View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9459_low_42 (Length: 229)
Name: NF9459_low_42
Description: NF9459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9459_low_42 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 28 - 229
Target Start/End: Complemental strand, 25189837 - 25189636
Alignment:
| Q |
28 |
catcaattttaacataatgtttttactttgtaacaacaatagagggaaagttgagtggaggcataaatcgtgaaggaatcaaatattacaacaacctcat |
127 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25189837 |
catcacttttaacataatgtttttactttgtaacaacaatagagggaaagttgagtggaggcataaatcgtgaaggaatcaaatattacaacaacctcat |
25189738 |
T |
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| Q |
128 |
caacgaactattggctaatggtaacattcataatcatttttccaaactatttgttagaatctgtactttatcatttaaattttaataattaagttgttgt |
227 |
Q |
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| T |
25189737 |
caacgaactattggctaatggtaacattcataatcatttttccaaactatttgttagaatctgtactttatcatttaaattttaataattaagttgttgt |
25189638 |
T |
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| Q |
228 |
ta |
229 |
Q |
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|| |
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| T |
25189637 |
ta |
25189636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 25189871 - 25189835
Alignment:
| Q |
6 |
agttggatggtatgtttcacaccatcaattttaacat |
42 |
Q |
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| T |
25189871 |
agttggatggtatgtttcacaccatcaattttaacat |
25189835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 25039233 - 25039181
Alignment:
| Q |
99 |
gaaggaatcaaatattacaacaacctcatcaacgaactattggctaatggtaa |
151 |
Q |
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| T |
25039233 |
gaaggaatcaaatattacaacaacctgatcaatgaactacttgataatggtaa |
25039181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 25047174 - 25047095
Alignment:
| Q |
72 |
ggaaagttgagtggaggcataaatcgtgaaggaatcaaatattacaacaacctcatcaacgaactattggctaatggtaa |
151 |
Q |
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| T |
25047174 |
ggaaagcttagtggaggtgtaaaccatggaggaataaactactacaacaacctcatcgatgaactattggctaatggtaa |
25047095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 25000382 - 25000468
Alignment:
| Q |
72 |
ggaaagttgagtggaggcataaatcgtgaaggaatcaaatattacaacaacctcatcaacgaactattggctaatggtaacattcat |
158 |
Q |
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| T |
25000382 |
ggaaagtttagtggaggtgtaaaccaggagggaataaactactacaacgacctcatcaacgaagtattggctaaaggtaaaattcat |
25000468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 24986709 - 24986672
Alignment:
| Q |
114 |
tacaacaacctcatcaacgaactattggctaatggtaa |
151 |
Q |
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| T |
24986709 |
tacaacaacctcatcgatgaactattggctaatggtaa |
24986672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 65 - 151
Target Start/End: Original strand, 9213210 - 9213296
Alignment:
| Q |
65 |
aatagagggaaagttgagtggaggcataaatcgtgaaggaatcaaatattacaacaacctcatcaacgaactattggctaatggtaa |
151 |
Q |
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| T |
9213210 |
aatagaaggaaagcttagtggtggcataaatcaagaaggaatcaactattacaacaatttcatcaatgagttattggctaatggtaa |
9213296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 42167741 - 42167691
Alignment:
| Q |
99 |
gaaggaatcaaatattacaacaacctcatcaacgaactattggctaatggt |
149 |
Q |
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| T |
42167741 |
gaaggaatcaaatattacaacaacctcatcaatgaattgttgactaatggt |
42167691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 42157246 - 42157196
Alignment:
| Q |
99 |
gaaggaatcaaatattacaacaacctcatcaacgaactattggctaatggt |
149 |
Q |
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|||||| ||||||||||||||||||||||||| ||| | ||||| |||||| |
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| T |
42157246 |
gaaggagtcaaatattacaacaacctcatcaatgaattgttggccaatggt |
42157196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 42290178 - 42290228
Alignment:
| Q |
99 |
gaaggaatcaaatattacaacaacctcatcaacgaactattggctaatggt |
149 |
Q |
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| T |
42290178 |
gaaggagtcaaatattacaacaacctcatcaatgagttgttggctaatggt |
42290228 |
T |
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