View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9460_high_19 (Length: 220)

Name: NF9460_high_19
Description: NF9460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9460_high_19
NF9460_high_19
[»] chr1 (1 HSPs)
chr1 (17-220)||(18192070-18192273)
[»] chr7 (14 HSPs)
chr7 (82-218)||(21788339-21788475)
chr7 (17-135)||(21714376-21714500)
chr7 (82-218)||(21681760-21681896)
chr7 (82-214)||(21785520-21785652)
chr7 (85-135)||(21726089-21726139)
chr7 (82-135)||(21704836-21704889)
chr7 (82-135)||(21772154-21772207)
chr7 (82-135)||(21808067-21808120)
chr7 (84-135)||(21628318-21628369)
chr7 (82-129)||(21745731-21745778)
chr7 (82-135)||(21646936-21646989)
chr7 (17-70)||(21807996-21808049)
chr7 (169-218)||(21992292-21992341)
chr7 (17-69)||(21689678-21689730)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 18192070 - 18192273
Alignment:
Q  17 ccatccacaaacaacatccatgatagcttttcttccaagttatcaaagccttcacaagatacactagttaaaacatcgtcggcaaaaagacccttcagtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18192070 ccatccacaaacaacatccatgatagcttttcttccaagttatcaaagccttcacaagatacactagttaaaacatcgtcggcaaaaagacccttcagtt 18192169  T
Q  117 cattaatgttatctgcaatatcttggcatagatcctttggattgcacctaaaattttcgaggaattttgctgcccactgtagcttgtacttctctcctaa 216  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  18192170 cattaatgttatctgcaatatcttggtatagatcctttggattgcacctaaaattttcgaggaattttgctgcccactgtagcttgtacttctctcataa 18192269  T
Q  217 ctcc 220  Q
    ||||    
T  18192270 ctcc 18192273  T

