View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9459_low_5 (Length: 408)

Name: NF9459_low_5
Description: NF9459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9459_low_5
NF9459_low_5
[»] chr3 (4 HSPs)
chr3 (1-392)||(22157794-22158186)
chr3 (259-390)||(9765843-9765971)
chr3 (174-243)||(9765713-9765782)
chr3 (308-390)||(6077884-6077964)
[»] chr7 (2 HSPs)
chr7 (1-392)||(9332853-9333246)
chr7 (222-260)||(27273126-27273164)
[»] chr4 (3 HSPs)
chr4 (7-387)||(51861836-51862214)
chr4 (260-387)||(39482371-39482498)
chr4 (210-260)||(7807639-7807689)
[»] scaffold0755 (1 HSPs)
scaffold0755 (319-390)||(5432-5503)
[»] chr5 (3 HSPs)
chr5 (319-390)||(27030049-27030120)
chr5 (259-390)||(21114748-21114876)
chr5 (164-260)||(21114920-21115016)
[»] chr8 (3 HSPs)
chr8 (319-390)||(22647935-22648006)
chr8 (164-260)||(43651711-43651807)
chr8 (259-378)||(43651549-43651667)
[»] scaffold0039 (2 HSPs)
scaffold0039 (180-258)||(81348-81426)
scaffold0039 (265-388)||(81476-81596)
[»] chr2 (2 HSPs)
chr2 (303-390)||(24863560-24863643)
chr2 (95-243)||(24863748-24863896)
[»] chr6 (2 HSPs)
chr6 (316-388)||(19380817-19380887)
chr6 (222-260)||(13550383-13550421)


Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 22158186 - 22157794
Alignment:
Q  1 agtcacaaggaaaattaaagtattatttgtttctatttctatgcatattatctctttctaattccctgcatatgattttttccaacatatggagaaaaca 100  Q
    ||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22158186 agtcataaggaaaattaaggtattatttgtttctatttctattcatattatctctttctaattccctgcatatgattttttccaacatatggagaaaaca 22158087  T
Q  101 tttgtttggtgtagccttctttttatttcaaatatacctctactatttcggnnnnnnncatatgtaatttctgataactcaaagtaactaatgtatggca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||       ||||||||||||||||||||||||||||||||||||||||||    
T  22158086 tttgtttggtgtagccttctttttatttcaaatatacctctactattttggtttttttcatatgtaatttctgataactcaaagtaactaatgtatggca 22157987  T
Q  201 gtttttctatctatatttgctaattgctaatgagaattgaggaatgagcggttctattg-tccagattacaattgaagagacatttcatctatatttaga 299  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22157986 gtttttctatctatattttctaattgctaatgagaattgaggaatgagcggttctattgttccagattacaattgaagagacatttcatctatatttaga 22157887  T
Q  300 tagggaaacatgacagggtttcaccaaatatcaatatttattatctcttttatcatccattgatttcagaacaaagagaaagatacatttctt 392  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22157886 tagggaaacatgacaggatttcaccaaatatcaatatttattatctcttttatcatccattgatttcagaacaaagagaaagatacatttctt 22157794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 259 - 390
Target Start/End: Original strand, 9765843 - 9765971
Alignment:
Q  259 gtccagattacaattg-aagagacatttcatctatatttagatagggaaacatgacagggtttcaccaaatatcaatatttattatctcttttatcatcc 357  Q
    ||||| |||||||||| ||||||||||||||| | |  |||| ||| |||||||||||| ||||||| || ||| |||||| ||||||||| ||| ||||    
T  9765843 gtccaaattacaattgcaagagacatttcatccaaagatagagagg-aaacatgacagg-tttcaccgaagatctatatttcttatctcttctatgatcc 9765940  T
Q  358 attgatttcagaacaaagagaaagatacatttc 390  Q
    | ||||||||||||||||||  |||||||||||    
T  9765941 aatgatttcagaacaaagag--agatacatttc 9765971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 243
Target Start/End: Original strand, 9765713 - 9765782
Alignment:
Q  174 ataactcaaagtaactaatgtatggcagtttttctatctatatttgctaattgctaatgagaattgagga 243  Q
    ||||||| |||||||| || |||| ||| || ||||||||||||||| |||||||| |||||||||||||    
T  9765713 ataactctaagtaactgatttatgacaggttctctatctatatttgccaattgctattgagaattgagga 9765782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 390
