View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9460_low_16 (Length: 405)

Name: NF9460_low_16
Description: NF9460
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9460_low_16
NF9460_low_16
[»] chr8 (2 HSPs)
chr8 (1-340)||(32472333-32472670)
chr8 (60-138)||(20086230-20086308)
[»] chr5 (3 HSPs)
chr5 (125-355)||(36758495-36758722)
chr5 (60-152)||(36758402-36758494)
chr5 (59-138)||(3777696-3777775)
[»] scaffold0146 (3 HSPs)
scaffold0146 (241-355)||(24605-24719)
scaffold0146 (96-152)||(32315-32371)
scaffold0146 (101-152)||(29973-30024)
[»] chr4 (3 HSPs)
chr4 (241-355)||(43035940-43036054)
chr4 (59-192)||(43036423-43036553)
chr4 (96-144)||(53897655-53897703)
[»] chr1 (6 HSPs)
chr1 (241-349)||(21761842-21761950)
chr1 (261-355)||(37770647-37770741)
chr1 (66-143)||(18981488-18981565)
chr1 (60-107)||(9953148-9953195)
chr1 (103-154)||(37770236-37770287)
chr1 (66-138)||(42486372-42486445)
[»] chr7 (5 HSPs)
chr7 (61-180)||(27866812-27866928)
chr7 (67-144)||(28985278-28985355)
chr7 (96-149)||(47317776-47317829)
chr7 (59-99)||(47317205-47317245)
chr7 (66-137)||(21166378-21166448)
[»] chr3 (3 HSPs)
chr3 (61-148)||(44006395-44006482)
chr3 (64-138)||(37460532-37460606)
chr3 (60-144)||(8262721-8262805)
[»] chr2 (1 HSPs)
chr2 (61-144)||(34456935-34457018)
[»] scaffold0915 (1 HSPs)
scaffold0915 (67-144)||(784-861)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 32472333 - 32472670
Alignment:
Q  1 atatgaaatatgtatctacatttttatttattttaggaataggtattcacaaatatttaagaaagttgcttttctgacatcaaaagtttcctaaagacat 100  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||     
T  32472333 atatgaaatatgcatctacatttttatttattttaagaataggtattcataaataattaagaaagttacttttctgacatcaaaagtttcctaaagaca- 32472431  T
Q  101 aagtaaaatactaaattgccccccgcggtagttaactatcgttgaggacccgatgacggcagttaactaccgctaaattcatttcttcaatttatgtctc 200  Q
     |||||||||||||| |||| ||||||||||||||||| |||||||||||| | |||||||||||| ||||||| |||||||||||||||||||||||||    
T  32472432 -agtaaaatactaaaatgcctcccgcggtagttaactaccgttgaggacccaacgacggcagttaattaccgctgaattcatttcttcaatttatgtctc 32472530  T
Q  201 tacgtttgccattgccattccactttctccgtcnnnnnnncttcttctccatctttgttgcttttcttcaattcacactacctattgttggcatcaatta 300  Q
    ||||||||||||||||||||||||| ||| |||       ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32472531 tacgtttgccattgccattccacttgctctgtctttttttcttcttctccatctttgttgcttttcttcaattcacactacctattgctggcatcaatta 32472630  T
Q  301 tacatcatattttcactacaatactcttgtttcatcaatt 340  Q
    ||||||||||| |||||||||||||||||||||| |||||    
T  32472631 tacatcatattgtcactacaatactcttgtttcaccaatt 32472670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 20086308 - 20086230
Alignment:
Q  60 agaaagttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaacta 138  Q
    ||||||| | |||| |||||||||||||||||| | |||| || ||||||||| || |||| || ||||||||||||||    
T  20086308 agaaagtagtttttttgacatcaaaagtttcctgacgacacaaataaaatacttaaatgcctccagcggtagttaacta 20086230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 125 - 355
Target Start/End: Original strand, 36758495 - 36758722
Alignment:
Q  125 gcggtagttaactatcgttgaggacccgatgacggcagttaactaccgctaaattcatttcttcaatttatgtctctacgtttgccattgccattccact 224  Q
    |||||||||||||| ||||||||||||     ||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  36758495 gcggtagttaactaccgttgaggacccag---cggtagttaactaccgctgaattcatttcttcaatttatgtctctacgtttgccagtgccattccact 36758591  T
Q  225 ttctccgtcnnnnnnncttcttctccatctttgttgcttttcttcaattcacactacctattgttggcatcaattatacatcatattttcactacaatac 324  Q
    ||||| |||       |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  36758592 ttctctgtcttcttttcttcttcttcatctttgttgcttttcttcaattcacactacctactattggcatcaattatacatcatattttcactacaatac 36758691  T
Q  325 tcttgtttcatcaattatacagcttcaccaa 355  Q
    |||||||||| ||||||||||||||||||||    
T  36758692 tcttgtttcaccaattatacagcttcaccaa 36758722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 60 - 152
Target Start/End: Original strand, 36758402 - 36758494
Alignment:
Q  60 agaaagttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaactatcgttgaggacccg 152  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||| |||| || |||| ||||||||||||||  ||||||||||||    
T  36758402 agaaagttgcttttctgacatcaaaagtttcctaaagacaagagtaaaatattaaaatgtccccagcggtagttaactactgttgaggacccg 36758494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 3777696 - 3777775
Alignment:
Q  59 aagaaagttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaacta 138  Q
    ||||||||||  ||||||||||||||||||| |||||||||||||||||||| |||| ||||| |  |||||||||||||    
T  3777696 aagaaagttgtgtttctgacatcaaaagttttctaaagacataagtaaaatattaaaatgccctcaacggtagttaacta 3777775  T

