View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9459_low_24 (Length: 261)
Name: NF9459_low_24
Description: NF9459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9459_low_24 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 31793326 - 31793073
Alignment:
| Q |
1 |
aaatcgcccatgtctcaacaaagcctcatctattgactcgtgagagttagtagcaccaatcacaattatgccttcattttgtttgagtccatctaactca |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
31793326 |
aaatcgcccgtgtctcaacaaagcctcatctattgactcgtgagagttagtagcaccaatcacaattatgccttcattttgttcgagtccatctaactca |
31793227 |
T |
|
| Q |
101 |
acaagcatttgatttaaagtcaacttcgtgtacatctggtcatttgaatttgattttccaccaataacatcaatctcatcaataaagattatagaaggcg |
200 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||| |||| ||||| ||||| ||||||||||||| |||||||||||||||||||||||||| || | | |
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|
| T |
31793226 |
acaagcatttgatataaagtcaacttcgagtacatttggtaatttggatttggttttccaccaatagcatcaatctcatcaataaagattatacaatgtg |
31793127 |
T |
|
| Q |
201 |
cacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaa |
254 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31793126 |
cacgtttttttgcagcagcaaaaagatctctcaccctttgtgcaccaacaccaa |
31793073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 32013448 - 32013195
Alignment:
| Q |
1 |
aaatcgcccatgtctcaacaaagcctcatctattgactcgtgagagttagtagcaccaatcacaattatgccttcattttgtttgagtccatctaactca |
100 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32013448 |
aaatctcccatgtctcaacaaagccttatctattgactcgggagagttagtagcaccaatcacaattatgccttcattttgtttgaaaccatctaactca |
32013349 |
T |
|
| Q |
101 |
acaagcatttgatttaaagtcaacttcgtgtacatctggtcatttgaatttgattttccaccaataacatcaatctcatcaataaagattatagaaggcg |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||| |||||| |
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|
| T |
32013348 |
acaagcaactgatttaaagtcaacttcgtgtacatttggtcatttgaatttggttttccaccaatagcatcaatctcatcaagaaagattatacaaggcg |
32013249 |
T |
|
| Q |
201 |
cacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaa |
254 |
Q |
| |
|
||| |||||||||||| |||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
32013248 |
cacgcttttttgcagcagcaaaaagatttctcaccctttgtgcaccaacaccaa |
32013195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 32024857 - 32024604
Alignment:
| Q |
1 |
aaatcgcccatgtctcaacaaagcctcatctattgactcgtgagagttagtagcaccaatcacaattatgccttcattttgtttgagtccatctaactca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32024857 |
aaatcgcccatgtctcaacaaagcctcatctattaacttgtgagacttagtagcaccaatcacaattatgccttcattttgtttgagtccatctaactca |
32024758 |
T |
|
| Q |
101 |
acaagcatttgatttaaagtcaacttcgtgtacatctggtcatttgaatttgattttccaccaataacatcaatctcatcaataaagattatagaaggcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
32024757 |
acaagcatttgatttaaagtcaacttcatgtacatttggtcgtttgaatttagttttccaccaaacgcatcaatctcatcaataaagattatacaaggca |
32024658 |
T |
|
| Q |
201 |
cacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaa |
254 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
32024657 |
accgtttttttgcagcagcaaaaagatctctcaccctttgtgcaccaacaccaa |
32024604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 8e-70; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 48113094 - 48113347
Alignment:
| Q |
1 |
aaatcgcccatgtctcaacaaagcctcatctattgactcgtgagagttagtagcaccaatcacaattatgccttcattttgtttgagtccatctaactca |
100 |
Q |
| |
|
|||||||||| |||| | |||||||| ||||| |||||| || | |||||||||||||||||||||||||| || |||||||||| |||||||||||| |
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|
| T |
48113094 |
aaatcgcccaggtctaaccaaagccttatctagtgactcaggaaaattagtagcaccaatcacaattatgccatcgttttgtttgaaaccatctaactca |
48113193 |
T |
|
| Q |
101 |
acaagcatttgatttaaagtcaacttcgtgtacatctggtcatttgaatttgattttccaccaataacatcaatctcatcaataaagattatagaaggcg |
200 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| || || |||| |||| ||||||||||||| |||||||||| ||||||||||||||| |||||| |
|
|
| T |
48113194 |
acaagcatttgatttaaagtcatcttcatgtacatttgatcctttgcatttcgttttccaccaatagcatcaatctcgtcaataaagattatacaaggcg |