Target Start/End: Original strand, 6077884 - 6077964
Alignment:
Q  308 catgacagggtttcaccaaatatcaatatttattatctcttttatcatccattgatttcagaacaaagagaaagatacatttc 390  Q
    ||||||||||||||||||| | || |||||| || || ||||||||||||||| ||||   |||||||||||| |||||||||    
T  6077884 catgacagggtttcaccaagtttctatatttcttttcccttttatcatccatttattt--taacaaagagaaatatacatttc 6077964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 392
Target Start/End: Complemental strand, 9333246 - 9332853
Alignment:
Q  1 agtcacaaggaaaattaaagtattatttgtttctatttctatgcatattatctctttctaattccctgcatatgatttttt-ccaacatatggagaaaac 99  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||| |||||||||||||| |||    
T  9333246 agtcacaaggaaaattaaggtattatttgtttctatttctatgcatgttatctgtttctaattccctacatatgatttttttccaacatatggagacaac 9333147  T
Q  100 atttgtttggtgtagccttctttttatttcaaatatacctctactatttcggnnnnnnncatatgtaatttctgataactcaaagtaactaatgtatggc 199  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||| |        ||||||||||||||||||||||||||||||| || ||||||    
T  9333146 attggtttggtgtagccttctttttatttcaaatatacctctactattttgatttttttcatatgtaatttctgataactcaaagtaactgatctatggc 9333047  T
Q  200 agtttttctatctatatttgctaattgctaatgagaattgaggaatgagcggttctattgt-ccagattacaattgaagagacatttcatctatatttag 298  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  9333046 agttattctatctatatttgctaattgctaatgagaattgaggaatgagcggttctattgttccagattacaattgaagagacatttcatctatctttag 9332947  T
Q  299 atagggaaacatgacagggtttcaccaaatatcaatatttattatctcttttatcatccattgatttcagaacaaagagaaagatacatttctt 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9332946 atagggaaacatgacagggtttcaccaaatatcaatatttattatctcttttatcatccattgatttcagaacaaagagaaaaatacatttctt 9332853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 27273164 - 27273126
Alignment:
Q  222 aattgctaatgagaattgaggaatgagcggttctattgt 260  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  27273164 aattgctaatgagaattgaggattgagcggctctattgt 27273126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 7 - 387
Target Start/End: Original strand, 51861836 - 51862214
Alignment:
Q  7 aaggaaaattaaagtattatttgtttctatttctatgcatattatctctttctaattccctgcatatgattttttccaacatatggagaaaacatttgtt 106  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||   |||||||||||||||||||||||||| ||| || |||    
T  51861836 aaggaaaattaaggtattatttgtttctatttctatgcatattatctgtttctaattccc---atatgattttttccaacatatggagacaacgttggtt 51861932  T
Q  107 tggtgtagccttctttttatttcaaatatacctctactatttcggnnnnnnncatatgtaatttctgataactcaaagtaactaatgtatggcagttttt 206  Q
    |||||||||||||  ||||||||||||||||| ||||||||||||       ||||||||||||||||||||||||||||||| || |||||||||||||    
T  51861933 tggtgtagccttccatttatttcaaatatacccctactatttcggtttttttcatatgtaatttctgataactcaaagtaactgatctatggcagttttt 51862032  T
Q  207 ctatctatatttgctaattgctaatgagaattgaggaatgagcggttctattgt-ccagattacaattgaagagacatttcatctatatttagataggga 305  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||    
T  51862033 ctatctatatttgctaaatgctaatgagaattgaggaatgagcgattctattgttccatattacaattgaagagacatttcatctatatttagctaggga 51862132  T
Q  306 aacatgacagggtttcaccaaatatcaatatttattatctcttttatcatccattgatttcagaacaaagagaaagatacat 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51862133 aacatgacagggtttcaccaaatatcaatatttattatctcttttatcatccattgatttcagaacaaagagaaagatacat 51862214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 260 - 387
