgtgtctgttttgtgtgttaat 1324764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 21801160 - 21801105
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||||  |||| || |||||||||||||||||||||||    
T  21801160 cacatttcttaagaaaagttgtcgatgtaattaatgtgtctgttttgtgtgttaat 21801105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 29636144 - 29636089
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||| |||||||||  ||||| |||| || |||||||||||||||||||||||    
T  29636144 cacattttttaagaaaagttgtcaatgtaattaatgtgtctgttttgtgtgttaat 29636089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 37673738 - 37673793
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||||   ||| |||||| || |||||||||||||||||||||||    
T  37673738 cacatttcttaagaaatgttgtgagtgtaattaatgtgtctgttttgtgtgttaat 37673793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 48193616 - 48193671
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||| |||||||||| ||| |||||| || |||||||| ||||||||||||||    
T  48193616 cacattttttaagaaaaattgttagtgtaattaatgtgtctattttgtgtgttaat 48193671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 48767565 - 48767620
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||| |||   |||||||||| || |||||||||||||||||||||||    
T  48767565 cacatttcttaaaaaacgttgtcagtgtaattaatgtgtctgttttgtgtgttaat 48767620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 10685089 - 10685141
Alignment:
Q  214 atttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||  | |||||||| || ||||||||||||| |||||||||    
T  10685089 atttcttaagaaaagttatcagtgtaattaatgtgtctgttttatgtgttaat 10685141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 40211378 - 40211326
Alignment:
Q  214 atttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||| |||||||||| |||  ||||| || |||||||||||||||||||||||    
T  40211378 attttttaagaaaaattgtttgtgtaattaatgtgtctgttttgtgtgttaat 40211326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 5536498 - 5536553
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||| |||||||||| || |||||||||||||| ||||||||    
T  5536498 cacatttcttaagaaaaattgtcagtgtaattaatgtgtctgttttgcgtgttaat 5536553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 20262498 - 20262443
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||||||||| || |||||||||||||||||||||||    
T  20262498 cacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaat 20262443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 16070432 - 16070487
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||||   |||||||||| || |||||||||||||||||||||||    
T  16070432 cacatttcttaagaaatgctgtcagtgtaattaatgtgtctgttttgtgtgttaat 16070487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 25477226 - 25477281
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||||||||| || ||||||||||||| |||||||||    
T  25477226 cacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttatgtgttaat 25477281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 30153326 - 30153271
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||||||||| || |||||||||||||||||| ||||    
T  30153326 cacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgataat 30153271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 50782779 - 50782834
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||||||||| || ||||||||||||||||| |||||    
T  50782779 cacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtcttaat 50782834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 51787772 - 51787827
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||| ||||| || |||||||||||||||||||||||    
T  51787772 cacatttcttaagaaaagttgtcggtgtaattaatgtgtctgttttgtgtgttaat 51787827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 29584895 - 29584950
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||| ||| |||||| || |||||||| || |||||||||||    
T  29584895 cacatttcttaagaaaaattgttagtgtaattaatgtgtctattctgtgtgttaat 29584950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 34543703 - 34543758
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||| ||||| || |||||||| ||||||||||||||    
T  34543703 cacatttcttaagaaaagttgtccgtgtaattaatgtgtctattttgtgtgttaat 34543758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 38136356 - 38136411
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||| |||||| || |||||||| ||||||||||||||    
T  38136356 cacatttcttaagaaaatttgttagtgtaattaatgtgtctattttgtgtgttaat 38136411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 39237693 - 39237638
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||| |||||||||  |||||||||| || |||| ||||||||||||||||||    
T  39237693 cacattttttaagaaaagttgtcagtgtaattaatgtatctgttttgtgtgttaat 39237638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 46729314 - 46729361
Alignment:
Q  219 ttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||  |||||||||| || |||||||||||||||||||||||    
T  46729314 ttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaat 46729361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 54438511 - 54438566
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||| |||| || || || | |||||||||||||||||||||    
T  54438511 cacatttcttaagaaaaattgtccgtataattaaagtgtctgttttgtgtgttaat 54438566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 24072769 - 24072823
Alignment:
Q  212 acatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||||  ||||| |||| || ||||||||||||| |||||||||    
T  24072769 acatttcttaagaaaagttgtcaatgtaattaatgtgtctgttttttgtgttaat 24072823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 19654429 - 19654481
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgtt 263  Q
    |||||||||||||||||| ||| |||||| || |||||||| |||| ||||||    
T  19654429 cacatttcttaagaaaaactgttagtgtaattaatgtgtctattttatgtgtt 19654481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 27297578 - 27297633
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||| ||| |||||| || |||||||||||||||||||||||    
T  27297578 cacatttcttaagaaaaactgttagtgtaattaatgtgtctgttttgtgtgttaat 27297633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 45214726 - 45214781
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||||||||| || |||||||||||||||||||||||    
T  45214726 cacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaat 45214781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 9718276 - 9718221
