View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9459_low_47 (Length: 218)
Name: NF9459_low_47
Description: NF9459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9459_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 12666217 - 12666408
Alignment:
| Q |
15 |
acatcacaaacaacaatatcacataaatcttcataaccaccaccactaccaacaccaaccgcactgtagcttcgttacaccacgcacctccactccatac |
114 |
Q |
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| T |
12666217 |
acatcaccaacaacaatatcacataaatcttcatcaccaccaccactaccaacaccaaccgcactgtagcttcgttacaccacgcacctccactccatac |
12666316 |
T |
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| Q |
115 |
cctaaccctaaatccaattccaattcaaaatcaatttccttcatcttccttctcctcttctctctccgttctgtctagtcccttttcccttt |
206 |
Q |
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| T |
12666317 |
cctaaccctaaatccaattccaattcaaaatcaatttccttcatcttccttctcctcttctctctccgttctgtctagtcccttttcccttt |
12666408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 668096 - 667905
Alignment:
| Q |
15 |
acatcacaaacaacaatatcacataaatcttcataaccaccaccactaccaacaccaaccgcactgtagcttcgttacaccacgcacctccactccatac |
114 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
668096 |
acatcaccaacaacaatatcacataaatcttcatcaccaccaccactatcaacaccaaccgcactgtagcttcgttacaccacgcacctccactccatac |
667997 |
T |
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| Q |
115 |
cctaaccctaaatccaattccaattcaaaatcaatttccttcatcttccttctcctcttctctctccgttctgtctagtcccttttcccttt |
206 |
Q |
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| T |
667996 |
cctaaccctaattccaattccaattcaaaatcaatttccttcatcttccttctcctcttctctctccgttctgtctagtcccttttcccttt |
667905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 21914081 - 21914154
Alignment:
| Q |
133 |
tccaattcaaaatcaatttccttcatcttccttctcctcttctctctccgttctgtctagtcccttttcccttt |
206 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||||||| | || |||||||||||||| |
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| T |
21914081 |
tccaattcaaaatcaatttccttcatcttccttcttctattctctctccgttctctttactcccttttcccttt |
21914154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 21913891 - 21913970
Alignment:
| Q |
51 |
ccaccaccactaccaacaccaaccgcactgtagcttcgttacaccacgcacctccactccataccctaaccctaaatcca |
130 |
Q |
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|||||||||| ||||||||| || ||| || || |||| ||||||||||| |||||||| ||||||||||||| |||| |
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| T |
21913891 |
ccaccaccaccaccaacaccgcccccaccgtctctccgttccaccacgcaccaccactccaaaccctaaccctaactcca |
21913970 |
T |
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