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Target: scaffold0146 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 241 - 355
Target Start/End: Original strand, 24605 - 24719
Alignment:
Q  241 cttcttctccatctttgttgcttttcttcaattcacactacctattgttggcatcaattatacatcatattttcactacaatactcttgtttcatcaatt 340  Q
    ||||||||||||||||||| |||||||||||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||| |||||    
T  24605 cttcttctccatctttgttacttttcttcaattcacactacctactgctggcagcaattatacatcatactttcactacaatactcttgtttcaccaatt 24704  T
Q  341 atacagcttcaccaa 355  Q
    |||||||||||||||    
T  24705 atacagcttcaccaa 24719  T

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Target: scaffold0146; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 32371 - 32315
Alignment:
Q  96 gacataagtaaaatactaaattgccccccgcggtagttaactatcgttgaggacccg 152  Q
    |||| |||||||||||| || ||||||| |||||||||||||| |||||||||||||    
T  32371 gacacaagtaaaatacttaaatgcccccagcggtagttaactaccgttgaggacccg 32315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 30024 - 29973
Alignment:
Q  101 aagtaaaatactaaattgccccccgcggtagttaactatcgttgaggacccg 152  Q
    |||||||||||| || ||||||  |||||||||||||| |||||||||||||    
T  30024 aagtaaaatacttaaatgcccctagcggtagttaactaccgttgaggacccg 29973  T

