View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9459_low_4 (Length: 424)
Name: NF9459_low_4
Description: NF9459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9459_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Complemental strand, 42925749 - 42925356
Alignment:
| Q |
19 |
gtgaggaggtagtgtcaatggcctaatccaacaaattaatgctcatgaaaatcgttaaacaagtccttctaaatattccaaagcacgtgacaacatnnnn |
118 |
Q |
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| T |
42925749 |
gtgaggaggttgtgtcaatggcctaatccaacaaattaatgctcatgaaaatcgttaaacaagtccttctaaatattccaaagcacgtgacaacataaaa |
42925650 |
T |
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| Q |
119 |
nnntaatgtactaataaagaaaggaagtagttaagggattcaaactcatcacccattggacaaagtttactcttaaattttgttcgtgaaattaaagcaa |
218 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42925649 |
aaataatgtactgataaagaaaggaagtagttaagggattcaaactcatcacccattggacaaagtttactcttaaattttgttcgtgaaattaaagcaa |
42925550 |
T |
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| Q |
219 |
aagtaatgcaatattcaaagatgtagatgtgaaaatgaatatataatattgaagtattgaagagtagaatgagtaattgtagaaatatagatgagagatt |
318 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42925549 |
aagtaatgcaatattcagagatgtagatgtgaaaatgaatatataatattgaagtattgaagagtagaatgagtaattgtagaaatatagatgagagatt |
42925450 |
T |
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| Q |
319 |
gttatcaaatgtgacttgtagctagaatagctttatcaagctgattctataagtcgttggatttagtgggtcttcctatcttttacgcgtccttt |
413 |
Q |
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|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42925449 |
gttatc-aatgtgacttgtagatagaatagctttatcaagctgattctataagtcgttggatttagtgggtcttcctatcttttacgcgtccttt |
42925356 |
T |
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