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||||   |||||||||| || |||||||||||||||||||||||    
T  9718276 cacatttcttaagaaatgttgtcagtgtaattaatgtgtctgttttgtgtgttaat 9718221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 20361984 - 20362039
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||| ||| ||||||||| |||||||| |||| |||||||||    
T  20361984 cacatttcttaagaaaaattgttagtgtagttaatgtgtctattttatgtgttaat 20362039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 35178897 - 35178842
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||||||||||||| |||||| ||||||||||| ||||    
T  35178897 cacatttcttaagaaaagttgtcagtgtagttaatgtgtatgttttgtgtgataat 35178842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 41665711 - 41665766
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||||   |||||||||| || |||||||||||||||||||||||    
T  41665711 cacatttcttaagaaatgttgtcagtgtaattaatgtgtctgttttgtgtgttaat 41665766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 44421450 - 44421505
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||| |||||||||| || |||| |||||||||| |||||||    
T  44421450 cacatttcttaagaaaaattgtcagtgtaattaatgtatctgttttgtttgttaat 44421505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 43650036 - 43650090
Alignment:
Q  212 acatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||| ||||||| |||||||||| || ||||||||||||||| |||||||    
T  43650036 acatttctttagaaaaattgtcagtgtaattaatgtgtctgttttgtatgttaat 43650090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 8065176 - 8065121
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||| |||||||   |||||||||| || |||||||||||||||||||||||    
T  8065176 cacatttcctaagaaatgttgtcagtgtaattaatgtgtctgttttgtgtgttaat 8065121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 13534415 - 13534470
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||||   |||||||||| || |||||| ||||||||||||||||    
T  13534415 cacatttcttaagaaatgttgtcagtgtaattaatgtgtttgttttgtgtgttaat 13534470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 15851532 - 15851587
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||| |||||| || ||||||||||||| |||||||||    
T  15851532 cacatttcttaagaaaagttgtgagtgtaattaatgtgtctgttttttgtgttaat 15851587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 27749513 - 27749568
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||||||||| || || |||||||||||||| |||||    
T  27749513 cacatttcttaagaaaagttgtcagtgtaattaatatgtctgttttgtgtattaat 27749568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 28265055 - 28265000
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||||||||| || |||||| ||||||||| ||||||    
T  28265055 cacatttcttaagaaaagttgtcagtgtaattaatgtgtttgttttgtgcgttaat 28265000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 44424596 - 44424651
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||| |||||| || ||||||||||||||| |||||||    
T  44424596 cacatttcttaagaaaagttgttagtgtaattaatgtgtctgttttgtatgttaat 44424651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 16582533 - 16582588
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||||||||| || |||||||||||||||||||||||    
T  16582533 cacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaat 16582588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 30898666 - 30898611
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||| |||||||||| || ||||||||||||| |||||||||    
T  30898666 cacatttcttaagaaaaattgtcagtgtaattaatgtgtctgttttatgtgttaat 30898611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 48721971 - 48721916
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||||||||| || |||||||||||||||||||||||    
T  48721971 cacatttcttaagaaaagctgtcagtgtaattaatgtgtctgttttgtgtgttaat 48721916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 28334318 - 28334265
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgtta 264  Q
    |||||||||||||||||  |||||||||| || |||||||||||||||||||||    
T  28334318 cacatttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgtta 28334265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 5085192 - 5085137
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||| |||||||||  |||||||||| || |||||||||||||||||||||||    
T  5085192 cacattttttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaat 5085137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 23982695 - 23982640
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||||| |||| || |||||||||||||||||||||||    
T  23982695 cacatttcttaagaaaagttgtcaatgtaattaatgtgtctgttttgtgtgttaat 23982640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 32047442 - 32047497
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||||||||| || |||||| ||||||||||||||||    
T  32047442 cacatttcttaagaaaagttgtcagtgtaattaatgtgtttgttttgtgtgttaat 32047497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 33231840 - 33231895
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||| ||||  |||||||||| || |||||||||||||||||||||||    
T  33231840 cacatttcttaaaaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaat 33231895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 44335289 - 44335344
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||| ||||  |||||||||| || |||||||||||||||||||||||    
T  44335289 cacatttcttaataaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaat 44335344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 3143403 - 3143458
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||||| |||| || ||||||||| |||||||||||||    
T  3143403 cacatttcttaagaaaagttgtcattgtaattaatgtgtctgctttgtgtgttaat 3143458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 8984764 - 8984709
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||| ||||| |||| ||| |||||| || |||||||||||||||||||||||    
T  8984764 cacattttttaaggaaaattgttagtgtaattaatgtgtctgttttgtgtgttaat 8984709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 15512884 - 15512829
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||| ||||||||| |||||||| |||| |||||||||    
T  15512884 cacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaat 15512829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 15911655 - 15911600
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||| |||||| || |||||||| ||||||||||||||    