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Target: chr4 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 241 - 355
Target Start/End: Original strand, 43035940 - 43036054
Alignment:
Q  241 cttcttctccatctttgttgcttttcttcaattcacactacctattgttggcatcaattatacatcatattttcactacaatactcttgtttcatcaatt 340  Q
    |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||| ||||||||||||||||| |||||    
T  43035940 cttcttctacatctttgttgcttttcttcaattcacactacctactgctggcatcaattatacatcatactttcaccacaatactcttgtttcaccaatt 43036039  T
Q  341 atacagcttcaccaa 355  Q
    |||||||||||||||    
T  43036040 atacagcttcaccaa 43036054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 59 - 192
Target Start/End: Complemental strand, 43036553 - 43036423
Alignment:
Q  59 aagaaagttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaactatcgttgaggacccgatgacg 158  Q
    |||||| |||||||| |||||| ||||  |||  || |||| |||||||||||| || ||||||  |||||||||||||| |||||||||||||    |     
T  43036553 aagaaaattgcttttttgacataaaaaacttcacaatgacacaagtaaaatacttaaatgcccctagcggtagttaactaccgttgaggacccgg---ca 43036457  T
Q  159 gcagttaactaccgctaaattcatttcttcaatt 192  Q
    |||||||||||||||| || || |||||||||||    
T  43036456 gcagttaactaccgctgaaatcttttcttcaatt 43036423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 53897703 - 53897655
Alignment:
Q  96 gacataagtaaaatactaaattgccccccgcggtagttaactatcgttg 144  Q
    |||| ||||||  |||||||| |||||| ||||||||||||||||||||    
T  53897703 gacacaagtaatttactaaatagcccccagcggtagttaactatcgttg 53897655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 241 - 349
Target Start/End: Complemental strand, 21761950 - 21761842
Alignment:
Q  241 cttcttctccatctttgttgcttttcttcaattcacactacctattgttggcatcaattatacatcatattttcactacaatactcttgtttcatcaatt 340  Q
    ||||||||||||||||||| ||| |||||||||||||||||| | |||| ||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  21761950 cttcttctccatctttgtttcttctcttcaattcacactaccaactgttagcatcaattatacatcatactttcactacaatactcttgtttcaccaatt 21761851  T
Q  341 atacagctt 349  Q
    |||||||||    
T  21761850 atacagctt 21761842  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 261 - 355
Target Start/End: Complemental strand, 37770741 - 37770647
Alignment:
Q  261 cttttcttcaattcacactacctattgttggcatcaattatacatcatattttcactacaatactcttgtttcatcaattatacagcttcaccaa 355  Q
    ||||||||||||||||||||||||  | || |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  37770741 cttttcttcaattcacactacctaccgctgacatcaattatacatcatactttcactacaatactcttgtttcaccaattatacagcttcaccaa 37770647  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 18981488 - 18981565
Alignment:
Q  66 ttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaactatcgtt 143  Q
    |||||||| |||||| ||||  |||||||||||| |||||||||||| || || |||| ||| |||||||||| ||||    
T  18981488 ttgcttttttgacataaaaaacttcctaaagacacaagtaaaatacttaaatgtccccagcgatagttaactaccgtt 18981565  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 9953148 - 9953195
Alignment:
Q  60 agaaagttgcttttctgacatcaaaagtttcctaaagacataagtaaa 107  Q
    |||||||||||||| ||||||||||| ||||||||| ||| |||||||    
T  9953148 agaaagttgcttttttgacatcaaaaatttcctaaaaacacaagtaaa 9953195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 37770236 - 37770287
Alignment:
Q  103 gtaaaatactaaattgccccccgcggtagttaactatcgttgaggacccgat 154  Q
    |||||||||| || |||||||  ||||||||||||||||||||||| |||||    
T  37770236 gtaaaatacttaaatgcccccaacggtagttaactatcgttgaggatccgat 37770287  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 42486372 - 42486445
Alignment:
Q  66 ttgcttttctgacatca-aaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaacta 138  Q
    |||||||| | |||||| ||| ||||||||| ||| ||||||||||||||| | || || ||||||||||||||    
T  42486372 ttgcttttttaacatcataaactttcctaaaaacacaagtaaaatactaaaatacctcctgcggtagttaacta 42486445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 180
