View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9459_low_38 (Length: 241)
Name: NF9459_low_38
Description: NF9459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9459_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 42658692 - 42658774
Alignment:
| Q |
141 |
ataatgtaccaacaaaagaagcttataaactactcaaacatgcaagaaacaatccagcatgtacaccaaactcaagacacctt |
223 |
Q |
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| T |
42658692 |
ataatgtaccaacaaaagaagcttataaactactcaaacatgcaagaaacaatccagcatgtacaccaaactcaagacacctt |
42658774 |
T |
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Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 42658552 - 42658628
Alignment:
| Q |
1 |
tggttttcaaccacaattccttatcctctcatcaatgaatgaagcaggcaacaccatctttctcgacgataaccacg |
77 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42658552 |
tggttttcaaccacaattccttatcctctcatcaatgaatgaagcaggcaacaccatctttctcgacgataaccacg |
42658628 |
T |
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