View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9460_high_4 (Length: 577)
Name: NF9460_high_4
Description: NF9460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9460_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 12 - 440
Target Start/End: Original strand, 31523748 - 31524172
Alignment:
| Q |
12 |
gaacctgtgaatgacattgagcaggaaattaaggttgtgatcaagtggctcatggcacatacaagtattgaagaccaaaattttacaccactgacactac |
111 |
Q |
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||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31523748 |
gaacctgtgaatgacattgagcaggaaataaaggttgcgatcaagtggctcatggcacatacaagtattgaagaccaaaattttacaccactgacactac |
31523847 |
T |
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| Q |
112 |
aatatttaacaccataattttatcaacagaggcataagtcataaccatgtgttacatatataggttcataatctaaacaaatgaccatatccttatcaga |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31523848 |
aatatttaacaccataattttatcaacagaggcataagtcataaccatgtgtttcata----ggttcataatctaaacaaatgaccatatccttatcaga |
31523943 |
T |
|
| Q |
212 |
acatccactaaattttgtacataataagactgtataatggaaactgtctcccctagttcacaacaaaccataataaccagttacttcaacactctcctcc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
31523944 |
acatccactaaattttgtacataataagactgtataatggaaactgtctcccctagttcacaacaaaccataataaccaatcacttcaacactctcctcc |
31524043 |
T |
|
| Q |
312 |
atttcatacaacaattgttctctatgcataataaaataattaagcagctactaaaaatcaatttcataaccaacaataaattaataaggacacaatgact |
411 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31524044 |
atttcacacaacaattgttctctatgcataataaaatagttaagcagctactacaaatcactttcataaccaacaataaattaataaggacacaatgact |
31524143 |
T |
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| Q |
412 |
taaacttgaatgcttttggtttgattgta |
440 |
Q |
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| T |
31524144 |
taaacttgaatgcttttggtttgattgta |
31524172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 451 - 563
Target Start/End: Original strand, 31524301 - 31524413
Alignment:
| Q |
451 |
attccaataaatcacattaaacagtacatgttcaatagcgaaagattaaaatatcaatatacaacaatgtgacatgaaaatataaaaatatgtaaatgaa |
550 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31524301 |
attccgataaatcacattaaacggtacatgttcaatagcgaaagattaaaatatcaatatacaacaatgtgacatgaaaatataaaaatatgtaaacgaa |
31524400 |
T |
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| Q |
551 |
accctattttttg |
563 |
Q |
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||||||||||||| |
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| T |
31524401 |
accctattttttg |
31524413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 45652409 - 45652491
Alignment:
| Q |
70 |
atacaagtattgaagaccaaaattttacaccact----gacactacaatatttaacaccataattttatcaacagaggcataa |
148 |
Q |
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| T |
45652409 |
atacaagtattgaagaccacaattttacactactaccggccacaacaatatttaacaccataattttaccatcagaggcataa |
45652491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 212
Target Start/End: Original strand, 45652521 - 45652550
Alignment:
| Q |
183 |
tctaaacaaatgaccatatccttatcagaa |
212 |
Q |
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| T |
45652521 |
tctaaacaaatgaccatatccttatcagaa |
45652550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 496 - 556
Target Start/End: Complemental strand, 2353659 - 2353599
Alignment:
| Q |
496 |
ttaaaatatcaatatacaacaatgtgacatgaaaatataaaaatatgtaaatgaaacccta |
556 |
Q |
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|||||||| |||||||||| || ||||||||||| || |||||||||| || |||||||| |
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| T |
2353659 |
ttaaaataacaatatacaaaaacatgacatgaaaacatcaaaatatgtatataaaacccta |
2353599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 367
Target Start/End: Original strand, 31497555 - 31497647
Alignment:
| Q |
275 |
caaaccataataaccagttacttcaacactctcctccatttcatacaacaattgttctctatgcataataaaataattaagcagctactaaaa |
367 |
Q |
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| T |
31497555 |
caaaccataacacccaattacttcaacatcctccaccatttcacacaaaaattattctctatccataataaaatagataagcagctactaaaa |
31497647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 275 - 388
Target Start/End: Original strand, 31497740 - 31497853
Alignment:
| Q |
275 |
caaaccataataaccagttacttcaacactctcctccatttcatacaacaattgttctctatgcataataaaataattaagcagctactaaaaatcaatt |
374 |
Q |
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|||||||||| | ||| ||||||||||| ||| | |||||||| | || |||||||||| || |||||||||||| ||| |||||||||| |||||| || |
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| T |
31497740 |
caaaccataacacccaattacttcaacagtctaccccatttcacaaaaaaattgttctccatacataataaaatagttatgcagctactacaaatcactt |
31497839 |
T |
|
| Q |
375 |
tcataaccaacaat |
388 |
Q |
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|| | |||||||| |
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| T |
31497840 |
ccacatccaacaat |
31497853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 12 - 81
Target Start/End: Original strand, 41022759 - 41022829
Alignment:
| Q |
12 |
gaacctgtgaatgacattgagcaggaaattaa-ggttgtgatcaagtggctcatggcacatacaagtattg |
81 |
Q |
| |
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|||||||||||||| |||||| |||||| || ||||| |||||||||||||||||||||||||||||||| |
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| T |
41022759 |
gaacctgtgaatgatattgagtaggaaaccaaaggttgggatcaagtggctcatggcacatacaagtattg |
41022829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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