Target Start/End: Original strand, 27866812 - 27866928
Alignment:
Q  61 gaaagttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaactatcgttgaggacccgatgacggc 160  Q
    ||||||||||||||||| ||||||||| ||||||| ||| |||||||||| | || ||||| | |||||||||||||| |||||| ||||||    | ||    
T  27866812 gaaagttgcttttctgaaatcaaaagtctcctaaaaacacaagtaaaatatttaaatgccctcagcggtagttaactaccgttgaagacccgg---cagc 27866908  T
Q  161 agttaactaccgctaaattc 180  Q
    |||||||||||||| |||||    
T  27866909 agttaactaccgctgaattc 27866928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 28985355 - 28985278
Alignment:
Q  67 tgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaactatcgttg 144  Q
    |||| |||||||||||||||||||||||| ||| |||||||  || ||||| |||||  |||||||||| || |||||    
T  28985355 tgctgttctgacatcaaaagtttcctaaaaacacaagtaaatgacgaaattacccccaacggtagttaagtaccgttg 28985278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 47317829 - 47317776
Alignment:
Q  96 gacataagtaaaatactaaattgccccccgcggtagttaactatcgttgaggac 149  Q
    |||| |||||||||||| || ||||||| |||||||||||||| ||||||||||    
T  47317829 gacacaagtaaaatacttaaatgcccccagcggtagttaactaccgttgaggac 47317776  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 47317205 - 47317245
Alignment:
Q  59 aagaaagttgcttttctgacatcaaaagtttcctaaagaca 99  Q
    ||||||||||||||| |||||||||||||||||||| ||||    
T  47317205 aagaaagttgcttttttgacatcaaaagtttcctaacgaca 47317245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 137
Target Start/End: Original strand, 21166378 - 21166448
Alignment:
Q  66 ttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaact 137  Q
    ||||||||||||| |||| | || |||||| ||| ||||||||||||||| | ||||| |||||||||||||    
T  21166378 ttgcttttctgacttcaatactt-cctaaaaacacaagtaaaatactaaaatacccccagcggtagttaact 21166448  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 148
Target Start/End: Original strand, 44006395 - 44006482
Alignment:
Q  61 gaaagttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaactatcgttgagga 148  Q
    |||| |||||||||||||||  ||| ||||  || ||||||||||||||||| || ||||||| |||||||||||||| |||| ||||    
T  44006395 gaaaattgcttttctgacattgaaaatttcacaatgacataagtaaaatacttaaatgcccccagcggtagttaactaccgttcagga 44006482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 37460606 - 37460532
Alignment:
Q  64 agttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaacta 138  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||  || ||||| || || ||||||||||||||    
T  37460606 agttgcttttctgacatcaaatgtttcctaatgacacaagtaaatgacaaaattacctccagcggtagttaacta 37460532  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 8262721 - 8262805
Alignment:
Q  60 agaaagttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaactatcgttg 144  Q
    ||||| |||| ||| |||||| ||||  ||| |||||||| |||||||||| |  ||||||||   |||||||||||||||||||    
T  8262721 agaaaattgcatttttgacataaaaaacttcataaagacacaagtaaaataatttattgcccctaacggtagttaactatcgttg 8262805  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 34456935 - 34457018
Alignment:
Q  61 gaaagttgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaactatcgttg 144  Q
    |||| |||||||| |||||| ||||  ||  |||||||| |||||||||||| || ||||| | ||||||||||||||||||||    
T  34456935 gaaaattgcttttttgacataaaaaactttataaagacacaagtaaaatacttaaatgccctcagcggtagttaactatcgttg 34457018  T

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Target: scaffold0915 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0915
Description:

Target: scaffold0915; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 861 - 784
Alignment:
Q  67 tgcttttctgacatcaaaagtttcctaaagacataagtaaaatactaaattgccccccgcggtagttaactatcgttg 144  Q
    |||| |||||||||||||||||||||||| ||| |||||||  || ||||| |||||  |||||||||| || |||||    
T  861 tgctgttctgacatcaaaagtttcctaaaaacacaagtaaatgacgaaattacccccaacggtagttaagtaccgttg 784  T

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