View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9459_low_29 (Length: 250)

Name: NF9459_low_29
Description: NF9459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9459_low_29
NF9459_low_29
[»] chr4 (6 HSPs)
chr4 (1-244)||(25189391-25189632)
chr4 (36-119)||(25160357-25160440)
chr4 (64-120)||(25039025-25039081)
chr4 (58-137)||(25168899-25168978)
chr4 (64-120)||(25017872-25017928)
chr4 (37-137)||(25180567-25180667)
[»] chr3 (1 HSPs)
chr3 (41-142)||(9213385-9213486)
[»] chr2 (3 HSPs)
chr2 (35-120)||(42157012-42157097)
chr2 (35-120)||(42290323-42290408)
chr2 (50-120)||(42167510-42167580)
[»] chr5 (1 HSPs)
chr5 (67-129)||(30360639-30360701)


Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 25189632 - 25189391
Alignment:
Q  1 aaacaatcatatgcaattataatatatgtcgatgatattgtaggtataaaaccgttcgtaactctttttcattgggatcttccccaagtcttagaagacg 100  Q
    |||||||||||| |  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25189632 aaacaatcatatac--ttataatatatgtcgatgatactgtaggtataaaaccgttcgtaactctttttcattgggatcttccccaagtcttagaagacg 25189535  T
Q  101 agtatggtggtttcttaagctctcgcataatgtgagtctccatttcaaatatcatttgcctaacatagcgattcaacgtgtagatgattataatttggtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25189534 agtatggtggtttcttaagctctcgcataatgtgagtctccatttcaaatatcatttgcctaacattgcgattcaacgtgtagatgattataatttggtt 25189435  T
Q  201 aatgttttagaaatgattttcgagactatgctgatctctgcttc 244  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  25189434 aatgttttagaaatgattttcgagactatgctgatctttgcttc 25189391  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 25160440 - 25160357
Alignment:
Q  36 tattgtaggtataaaaccgttcgtaactctttttcattgggatcttccccaagtcttagaagacgagtatggtggtttcttaag 119  Q
    ||||| ||||||| |||| || || |||||||| |||||||||||||| |||   |||||||| ||||||||||| ||||||||    
T  25160440 tattgcaggtatacaaccattagtgactcttttccattgggatcttcctcaaactttagaagaagagtatggtggcttcttaag 25160357  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 25039081 - 25039025
Alignment:
Q  64 ctttttcattgggatcttccccaagtcttagaagacgagtatggtggtttcttaagc 120  Q
    ||||| |||||||||||||||||||| ||| ||||||||||  | ||||||||||||    
T  25039081 cttttccattgggatcttccccaagttttacaagacgagtacagcggtttcttaagc 25039025  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 25168978 - 25168899
Alignment:
Q  58 gtaactctttttcattgggatcttccccaagtcttagaagacgagtatggtggtttcttaagctctcgcataatgtgagt 137  Q
    |||||||||||||||||||||||||| |||    ||||||| || ||||| |||||||||||  ||| ||| ||||||||    
T  25168978 gtaactctttttcattgggatcttcctcaaactctagaagatgaatatggcggtttcttaagtcctctcatcatgtgagt 25168899  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 25017928 - 25017872
Alignment:
Q  64 ctttttcattgggatcttccccaagtcttagaagacgagtatggtggtttcttaagc 120  Q
    |||||||| |||||||||||||||| | || ||||||||||  |||| |||||||||    
T  25017928 ctttttcactgggatcttccccaagccctacaagacgagtacagtggcttcttaagc 25017872  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 137
Target Start/End: Complemental strand, 25180667 - 25180567
Alignment:
Q  37 attgtaggtataaaaccgttcgtaactctttttcattgggatcttccccaagtcttagaagacgagtatggtggtttcttaagctctcgcataatgtgag 136  Q
    |||| |||| || |||| || |||||||||||||||||||||||||| |||    ||||||| || ||||| || ||||||||  ||| ||| |||||||    
T  25180667 attgcaggtttacaaccatttgtaactctttttcattgggatcttcctcaaactctagaagatgaatatggcggcttcttaagtcctctcatcatgtgag 25180568  T
Q  137 t 137  Q
    |    
T  25180567 t 25180567  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 9213385 - 9213486
Alignment:
Q  41 taggtataaaaccgttcgtaactctttttcattgggatcttccccaagtcttagaagacgagtatggtggtttcttaagctctcgcataatgtgagtctc 140  Q
    ||||||||||||| || || |||||||||||||||||||| || |||    ||||||| ||||||||||| ||||||||| ||| |||| ||||||| ||    
T  9213385 taggtataaaaccattggtgactctttttcattgggatctcccacaaactctagaagatgagtatggtggcttcttaagccctctcatagtgtgagtttc 9213484  T
Q  141 ca 142  Q
    ||    
T  9213485 ca 9213486  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 42157097 - 42157012
Alignment:
Q  35 atattgtaggtataaaaccgttcgtaactctttttcattgggatcttccccaagtcttagaagacgagtatggtggtttcttaagc 120  Q
    ||||||||||| || |||| ||||||||| | ||||||||||||||||| |||   ||||| ||||||||||| || |||||||||    
T  42157097 atattgtaggtctacaaccattcgtaactttatttcattgggatcttcctcaaactttagaggacgagtatggcggcttcttaagc 42157012  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 42290323 - 42290408
Alignment:
Q  35 atattgtaggtataaaaccgttcgtaactctttttcattgggatcttccccaagtcttagaagacgagtatggtggtttcttaagc 120  Q
    ||||||||||| || |||| ||||||||| | ||||||||||||||||| ||||  |||||  |||||||||| || |||||||||    
T  42290323 atattgtaggtctacaaccattcgtaactttatttcattgggatcttcctcaagctttagagaacgagtatggcggcttcttaagc 42290408  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 42167580 - 42167510
Alignment:
Q  50 aaccgttcgtaactctttttcattgggatcttccccaagtcttagaagacgagtatggtggtttcttaagc 120  Q
    |||| ||||||||||| ||||||||||||||||| ||||  ||||| || |||||| |||| |||||||||    
T  42167580 aaccattcgtaactctatttcattgggatcttcctcaagctttagaggatgagtatagtggcttcttaagc 42167510  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 30360639 - 30360701
Alignment:
Q  67 tttcattgggatcttccccaagtcttagaagacgagtatggtggtttcttaagctctcgcata 129  Q
    |||||||||||||| || |||| ||| |||||||||||||| |||||||||||  ||||||||    
T  30360639 tttcattgggatctaccacaagccttggaagacgagtatggaggtttcttaagtcctcgcata 30360701  T

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