View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9460_low_13 (Length: 427)
Name: NF9460_low_13
Description: NF9460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9460_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 11 - 414
Target Start/End: Complemental strand, 4316204 - 4315797
Alignment:
| Q |
11 |
gattatactgttgatcaatgattttctttttgttaacccttcggttttcaggggaatgaagaggtccaggtaatccggagttcgatcgtgagataaatac |
110 |
Q |
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| T |
4316204 |
gattttactgttgatcaatgattttctttttgttaacccttcggttttcaggggaatgaagaggtcctggtaatccggagttcgatcgtgaagtaaatac |
4316105 |
T |
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| Q |
111 |
gattcttatttgatgaagctcattaaccacttgaatttaattgttttctatcgatgaaattttatcttgggcttaagcgttatttttgtatcttataaaa |
210 |
Q |
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| T |
4316104 |
gattcttatttgatgaagctcattaaccacttgaatttaattattttttatcaatgaaattttatcttcggcttaagcgttatttttgtatcttataaaa |
4316005 |
T |
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| Q |
211 |
cacattaggcattttgaatgttgcagctaactagagatttatactattttaatattgg----nnnnnnnnnnnnngacaagatattttaa----ttggtt |
302 |
Q |
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| T |
4316004 |
cacattaggcattttgaatattgcagctaactagag----atactattttaatattggttttttttttctttttcgacaagatattttaattggttggtt |
4315909 |
T |
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| Q |
303 |
attgactgctattcctattccaacagagttaaaaattagggcttcttcatacggagcagaatatacgtttttgaaacaatcaagatatcaatattcaatg |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4315908 |
attgactgctattcctattccaacagagttaaaaattagggcatcttcatactgagcagaatatacgtttttgaaacaatcaagatatcaatattcaatg |
4315809 |
T |
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| Q |
403 |
cataaaatactg |
414 |
Q |
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| T |
4315808 |
cataaaatactg |
4315797 |
T |
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