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Target: chr7 (Bit Score: 45; Significance: 8e-17; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 82 - 218
Target Start/End: Complemental strand, 21788475 - 21788339
Alignment:
Q  82 agttaaaacatcgtcggcaaaaagacccttcagttcattaatgttatctgcaatatcttggcatagatcctttggattgcacctaaaattttcgaggaat 181  Q
    |||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| | || |   ||||||| |||| ||   | |   ||||||| | ||    
T  21788475 agttaaaacatcgtcgccaaaatgacccttcagttcatcaatgttatctgcaatctttttgtgcagatcctctggaatgtgtccagtgttttcgatgtat 21788376  T
Q  182 tttgctgcccactgtagcttgtacttctctcctaact 218  Q
    ||||||||||||   ||||||||||||||||||||||    
T  21788375 tttgctgcccacataagcttgtacttctctcctaact 21788339  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 21714500 - 21714376
Alignment:
Q  17 ccatccacaaacaacatccatgatagcttttcttccaagttatcaaagccttcacaagatacactagtt------aaaacatcgtcggcaaaaagaccct 110  Q
    |||||||| ||||||||||| |||||||||||||| | | || |||||||||||  |||   ||| |||      |||||||||| | ||||| ||||||    
T  21714500 ccatccacgaacaacatccacgatagcttttcttcaaggctaccaaagccttcaagagaccaactggttgaagctaaaacatcgttgtcaaaatgaccct 21714401  T
Q  111 tcagttcattaatgttatctgcaat 135  Q
    ||||||||| |||||||||||||||    
T  21714400 tcagttcatcaatgttatctgcaat 21714376  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 218
Target Start/End: Complemental strand, 21681896 - 21681760
Alignment:
Q  82 agttaaaacatcgtcggcaaaaagacccttcagttcattaatgttatctgcaatatcttggcatagatcctttggattgcacctaaaattttcgaggaat 181  Q
    ||||||||||||||||  |||| | ||||||| ||||| ||||||||| ||||| | || | ||||||||||| || |||  | |   |||| || | ||    
T  21681896 agttaaaacatcgtcgctaaaatggcccttcaattcatcaatgttatcagcaatttttttgtatagatccttttgaatgcttccagtgtttttgatgtat 21681797  T
Q  182 tttgctgcccactgtagcttgtacttctctcctaact 218  Q
    ||||||||||||   ||||||||||||||||||||||    
T  21681796 tttgctgcccacataagcttgtacttctctcctaact 21681760  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 214
Target Start/End: Complemental strand, 21785652 - 21785520
Alignment:
Q  82 agttaaaacatcgtcggcaaaaagacccttcagttcattaatgttatctgcaatatcttggcatagatcctttggattgcacctaaaattttcgaggaat 181  Q
    |||||||||||| |||  |||| ||||||||||||||||||||||||| ||||| | || |  ||||||   ||||||||  |  | ||| |||||| ||    
T  21785652 agttaaaacatcatcgctaaaatgacccttcagttcattaatgttatcggcaatctttttgtgtagatcgcgtggattgcggcctatattctcgaggtat 21785553  T
Q  182 tttgctgcccactgtagcttgtacttctctcct 214  Q
    ||||| ||||||   ||||||||||||||||||    
T  21785552 tttgcggcccacataagcttgtacttctctcct 21785520  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 135
Target Start/End: Complemental strand, 21726139 - 21726089
Alignment:
Q  85 taaaacatcgtcggcaaaaagacccttcagttcattaatgttatctgcaat 135  Q
    ||||||||||||| ||||| ||||||||||||||| ||||||||| |||||    
T  21726139 taaaacatcgtcgtcaaaatgacccttcagttcatcaatgttatcagcaat 21726089  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 21704889 - 21704836
Alignment:
Q  82 agttaaaacatcgtcggcaaaaagacccttcagttcattaatgttatctgcaat 135  Q
    |||||||||||| |||  |||| ||||||||||||||| |||||||||||||||    
T  21704889 agttaaaacatcatcgctaaaacgacccttcagttcatcaatgttatctgcaat 21704836  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 21772207 - 21772154
Alignment:
Q  82 agttaaaacatcgtcggcaaaaagacccttcagttcattaatgttatctgcaat 135  Q
    |||||||||||| ||| ||||| ||||||||||||||| ||||||||| |||||    
T  21772207 agttaaaacatcatcgtcaaaatgacccttcagttcatcaatgttatcagcaat 21772154  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 135
Target Start/End: Original strand, 21808067 - 21808120
Alignment:
Q  82 agttaaaacatcgtcggcaaaaagacccttcagttcattaatgttatctgcaat 135  Q
    |||||||||||||||| ||||| |||||||||||||||  |||||||| |||||    
T  21808067 agttaaaacatcgtcgccaaaatgacccttcagttcatcgatgttatcagcaat 21808120  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 21628369 - 21628318
Alignment:
Q  84 ttaaaacatcgtcggcaaaaagacccttcagttcattaatgttatctgcaat 135  Q
    ||||||||||||||  |||| ||||||||||||||| ||||||||| |||||    
T  21628369 ttaaaacatcgtcgctaaaacgacccttcagttcatcaatgttatcagcaat 21628318  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 21745778 - 21745731
Alignment:
Q  82 agttaaaacatcgtcggcaaaaagacccttcagttcattaatgttatc 129  Q
    ||||||||||||||||  |||| ||||||||||||||| |||||||||    
T  21745778 agttaaaacatcgtcgctaaaacgacccttcagttcatcaatgttatc 21745731  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 21646989 - 21646936
Alignment:
Q  82 agttaaaacatcgtcggcaaaaagacccttcagttcattaatgttatctgcaat 135  Q
    ||||||||| ||||||  |||| ||||||||||||||| |||||||||| ||||    
T  21646989 agttaaaacgtcgtcgctaaaatgacccttcagttcatcaatgttatctacaat 21646936  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 21807996 - 21808049
Alignment:
Q  17 ccatccacaaacaacatccatgatagcttttcttccaagttatcaaagccttca 70  Q
    |||||||| |||||||||||||| ||||||||||| | | || |||||||||||    
T  21807996 ccatccacgaacaacatccatgacagcttttcttcaaggctaccaaagccttca 21808049  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 21992341 - 21992292
Alignment:
Q  169 attttcgaggaattttgctgcccactgtagcttgtacttctctcctaact 218  Q
    |||||||| | ||||||||||||||   ||||||||||||||||||||||    
T  21992341 attttcgatgtattttgctgcccacgtaagcttgtacttctctcctaact 21992292  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 21689730 - 21689678
Alignment:
Q  17 ccatccacaaacaacatccatgatagcttttcttccaagttatcaaagccttc 69  Q
    |||||||| ||||||||||| |||||||||||||| |   |||||||||||||    
T  21689730 ccatccaccaacaacatccacgatagcttttcttcaagactatcaaagccttc 21689678  T

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