48113293 |
T |
|
| Q |
201 |
cacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaa |
254 |
Q |
| |
|
| |||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48113294 |
accgcttttttgcagcagcaaaaagatctctcacccttcgtgcaccaacaccaa |
48113347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 48131998 - 48132251
Alignment:
| Q |
1 |
aaatcgcccatgtctcaacaaagcctcatctattgactcgtgagagttagtagcaccaatcacaattatgccttcattttgtttgagtccatctaactca |
100 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||| ||| | | ||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48131998 |
aaatcgcccaggtctcaccaaagccttatctagtgattgaggtaagttagtagcagcaagcacaattatgccttcattttgtttgaatccatctaactca |
48132097 |
T |
|
| Q |
101 |
acaagcatttgatttaaagtcaacttcgtgtacatctggtcatttgaatttgattttccaccaataacatcaatctcatcaataaagattatagaaggcg |
200 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| ||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||| |||| | |
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|
| T |
48132098 |
acaagcatttgatttaaagtcatcttcatgtacatttggtcttttgcgtttcgttttccaccaatagcatcaatctcatcaataaagattatacaaggag |
48132197 |
T |
|
| Q |
201 |
cacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaa |
254 |
Q |
| |
|
| |||||||||||| ||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
48132198 |
accgcttttttgcagcagcaaaaagatctcgcacccttcgtgcaccaacaccaa |
48132251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 47 - 250
Target Start/End: Complemental strand, 48141818 - 48141615
Alignment:
| Q |
47 |
ttagtagcaccaatcacaattatgccttcattttgtttgagtccatctaactcaacaagcatttgatttaaagtcaacttcgtgtacatctggtcatttg |
146 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||| |||||| | ||||| |||||||||||||||||| | | ||| ||| | || | |
|
|
| T |
48141818 |
ttagtagcaccaatcacaattatgccatcgttttgtttgaatccatcgagctcaaagagcatttgatttaaagtctgccacatgttcattttatcctcat |
48141719 |
T |
|
| Q |
147 |
aatttgattttccaccaataacatcaatctcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcacc |
246 |
Q |
| |
|
| | ||||| |||||| ||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48141718 |
tacctcgttttctaccaattgaatcaatctcatcaataaagattatacaaggtgacttcttttttgcagcggcaaaaagatctctcacccttcgtgcacc |
48141619 |
T |
|
| Q |
247 |
aaca |
250 |
Q |
| |
|
|||| |
|
|
| T |
48141618 |
aaca |
48141615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 43871884 - 43871926
Alignment:
| Q |
160 |
accaataacatcaatctcatcaataaagattatagaaggcgca |
202 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43871884 |
accaatagcatcaatctcatcaacaaagattatagaaggcgca |
43871926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 47 - 250
Target Start/End: Complemental strand, 25254390 - 25254187
Alignment:
| Q |
47 |
ttagtagcaccaatcacaattatgccttcattttgtttgagtccatctaactcaacaagcatttgatttaaagtcaacttcgtgtacatctggtcatttg |
146 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||| |||||| | ||||| |||||||||||||||||| | | ||| ||| | || | |
|
|
| T |
25254390 |
ttagtagcaccaatcacaattatgccatcgttttgtttgaatccatcgagctcaaagagcatttgatttaaagtctgccacatgttcattttatcctcat |
25254291 |
T |
|
| Q |
147 |
aatttgattttccaccaataacatcaatctcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcacc |
246 |
Q |
| |
|
| | ||||| |||||| ||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25254290 |
tacctcgttttctaccaattgaatcaatctcatcaataaagattatacaaggtgacttcttttttgcagcggcaaaaagatctctcacccttcgtgcacc |
25254191 |
T |
|
| Q |
247 |
aaca |
250 |
Q |
| |
|
|||| |
|
|
| T |
25254190 |
aaca |
25254187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 172 - 254
Target Start/End: Original strand, 25242616 - 25242698
Alignment:
| Q |
172 |
aatctcatcaataaagattatagaaggcgcacacttttttgcagcggcaaaaagatctctcaccctatgtgcaccaacaccaa |
254 |
Q |
| |
|
|||||||||||||||||||||| |||| | | |||||||||||| ||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
25242616 |
aatctcatcaataaagattatacaaggagaccgcttttttgcagcagcaaaaagatctcgcacccttcgtgcaccaacaccaa |
25242698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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