View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9459_low_40 (Length: 239)
Name: NF9459_low_40
Description: NF9459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9459_low_40 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 43948112 - 43948335
Alignment:
| Q |
1 |
atgtagctggtattctagcttacaaaaaggcagaatcttggcatcagcaaatgaaaataaaaacatgctctttttaggattgtttatataagaataggtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43948112 |
atgtagctggtattctagcttacaaaaaggcagaatcttggcatcagcaaatgaaaataaaaacatgctctttttaggattgtttatataagaataggtc |
43948211 |
T |
|
| Q |
101 |
tatgttagttgagcgaattagagttattagtttgtcaagtgttgattagttgacttgtagttgagacttgagaaggacgcaatgtgataattagagaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43948212 |
tatgttagttgagcgaattagagttattagtttgtcaagtgttgattagttgagacgtagttgagacttgagaaggacgcaatgtgataattagagaaaa |
43948311 |
T |
|
| Q |
201 |
aatacatgttacctataaataagt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
43948312 |
aatacatgttacctataaataagt |
43948335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University