T  15911655 cacatttcttaagaaaagttgttagtgtacttaatgtgtctattttgtgtgttaat 15911600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 27531099 - 27531154
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||||||| || || |||||| ||||||||||||||||    
T  27531099 cacatttcttaagaaaagttgtcagtataattaatgtgtttgttttgtgtgttaat 27531154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 28949067 - 28949012
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||| ||||||||| |||||||| |||| |||||||||    
T  28949067 cacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaat 28949012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 30336059 - 30336114
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||| ||||| || |||||||| ||||||||||||||    
T  30336059 cacatttcttaagaaaagttgtcggtgtaattaatgtgtctattttgtgtgttaat 30336114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 34696986 - 34696931
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||| |||||||||  |||||||||| || || ||||||||||||||||||||    
T  34696986 cacattttttaagaaaagttgtcagtgtaattaatatgtctgttttgtgtgttaat 34696931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 36084970 - 36085025
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||| |||||||||| | |||||||| || |||| ||||||||||||||||||    
T  36084970 cacattttttaagaaaaattatcagtgtaattaatgtatctgttttgtgtgttaat 36085025  T

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Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 38680475 - 38680530
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||| |||||| || |||||||| ||||||||||||||    
T  38680475 cacatttcttaagaaaagttgttagtgtaattaatgtgtctattttgtgtgttaat 38680530  T

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Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 46495309 - 46495364
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||| | || ||||| |||||||||| || |||||||||||||||||||||||    
T  46495309 cacatttttaaaaaaaaattgtcagtgtaattaatgtgtctgttttgtgtgttaat 46495364  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 15179410 - 15179455
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgtttt 256  Q
    |||||||||||||||||| |||||||||| || |||||||| ||||    
T  15179410 cacatttcttaagaaaaattgtcagtgtaattaatgtgtctatttt 15179455  T

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Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 47643542 - 47643591
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgt 260  Q
    |||||||||||||||||  |||||||||| || |||||| ||||||||||    
T  47643542 cacatttcttaagaaaagttgtcagtgtaattaatgtgtatgttttgtgt 47643591  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 8877775 - 8877827
Alignment:
Q  214 atttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||| |||||||||| ||||||| || || |||||| ||||||||||||||||    
T  8877775 attttttaagaaaaattgtcagtataattaatgtgtttgttttgtgtgttaat 8877827  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 34102339 - 34102391
Alignment:
Q  214 atttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||| |||||||||| | ||| |||| || |||||||||||||||||||||||    
T  34102339 attttttaagaaaaattttcattgtaattaatgtgtctgttttgtgtgttaat 34102391  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 15898562 - 15898511
Alignment:
Q  215 tttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||  |||||||||| || |||||||||||||||||||||||    
T  15898562 tttcttaagaaaagttgtcagtgtaattaatgtgtctgttttgtgtgttaat 15898511  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 27587839 - 27587894
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||||||| || || |||||||||||||||||||||||    
T  27587839 cacatttcttaagaaaagttgtcagtataattaatgtgtctgttttgtgtgttaat 27587894  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 4738631 - 4738686
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||| | |||||||||| || |||| | ||||||||||||||||    
T  4738631 cacatttcttaagaaatattgtcagtgtaattaatgtatttgttttgtgtgttaat 4738686  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 25690792 - 25690737
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  |||| ||||| || |||||| ||||||||||||||||    
T  25690792 cacatttcttaagaaaagttgtcggtgtaattaatgtgtatgttttgtgtgttaat 25690737  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 27642503 - 27642558
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||| ||||||||| |||||||| |||| |||||||||    
T  27642503 cacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaat 27642558  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 27798157 - 27798212
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||| |||||||| | |||||||||| || || ||||||||||||||||||||    
T  27798157 cacattttttaagaaatattgtcagtgtaattaatttgtctgttttgtgtgttaat 27798212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 34877667 - 34877722
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||||   |||||||||| || || ||||||||||||||||||||    
T  34877667 cacatttcttaagaaatgttgtcagtgtaattaatttgtctgttttgtgtgttaat 34877722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 39690589 - 39690534
Alignment:
Q  211 cacatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||||||||||||||||  ||| ||||||||| |||||||| |||| |||||||||    
T  39690589 cacatttcttaagaaaagttgttagtgtagttaatgtgtctattttatgtgttaat 39690534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 36177294 - 36177348
Alignment:
Q  212 acatttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    ||||||||||||||||  | |||||||| || |||||||| ||||||||||||||    
T  36177294 acatttcttaagaaaagttatcagtgtaattaatgtgtctattttgtgtgttaat 36177348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 266
Target Start/End: Complemental strand, 10523374 - 10523322
Alignment:
Q  214 atttcttaagaaaaaatgtcagtgtagttgatgtgtctgttttgtgtgttaat 266  Q
    |||| |||||||||  | |||||||| || |||||||||||||||||||||||    
T  10523374 attttttaagaaaagttatcagtgtaattaatgtgtctgttttgtgtgttaat 10523322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 33862919 - 33862871
Alignment:
Q  211 cacatttctt-aagaaaaaatgtcagtgtagttgatgtgtctgttttgt 258  Q
    |||||||||| |||||||| |||||||||| || |||||||||||||||    
T  33862919 cacatttctttaagaaaaattgtcagtgtaattaatgtgtctgttttgt 33862871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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