Target Start/End: Complemental strand, 39482498 - 39482371
Alignment:
Q  260 tccagattacaattgaagagacatttcatctatatttagatagggaaacatgacagggtttcaccaaatatcaatatttattatctcttttatcatccat 359  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39482498 tccaaattacaattgaagagacatttcatctatatttagatagggaaacatgacagggttttaccaaatatcaatatttattatctcttttatcatccat 39482399  T
Q  360 tgatttcagaacaaagagaaagatacat 387  Q
    || |||||||||||||||||||||||||    
T  39482398 tggtttcagaacaaagagaaagatacat 39482371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 7807689 - 7807639
Alignment:
Q  210 tctatatttgctaattgctaatgagaattgaggaatgagcggttctattgt 260  Q
    |||||||||||  ||||||||| ||||||||||| |||||||| |||||||    
T  7807689 tctatatttgccgattgctaataagaattgaggattgagcggtactattgt 7807639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0755 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0755
Description:

Target: scaffold0755; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 319 - 390
Target Start/End: Original strand, 5432 - 5503
Alignment:
Q  319 ttcaccaaatatcaatatttattatctcttttatcatccattgatttcagaacaaagagaaagatacatttc 390  Q
    ||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5432 ttcaccaaacatctatatttcttatctcttttatcatccattgatttcagaacatagagaaagatacatttc 5503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 319 - 390
Target Start/End: Original strand, 27030049 - 27030120
Alignment:
Q  319 ttcaccaaatatcaatatttattatctcttttatcatccattgatttcagaacaaagagaaagatacatttc 390  Q
    ||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27030049 ttcaccaaacatctatatttcttatctcttttatcatccattgatttcagaacatagagaaagatacatttc 27030120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 390
Target Start/End: Complemental strand, 21114876 - 21114748
Alignment:
Q  259 gtccagattacaattg-aagagacatttcatctatatttagatagggaaacatgacagggtttcaccaaatatcaatatttattatctcttttatcatcc 357  Q
    ||||| |||||||||| ||||||||||||||| | |  |||| ||| |||||||||||| ||||||| || ||| |||||| ||||||||||||| ||||    
T  21114876 gtccaaattacaattgcaagagacatttcatccaaagatagagagg-aaacatgacagg-tttcaccgaagatctatatttcttatctcttttatgatcc 21114779  T
Q  358 attgatttcagaacaaagagaaagatacatttc 390  Q
    | ||||||||||||||||||  |||||||||||    
T  21114778 aatgatttcagaacaaagag--agatacatttc 21114748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 21115016 - 21114920
Alignment:
Q  164 gtaatttctgataactcaaagtaactaatgtatggcagtttttctatctatatttgctaattgctaatgagaattgaggaatgagcggttctattgt 260  Q
    |||| |||| ||||||| |||||||| || ||||  || || ||||||||||||||| |||||||||||||||||||||| ||| | ||||||||||    
T  21115016 gtaacttctaataactctaagtaactgatttatgataggttctctatctatatttgccaattgctaatgagaattgaggattgaacagttctattgt 21114920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 390
Target Start/End: Complemental strand, 22648006 - 22647935
Alignment:
Q  319 ttcaccaaatatcaatatttattatctcttttatcatccattgatttcagaacaaagagaaagatacatttc 390  Q
    ||||||||| ||| |||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  22648006 ttcaccaaacatctatatttcttatctcttttatcatccattgatttcagaacatagataaagatacatttc 22647935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 164 - 260
Target Start/End: Complemental strand, 43651807 - 43651711
Alignment:
Q  164 gtaatttctgataactcaaagtaactaatgtatggcagtttttctatctatatttgctaattgctaatgagaattgaggaatgagcggttctattgt 260  Q
    |||| |||| ||||||| |||||||| || |||| ||| || ||||||||||||||| |||||||||||||||||||||| ||| | ||||||||||    
