View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9460_high_5 (Length: 534)
Name: NF9460_high_5
Description: NF9460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9460_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 395
Target Start/End: Original strand, 43316751 - 43317134
Alignment:
| Q |
18 |
agctgcatcaagtgtttctggacatggcagttttggtccaatcccaaggtgaagagttgaatgacattgagagccaaatgatgcgagcaaattcgtatgt |
117 |
Q |
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| T |
43316751 |
agctgcatcaagtgtttctggacatggcagttttggtccaatcccaaggtgaagagttgaatgacattgagagccaaatgatgcgagcaaattcgtatgt |
43316850 |
T |
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| Q |
118 |
tagaggaggagtacaacaattacatgttgctaggaaaaatcaaaagaatacccgtaaatggacatgttttgccattttactactcctgatcctaattatt |
217 |
Q |
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| T |
43316851 |
tagaggaggagtacaacaattacatgttgctaggaaaaatcaaaagaatacccgtgaatggacatgttttgccattttactac------tcctaattatt |
43316944 |
T |
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| Q |
218 |
gctttggttatgatcctccctattgttttaaaaaataattagttgagattaattatttaattctcaaacggtggctactggctactgtgaaggttgattg |
317 |
Q |
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| T |
43316945 |
gctttggttataatcctccctattgttttaaaaaataattagttgagattaattaattaattctcaaatggtggctactggctactgtgaaggttgattg |
43317044 |
T |
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| Q |
318 |
attatg------------aatcaaaacttggtagtcaagtcaagcatcacttgtactagcatgagaaaatgcatctttatacagtagtac |
395 |
Q |
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| T |
43317045 |
attatgaataaaaatattaatcaaaacttggtagtcaagtcaagcatcacttgtactagcatgagaaaatgcatctttatacagtagtac |
43317134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 460 - 519
Target Start/End: Original strand, 43317194 - 43317253
Alignment:
| Q |
460 |
aagacttatccacaaaagaaaatttgttcaaatattttagattcttcgtttctagaatta |
519 |
Q |
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| T |
43317194 |
aagacttatcaacaaaagaaaatttgttcaaagattttagattcttcgtttctagaatta |
43317253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 192
Target Start/End: Complemental strand, 24710226 - 24710060
Alignment:
| Q |
26 |
caagtgtttctggacatggcagttttggtccaatcccaaggtgaagagttgaatgacattgagagccaaatgatgcgagcaaattcgtatgttagaggag |
125 |
Q |
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| T |
24710226 |
caagtgtttatggacatgtctgttttggttcaatcacaaggtgaacaattggataatattgaaagccacgtggcacgtgctaattcgtatgttagaggtg |
24710127 |
T |
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| Q |
126 |
gagtacaacaattacatgttgctaggaaaaatcaaaagaatacccgtaaatggacatgttttgccat |
192 |
Q |
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| T |
24710126 |
gggtccaacaattgcatgttgctaggaagcaccaaatgaataccagaaaatggacttgtattgccat |
24710060 |
T |
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