View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9459_low_33 (Length: 244)
Name: NF9459_low_33
Description: NF9459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9459_low_33 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 43666145 - 43665921
Alignment:
| Q |
20 |
tgtccgagttcactaacggcgataaagtgcgccttttgccaaagtgtaaccatggatttcatgttcgttgcattgacaaatggctaagttcgcattcgtc |
119 |
Q |
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| T |
43666145 |
tgtcggagttcactaacggcgataaagtgcgccttttgccaaagtgtaaccatggatttcatgttcgttgcattgacaaatggctaagttcgcattcgtc |
43666046 |
T |
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| Q |
120 |
ttgtccgaaatgtagacagtgccttattgaaacttgtaacaaaattgttgggtcacaaggtagttcatcccaaccacaacctatgttgtttccggtgccc |
219 |
Q |
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| T |
43666045 |
ttgtccgaaatgtagacagtgccttattgaaacttgtaacaaaattgttgggtcacaaggtagttcatcccaaccacaacctatgttgtttccggtgccc |
43665946 |
T |
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| Q |
220 |
gaaacaattgtaactatagcaccac |
244 |
Q |
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| T |
43665945 |
gaaacaattgtaactatagcaccac |
43665921 |
T |
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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 38840927 - 38840846
Alignment:
| Q |
25 |
gagttcactaacggcgataaagtgcgccttttgccaaagtgtaaccatggatttcatgttcgttgcattgacaaatggctaa |
106 |
Q |
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| T |
38840927 |
gagttcacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcatgttcgttgcattgacaaatggctaa |
38840846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 38850977 - 38851058
Alignment:
| Q |
25 |
gagttcactaacggcgataaagtgcgccttttgccaaagtgtaaccatggatttcatgttcgttgcattgacaaatggctaa |
106 |
Q |
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| T |
38850977 |
gagttcacaaagggtgaaaaattgcgcattttgcctaaatgcaaccatggatttcatgttcgttgcattgacaaatggctaa |
38851058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 38858665 - 38858584
Alignment:
| Q |
25 |
gagttcactaacggcgataaagtgcgccttttgccaaagtgtaaccatggatttcatgttcgttgcattgacaaatggctaa |
106 |
Q |
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| T |
38858665 |
gagttcacaaagggtgaaaaggtgcgcattttgcctaaatgcaaccatggatttcatgttcgttgcattgacaaatggctaa |
38858584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 38861539 - 38861458
Alignment:
| Q |
25 |
gagttcactaacggcgataaagtgcgccttttgccaaagtgtaaccatggatttcatgttcgttgcattgacaaatggctaa |
106 |
Q |
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| T |
38861539 |
gagttcacaaagggtgaaaaattgcgcattttgcctaaatgcaaccatggatttcatgttcgttgcattgacaaatggctaa |
38861458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 38864973 - 38864913
Alignment:
| Q |
46 |
gtgcgccttttgccaaagtgtaaccatggatttcatgttcgttgcattgacaaatggctaa |
106 |
Q |
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| T |
38864973 |
gtgcgcattttgcctaaatgcaaccatggatttcacgttcgttgcattgacaaatggctaa |
38864913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 38827118 - 38827058
Alignment:
| Q |
46 |
gtgcgccttttgccaaagtgtaaccatggatttcatgttcgttgcattgacaaatggctaa |
106 |
Q |
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| T |
38827118 |
gtgcgcattttgcctaaatgcaatcatggtttccatgttcgttgcatcgacaaatggctaa |
38827058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 38846726 - 38846666
Alignment:
| Q |
46 |
gtgcgccttttgccaaagtgtaaccatggatttcatgttcgttgcattgacaaatggctaa |
106 |
Q |
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| T |
38846726 |
gtgcgcattttgcctaaatgcaatcatggtttccatgttcgttgcatcgacaaatggctaa |
38846666 |
T |
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