View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9459_low_34 (Length: 241)
Name: NF9459_low_34
Description: NF9459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9459_low_34 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 38 - 241
Target Start/End: Complemental strand, 31793542 - 31793340
Alignment:
| Q |
38 |
tatccagcagacacctgaacaaagcttaaggaaatcatactacacaatgctttgcaccaatatactacatgcactgcacacgtgcctnnnnnnn-ttatt |
136 |
Q |
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| T |
31793542 |
tatccagcagacacctgaacatagcttaaggaaatcatactacacaattctttgcaccaatatagtacaagcagtgcacaagtgcttcaaaaaaattctt |
31793443 |
T |
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| Q |
137 |
aagccatccaacccaagataaatatttttcacgagtaaaagcatacctttgacatgtgatattccaaaatctctcgccgtccttttctatctggtatggg |
236 |
Q |
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| T |
31793442 |
aagccatc--acccaagataaatatttttcaagagtaaaagcatacctttgacatgtgatattcaaaaatctccagccatccttttctatctggtatggg |
31793345 |
T |
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| Q |
237 |
aacat |
241 |
Q |
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||||| |
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| T |
31793344 |
aacat |
31793340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 240
Target Start/End: Complemental strand, 32013670 - 32013463
Alignment:
| Q |
38 |
tatccagcagacacctgaacaaagcttaaggaaatcatactacacaatgctttgcaccaatatactacatgcactgcacacgtgcctnnnnnnnttatta |
137 |
Q |
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| T |
32013670 |
tatccagcacacacctgaacatagctgaaggaaatcatacaacacaatgcttt-caccaatatagtgcaagcactggacacgtgcctcaaaa--ttctta |
32013574 |
T |
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| Q |
138 |
agccatccaacccaagata--------aatatttttcacgagtaaaagcatacctttgacatgtgatattccaaaatctctcgccgtccttttctatctg |
229 |
Q |
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| T |
32013573 |
agccatccaacccaagatacaaaataaaatatttttcaagagtaaaagcatacctttgacatgtgagattccaaaatctctcgccgtccttttacatctg |
32013474 |
T |
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| Q |
230 |
gtatgggaaca |
240 |
Q |
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| T |
32013473 |
gattgggaaca |
32013463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 32034964 - 32034854
Alignment:
| Q |
18 |
ggtgttaggcagttagctcat-------atccagcagacacctgaacaaagcttaaggaaatcatactacacaatgctttgcaccaatatactacatgca |
110 |
Q |
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| T |
32034964 |
ggtgttaggcagttagctcatgtgaagtatccagcagacacctgaacaaagcttaaggaaatcatactacacaatgctttgcaccaatatagtacatgca |
32034865 |
T |
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| Q |
111 |
ctgcacacgtg |
121 |
Q |
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| T |
32034864 |
ctgcacacgtg |
32034854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 135 - 220
Target Start/End: Complemental strand, 32024976 - 32024892
Alignment:
| Q |
135 |
ttaagccatccaacccaagataaatatttttcacgagtaaaagcatacctttgacatgtgatattccaaaatctctcgccgtcctt |
220 |
Q |
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| T |
32024976 |
ttaagccatccaacccaagataa-tatttttcaagagtaaaagcatacctttgacatgtgatattccaaaatctctcgccgtcctt |
32024892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 48112889 - 48112952
Alignment:
| Q |
60 |
agcttaaggaaatcatactacacaatgctttgcaccaatatactacatgcactgcacacgtgcct |
124 |
Q |
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| T |
48112889 |
agcttgaggaaatcatactacacaatgctttgcaccaatatagtgcaagc-ctgcacacgtgcct |
48112952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 48123961 - 48124051
Alignment:
| Q |
38 |
tatccagcagacacctgaacaaagcttaaggaaatcatactacacaatgctttg----caccaatatactacatgcactgcacacgtgcct |
124 |
Q |
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| T |
48123961 |
tatccagcagactccctatcatagcttaaggaaatcatactacagaatgctttgcttacaccaatatagtgcaagcactgcacacgtgcct |
48124051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 48131912 - 48131963
Alignment:
| Q |
169 |
gagtaaaagcatacctttgacatgtgatattccaaaatctctcgccgtcctt |
220 |
Q |
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| T |
48131912 |
gagtaaaagcataccttggacatgtgagattccaaaatttgtcgccgtcctt |
48131963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 48141949 - 48141899
Alignment:
| Q |
170 |
agtaaaagcatacctttgacatgtgatattccaaaatctctcgccgtcctt |
220 |
Q |
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|||||||| ||||||||||||||||| ||||||| |||| ||||||||||| |
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| T |
48141949 |
agtaaaagaatacctttgacatgtgagattccaatatctgtcgccgtcctt |
48141899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 25254521 - 25254471
Alignment:
| Q |
170 |
agtaaaagcatacctttgacatgtgatattccaaaatctctcgccgtcctt |
220 |
Q |
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| T |
25254521 |
agtaaaagaatacctttgacatgtgagattccaatatctgtcgccgtcctt |
25254471 |
T |
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