View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9459_low_28 (Length: 250)
Name: NF9459_low_28
Description: NF9459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9459_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 33304676 - 33304912
Alignment:
| Q |
1 |
tggcagtggctttgaaaccaaagcacaaacagcatttcatcaatggttccttaccaagaccttcaaattatgatcatgattctatagcttgggataggtg |
100 |
Q |
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| T |
33304676 |
tggcagtggctttgaaaccaaagcacaaacagcatttcatcaatggttccttaccaagacctccaaattatgatcatgattctatagcttgggataggtg |
33304775 |
T |
|
| Q |
101 |
taataccatgatcatttcatggctcaacaactctgttgattctgaaatatcttagagtatcctatggatggacactgcttctaaaatttggaaagaactc |
200 |
Q |
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| T |
33304776 |
taataccatgatcatttcatggctcaacaaatctgttgatcctgaaatatc--agagtatcctatggatggacactgcttctaaaatttggaaagaactc |
33304873 |
T |
|
| Q |
201 |
aaggatagattctatcaaggtgatatttttaggatctct |
239 |
Q |
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| T |
33304874 |
aaggatagattctatcaaggtgatatttttaggatctct |
33304912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 30869345 - 30869579
Alignment:
| Q |
7 |
tggctttgaaaccaaagcacaaacagcatttcatcaatggttccttaccaagaccttcaaattatgatcatgattctatagcttgggataggtgtaatac |
106 |
Q |
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| T |
30869345 |
tggctttgatatcaaagcacaaactgcatttcatcaatggttccttgccaagacccccagataaataccatgactctatagcttggaataggtgtaatac |
30869444 |
T |
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| Q |
107 |
catgatcatttcatggctcaacaactctgttgattctgaaatatcttagagtatcctatggatggacactgcttctaaaatttggaaagaactcaaggat |
206 |
Q |
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| T |
30869445 |
catgatcatgtcatgacttagtaactctgttgatcctgaaatatctcagagtatactgtggatggatacagcctatgaaatttggaaagagctcaaagat |
30869544 |
T |
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| Q |
207 |
a-gattctatcaaggtgatatttttaggatctctg |
240 |
Q |
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| T |
30869545 |
aggtttctatcaaggtgatattttcaggatctctg |
30869579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 29350429 - 29350631
Alignment:
| Q |
36 |
ttcatcaatggttccttaccaagaccttcaaattatgatcatgattctatagcttgggataggtgtaataccatgatcatttcatggctcaacaactctg |
135 |
Q |
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| T |
29350429 |
ttcataaatggcaccttaccaagaccttcatatgaagatcatggttctatagcttggaatagacccaacgccatgatcatgccatggcttaacaactctg |
29350528 |
T |
|
| Q |
136 |
ttgattctgaaatatcttagagtatcctatggatggacactgcttctaaaatttggaaagaactcaaggatagattctatcaaggtgatatttttaggat |
235 |
Q |
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| T |
29350529 |
ttgatcctgcaatctctaagagtatcttagggatggatattgcgtctgagatttcgaaagaacccaaagatatattctat--aggtgatatctttaggat |
29350626 |
T |
|
| Q |
236 |
ctctg |
240 |
Q |
| |
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||||| |
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| T |
29350627 |
ctctg |
29350631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 226
Target Start/End: Original strand, 15027858 - 15028057
Alignment:
| Q |
27 |
aaacagcatttcatcaatggttccttaccaagaccttcaaattatgatcatgattctatagcttgggataggtgtaataccatgatcatttcatggctca |
126 |
Q |
| |
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|||| |||||||||||||||| | | |||||||| | || ||||||||||||| |||||||||||| | || || || ||||| || || ||| | | |
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| T |
15027858 |
aaactgcatttcatcaatggtgcgcttccaagaccgtgtgatgatgatcatgattcaatagcttgggatcgttgcaacacgatgataatgtcttggttaa |
15027957 |
T |
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| Q |
127 |
acaactctgttgattctgaaatatcttagagtatcctatggatggacactgcttctaaaatttggaaagaactcaaggatagattctatcaaggtgatat |
226 |
Q |
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||| ||||||||| || |||| || |||| ||| |||||||||| ||||| | |||| ||||| |||||||| || ||||| |||||||||||||| |
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| T |
15027958 |
gcaattctgttgatcctcaaatttcccagagcatcttatggatggatactgcattagaaatatggaatgaactcaaagaaagattttatcaaggtgatat |
15028057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 43573699 - 43573901
Alignment:
| Q |
21 |
aagcacaaacagcatttcatcaatggttccttaccaagaccttcaaattatgatcatgattctatagcttgggataggtgtaataccatgatcatttcat |
120 |
Q |
| |
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||||| |||| |||||||||||||||| | | |||||||| | || ||||||||||||| |||||||||||| | || || || ||||| || || | |
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| T |
43573699 |
aagcataaactgcatttcatcaatggtgcgcttccaagaccgtgtgatgatgatcatgattcaatagcttgggatcgctgcaacacgatgataatgtctt |
43573798 |
T |
|
| Q |
121 |
ggctcaacaactctgttgattctgaaatatcttagagtatcctatggatggacactgcttctaaaatttggaaagaactcaaggatagattctatcaagg |
220 |
Q |
| |
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|| | | ||| || |||||| ||||||| ||| |||| ||| |||||||||| ||||| | |||| ||||| ||||| || || || ||||||||||| |
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| T |
43573799 |
ggttaagcaattccgttgatcctgaaatttctcagagcatcttatggatggatactgcattagaaatctggaatgaactaaaagaaaggttctatcaagg |
43573898 |
T |
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| Q |
221 |
tga |
223 |
Q |
| |
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||| |
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| T |
43573899 |
tga |
43573901 |
T |
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