T  43651807 gtaacttctaataactctaagtaactgatttatgacaggttctctatctatatttgccaattgctaatgagaattgaggattgaacagttctattgt 43651711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 378
Target Start/End: Complemental strand, 43651667 - 43651549
Alignment:
Q  259 gtccagattacaattg-aagagacatttcatctatatttagatagggaaacatgacagggtttcaccaaatatcaatatttattatctcttttatcatcc 357  Q
    ||||| |||||||||| ||||||||||||||| | |  |||| ||| |||||||||||| ||||||| || ||| |||||| ||||||||||||| ||||    
T  43651667 gtccaaattacaattgcaagagacatttcatccaaagatagagagg-aaacatgacagg-tttcaccgaagatctatatttcttatctcttttatgatcc 43651570  T
Q  358 attgatttcagaacaaagaga 378  Q
    | |||||||| ||||||||||    
T  43651569 aatgatttcataacaaagaga 43651549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 81348 - 81426
Alignment:
Q  180 caaagtaactaatgtatggcagtttttctatctatatttgctaattgctaatgagaattgaggaatgagcggttctatt 258  Q
    ||||||||| ||| | ||||||||||||||| |||||||||  |||||| |||||||||||||| |||| |||||||||    
T  81348 caaagtaacaaatttgtggcagtttttctatttatatttgccgattgctgatgagaattgaggattgagaggttctatt 81426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 388
Target Start/End: Original strand, 81476 - 81596
Alignment:
Q  265 attacaattgaagagacatttcatctatatttagatagggaaacatgacagggtttcaccaaatatcaatatttattatctcttttatcatccattgatt 364  Q
    |||||||||||||||||||||||  || |  |||| |||  | |||| |||| |||||||||| |||  ||||| ||||||||||||| ||||| |||||    
T  81476 attacaattgaagagacatttcacataaagatagagaggatagcatgtcagg-tttcaccaaagatc--tatttcttatctcttttatgatccactgatt 81572  T
Q  365 tcagaacaaagagaaagatacatt 388  Q
    |||||| ||||| |||||||||||    
T  81573 tcagaataaagaaaaagatacatt 81596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 390
Target Start/End: Complemental strand, 24863643 - 24863560
Alignment:
Q  303 ggaaacatgacagggtttcaccaaatatcaatatttattatctcttttatcatccattgatttcagaacaaagagaaagatacatttc 390  Q
    |||||||||||||| |||||||||| ||| |||||| ||||||||||||| |||||||||||| ||   ||||||||| |||||||||    
T  24863643 ggaaacatgacagg-tttcaccaaagatctatatttcttatctcttttatgatccattgattttag---aaagagaaaaatacatttc 24863560  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 243
Target Start/End: Complemental strand, 24863896 - 24863748
Alignment:
Q  95 aaaacatttgtttggtgtagccttctttttatttcaaatatacctctactatttcggnnnnnnncatatgtaatttctgataactcaaagtaacta--at 192  Q
    ||||||||||||||||  |||||  |||| |||||||||||||| |||||||||| |       ||| | ||| |||| ||||||||||||||||   ||    
T  24863896 aaaacatttgtttggt--agcctatttttcatttcaaatatacccctactatttcaggttatttcatctataacttctaataactcaaagtaactttgat 24863799  T
Q  193 gtatggcagtttttctatctatatttgctaattgctaatgagaattgagga 243  Q
     |||| |||||| ||||||||||| ||  |||||||||||| |||||||||    
T  24863798 ttatgacagtttctctatctatatctgtcaattgctaatgacaattgagga 24863748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 388
Target Start/End: Original strand, 19380817 - 19380887
Alignment:
Q  316 ggtttcaccaaatatcaatatttattatctcttttatcatccattgatttcagaacaaagagaaagatacatt 388  Q
    |||||||||||| |||  ||||| ||||||||||||| ||||| ||||||||||| ||||| |||||||||||    
T  19380817 ggtttcaccaaagatc--tatttcttatctcttttatgatccactgatttcagaataaagaaaaagatacatt 19380887  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 13550421 - 13550383
Alignment:
Q  222 aattgctaatgagaattgaggaatgagcggttctattgt 260  Q
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T  13550421 aattgctaatgagaattgaggattgaggggttctattgt 13550383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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