View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9459_low_20 (Length: 268)
Name: NF9459_low_20
Description: NF9459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9459_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 9646367 - 9646618
Alignment:
| Q |
1 |
cattactgaaaattataaaagcaattgacatttgtatatgtttcgggaacaacgagaatattgcaaaaagaaattagtactatacaaaagaatggtctcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9646367 |
cattactgaaaattataaaagcaattgacatttgtatatgtttccggaacaacgagaatattgcaaaaagaaattagtactatacaaaagaatggtctcc |
9646466 |
T |
|
| Q |
101 |
aaaaaattgtctaatattcactacttaagagttaacgaaccgacaaaatggcgaaccctagctaaaaaactttaattggaaaatcttctccaatacccat |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
9646467 |
aaaaacttgtctaatattcactacttaagagttaacgaaccgacaaaatggcgaaccctagctaaaaaactttaattggaaaatcttctccaatacgcgt |
9646566 |
T |
|
| Q |
201 |
caaattgtatcaaacatgtatcagttgcaaatacgtatcggacacatatact |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9646567 |
caaattgtatcaaacatgtatcagttgcaaatacgtatcggacacatatact |
9646618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University