View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9460_high_2 (Length: 658)
Name: NF9460_high_2
Description: NF9460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9460_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 14 - 596
Target Start/End: Original strand, 45330202 - 45330791
Alignment:
| Q |
14 |
agacccaaggtaaattcttctttttgattcttaatatgctaagatgagtgttagtattgtgcatttaataaagaattacagctgaatctatattaagagt |
113 |
Q |
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| T |
45330202 |
agacccaaggtaaattcttctttttgattcttaatatgctaagatgagtgtcagtattgtgcatttaataaagaattacaactgaatctatgttaagagt |
45330301 |
T |
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| Q |
114 |
tatctatttttcgtgattaatttcaactagtattacaactggatctatattaagagttatctatatcaagacagacgacatgtagagtatggtatgttta |
213 |
Q |
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| T |
45330302 |
tatctatttttcatgattaatttcaactagtattacaactggatctatattaagagttacctatatcaagacagacgacgtgtagagtatggtatgttca |
45330401 |
T |
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| Q |
214 |
tgtatgtgttggaagatagctttg-------ttgattttatggttgttggtggggatttaaggacgtagcaaaaaccctggacactactcgtgctaaata |
306 |
Q |
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| T |
45330402 |
tgtatgtgttggaagatagctttgttgtttgttgattttatggttgttggtggggatttaaggacgtagcaaaaaccctggacattgctcgtgctaaata |
45330501 |
T |
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| Q |
307 |
ttatattgtcaccctcaccattttcaacttttaggcactatacgaccaactatacaatttaggcactttaggaccaactatacgactaaatatttgtcgg |
406 |
Q |
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| T |
45330502 |
ttatactgtcaacctcaccgttttcaaattttaggcactatacgaccaactatacaatttaggcactttaggaccaactatacgactaaatatttgtcgg |
45330601 |
T |
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| Q |
407 |
ttgactagctaatttagtagcagtatatgaaaaataataacaaggatggtga-ttgccaaagtaagaaattttgtggaaaaaagagttacagttgcatgt |
505 |
Q |
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| T |
45330602 |
ttgattagctaatttagtagcagtatatgaaaaataataacaa-gatgatgatttgacaaagtaagaaattttgtggaaaaaagagttacagttgcatgt |
45330700 |
T |
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| Q |
506 |
aatgctgtggagatagagcttttgtgtgtaattttgatatgcaacatataaatattgttcatcttttcctcttaatgttatttaacagcta |
596 |
Q |
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| T |
45330701 |
aatgttacggagatagagcttttgtgtgtaattttgatatgcaacgtagaaatattgttcatcttttcctcttgatgttatttaacagcta |
45330791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 612 - 642
Target Start/End: Original strand, 45330794 - 45330824
Alignment:
| Q |
612 |
atggcaccgacactagtgggtgacgatcctg |
642 |
Q |
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| T |
45330794 |
atggcaccgacactagtgggtgacgatcctg |
45330824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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